Rorug07G0042600

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004168
Physical Location & Seq
Reverse (-)
3007773 .. 3012288
4516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0042600.1

Sequence Viewer

Length: 861 bp
ATGCATTTAACAAACAAGAAGGGTTCAGAAGAAGTAGTTGAGGATCCGGAAATAGTGAAACAAGTGAAGCAGAAAAGGGCAGAGCAAGAACCCTCACAAACACCTTCTTTGAAAGATGATGTTGTAGCACAAGTTTTGGGTCCTGATCCACGAGGACGGGTAAGAGGGTTAGGATTGGGAGCAGTCCCTTCAAAGTTAGAATATCAAACCAAAGTTGGATGCAAAGTTGCTAACTTGGAGAAACAAGTGTCCACTCAAGCACAAAATATGCTTTCTCAATCACAAGAGATTGAACGATTGAAAGAAGTGGTTGCCACTCTTTTAGCAAGATCAGAGAAAGAAAGGAATAACCATCAGGCTAGTAACAATGTTCAGCATTCTGCTAATAAGTTTGCACTACAAACGCAGAATGAAAATCCAAGTGTTCAACATCATAGCAGTGATGGAATACAAAGCAAACACAATATTGCTAGTGTTCGAGGTTCTGAAAGTGGGAGGCCACAAAGCAAGCACAGCAACCAAAAGAAAACTTCAAGTATTCAACAGTCTGCTGGTGATGGGTCGCAAAGCAAAGACAAAGAAGGTAAAAGGACCAAAGTTACAAAGGATGATCAGAATAGAATCGAATTGTTAAGTTGGTTTGAGATGGAAGAACAGGTTGTTGCAATTGCAAAACTAGAGTCAAAAGATCCAAATGTAAAAGTCCATCATGTGCCCCTTGGTCCTGAATGCTGGAAAGTTTGGGTGCTTGATGTTTTTGAGGATATAGCTTTATATCGACCAACTAGGGAGTTTGGAACACTGAGTATGGCTCAAGGAAGTACAGTTGCATGGCCTATCAAGTACATCAAACAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

286

Amino Acids

31.93

Weight (kDa)

9.03

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 215 - 284 8.2e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 46
AclWI GGATC 4 cut(s) 38, 51, 140, 683
AfaI GTAC 2 cut(s) 823, 845
AgsI TTSAA 7 cut(s) 112, 192, 293, 301, 428, 534, 542
AluBI AGCT 1 cut(s) 770
AluI AGCT 1 cut(s) 770
AlwI GGATC 4 cut(s) 38, 51, 140, 683
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 2 cut(s) 497, 833
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AspS9I GGNCC 3 cut(s) 140, 591, 722
AsuHPI GGTGA 1 cut(s) 566
AvaII GGWCC 3 cut(s) 140, 591, 722
BaeGI GKGCMC 1 cut(s) 717
BamHI GGATCC 1 cut(s) 43
BauI CACGAG 1 cut(s) 150
BccI CCATC 5 cut(s) 360, 437, 551, 640, 714
BclI TGATCA 1 cut(s) 610
BfaI CTAG 4 cut(s) 360, 471, 677, 786
Bme18I GGWCC 3 cut(s) 140, 591, 722
BmgT120I GGNCC 3 cut(s) 140, 591, 722
BmiI GGNNCC 2 cut(s) 45, 141
BmsI GCATC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 796, 828
BpuEI CTTGAG 2 cut(s) 240, 798
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 2 cut(s) 224, 613
BseMII CTCAG 1 cut(s) 794
BseSI GKGCMC 1 cut(s) 717
BshFI GGCC 2 cut(s) 499, 835
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 2 cut(s) 376, 734
BsnI GGCC 2 cut(s) 499, 835
Bsp1286I GDGCHC 1 cut(s) 717
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 5 cut(s) 43, 145, 329, 610, 688
BspANI GGCC 2 cut(s) 499, 835
BspCNI CTCAG 1 cut(s) 795
BspEI TCCGGA 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 45, 141
BspPI GGATC 4 cut(s) 38, 51, 140, 683
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 5 cut(s) 43, 145, 329, 610, 688
BssSI CACGAG 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 718
Bst2BI CACGAG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 546, 826
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 1 cut(s) 803
BstF5I GGATG 2 cut(s) 224, 613
BstKTI GATC 5 cut(s) 46, 148, 332, 613, 691
BstMBI GATC 5 cut(s) 43, 145, 329, 610, 688
BstMWI GCNNNNNNNGC 1 cut(s) 513
BstSLI GKGCMC 1 cut(s) 717
BstX2I RGATCY 2 cut(s) 43, 688
BstYI RGATCY 2 cut(s) 43, 688
BsuRI GGCC 2 cut(s) 499, 835
BtsCI GGATG 2 cut(s) 224, 613
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 445, 800
Cac8I GCNNGC 1 cut(s) 509
Cfr13I GGNCC 3 cut(s) 140, 591, 722
Csp6I GTAC 2 cut(s) 822, 844
CviAII CATG 2 cut(s) 710, 831
CviJI RGCY 5 cut(s) 359, 499, 770, 812, 835
CviKI_1 RGCY 5 cut(s) 359, 499, 770, 812, 835
CviQI GTAC 2 cut(s) 822, 844
DdeI CTNAG 1 cut(s) 803
DpnI GATC 5 cut(s) 45, 147, 331, 612, 690
DpnII GATC 5 cut(s) 43, 145, 329, 610, 688
Eco130I CCWWGG 1 cut(s) 718
Eco47I GGWCC 3 cut(s) 140, 591, 722
EcoO109I RGGNCCY 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 718
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 2 cut(s) 713, 834
FaiI YATR 7 cut(s) 269, 435, 711, 767, 775, 809, 832
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 709, 830
FbaI TGATCA 1 cut(s) 610
FokI GGATG 2 cut(s) 231, 620
FspBI CTAG 4 cut(s) 360, 471, 677, 786
HaeIII GGCC 2 cut(s) 499, 835
HapII CCGG 1 cut(s) 47
Hin1II CATG 2 cut(s) 713, 834
HinfI GANTC 2 cut(s) 621, 680
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 4 cut(s) 28, 334, 487, 615
Hpy188III TCNNGA 3 cut(s) 47, 143, 725
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 4 cut(s) 13, 114, 198, 575
HpyCH4III ACNGT 2 cut(s) 546, 826
HpyCH4V TGCA 6 cut(s) 4, 222, 395, 665, 671, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 513
HpyF3I CTNAG 1 cut(s) 803
Hsp92II CATG 2 cut(s) 713, 834
Kpn2I TCCGGA 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 5 cut(s) 43, 145, 329, 610, 688
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 7 cut(s) 60, 156, 341, 537, 641, 718, 738
LweI GCATC 1 cut(s) 209
MaeI CTAG 4 cut(s) 360, 471, 677, 786
MaeIII GTNAC 2 cut(s) 362, 598
MalI GATC 5 cut(s) 45, 147, 331, 612, 690
MboI GATC 5 cut(s) 43, 145, 329, 610, 688
MboII GAAGA 2 cut(s) 41, 662
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 2 cut(s) 43, 688
MhlI GDGCHC 1 cut(s) 717
MluCI AATT 2 cut(s) 626, 666
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 7 cut(s) 34, 103, 146, 158, 473, 489, 754
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 46
MseI TTAA 2 cut(s) 8, 632
MslI CAYNNNNRTG 1 cut(s) 438
MspI CCGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 2 cut(s) 376, 734
MwoI GCNNNNNNNGC 1 cut(s) 513
NdeII GATC 5 cut(s) 43, 145, 329, 610, 688
NlaIII CATG 2 cut(s) 713, 834
NlaIV GGNNCC 2 cut(s) 45, 141
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 2 cut(s) 376, 734
PfeI GAWTC 1 cut(s) 621
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 45, 141
PspPI GGNCC 3 cut(s) 140, 591, 722
PspPPI RGGWCCY 1 cut(s) 140
PsuI RGATCY 2 cut(s) 43, 688
RsaI GTAC 2 cut(s) 823, 845
RsaNI GTAC 2 cut(s) 822, 844
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 8, 632
Sau3AI GATC 5 cut(s) 43, 145, 329, 610, 688
Sau96I GGNCC 3 cut(s) 140, 591, 722
SchI GAGTC 1 cut(s) 689
SduI GDGCHC 1 cut(s) 717
SetI ASST 5 cut(s) 106, 484, 586, 660, 772
SfaNI GCATC 1 cut(s) 209
SinI GGWCC 3 cut(s) 140, 591, 722
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 255, 813
SmoI CTYRAG 2 cut(s) 255, 813
Sse9I AATT 2 cut(s) 626, 666
SspI AATATT 1 cut(s) 466
SspMI CTAG 4 cut(s) 360, 471, 677, 786
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 2 cut(s) 546, 826
TaqI TCGA 3 cut(s) 478, 624, 778
TasI AATT 2 cut(s) 626, 666
TatI WGTACW 2 cut(s) 821, 843
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 2 cut(s) 8, 632
Tru9I TTAA 2 cut(s) 8, 632
TscAI CASTG 2 cut(s) 445, 807
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 2 cut(s) 445, 807
VpaK11BI GGWCC 3 cut(s) 140, 591, 722
XspI CTAG 4 cut(s) 360, 471, 677, 786
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.