Rh7BG169400

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004168
Physical Location & Seq
Reverse (-)
13181373 .. 13185274
3902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG169400.1

Sequence Viewer

Length: 543 bp
ATGCTTTGTCTCAGTCCATTGTTTGTTACTTGGAAGAAAATGGTGAATGGTAGTGAGCCTCGTTTGCGTGGATGTATTGGAACACTAGAACCTCGTGGCTTGGTTAATGGATTCAAGGACTATACTCTAAACAGTGCTTTGAGGGACCGCAGGTTTCCCCCAATACAAGCTAAGGAATTACCATATTTGGAATGTACAGTTTCCATTTTGACTGATTATGAAACTGCTGACGACTACCTTGATTGGGAGGTTGGGAAGCATGGTATAATCATTGAGTTTACTGATCCGGGCTATGGTACAAGGCGCAATGCAACATACTTGCCTGAGGTTGCTGCGCATGAAGGTTGGACTCAAATAGAAGCAATTGACTCATTGATGCGGAAAGCAGGCTATACTGGGACCATCACCGAGTCACTTCGGAAGCGTATACGATTGACCCGCTACCAGAGCTCATTATATACAATGCACCACAGCGACTACGTTTCTTATGTGAAGGCAAGCAGAGGCGCAGCTACATCTGGCTCCAAGTCCAGCAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

180

Amino Acids

20.35

Weight (kDa)

8.72

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMMECR1 PF01871 6 - 151 1.7e-42 AMMECR1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 336
Acc36I ACCTGC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 427
AciI CCGC 3 cut(s) 148, 379, 439
AclWI GGATC 1 cut(s) 278
AfaI GTAC 2 cut(s) 196, 298
AfiI CCNNNNNNNGG 2 cut(s) 244, 293
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 3 cut(s) 170, 450, 512
AluI AGCT 3 cut(s) 170, 450, 512
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 332, 509
AspLEI GCGC 3 cut(s) 306, 337, 509
AspS9I GGNCC 2 cut(s) 145, 399
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 55, 397
AvaII GGWCC 2 cut(s) 145, 399
AxyI CCTNAGG 1 cut(s) 324
BanII GRGCYC 1 cut(s) 452
BauI CACGAG 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 319, 521
BccI CCATC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 141
BisI GCNGC 2 cut(s) 333, 510
BlsI GCNGC 2 cut(s) 334, 511
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 2 cut(s) 145, 399
BmgT120I GGNCC 2 cut(s) 145, 399
BmiI GGNNCC 3 cut(s) 146, 400, 523
BmrFI CCNGG 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 293
Bse1I ACTGG 1 cut(s) 400
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 313
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 244, 293
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 25, 315
BseNI ACTGG 1 cut(s) 400
BseXI GCAGC 2 cut(s) 319, 521
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 2 cut(s) 158, 412
BslI CCNNNNNNNGG 2 cut(s) 244, 293
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 158, 412
Bsp1286I GDGCHC 1 cut(s) 452
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 3 cut(s) 148, 379, 439
BspCNI CTCAG 2 cut(s) 24, 316
BspLI GGNNCC 3 cut(s) 146, 400, 523
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 194
BsrI ACTGG 1 cut(s) 400
BssMI GATC 1 cut(s) 283
BssNAI GTATAC 1 cut(s) 428
BssSI CACGAG 1 cut(s) 93
Bst1107I GTATAC 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 134, 199
BstAUI TGTACA 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 388, 499
BstDEI CTNAG 3 cut(s) 11, 171, 324
BstF5I GGATG 1 cut(s) 77
BstHHI GCGC 3 cut(s) 306, 337, 509
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 64, 447
BstSCI CCNGG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 319, 521
BstZ17I GTATAC 1 cut(s) 428
Bsu36I CCTNAGG 1 cut(s) 324
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 139
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 388, 499
CfoI GCGC 3 cut(s) 306, 337, 509
Cfr13I GGNCC 2 cut(s) 145, 399
Csp6I GTAC 2 cut(s) 195, 297
CviAII CATG 2 cut(s) 260, 338
CviJI RGCY 8 cut(s) 58, 99, 170, 291, 390, 450, 512, 522
CviKI_1 RGCY 8 cut(s) 58, 99, 170, 291, 390, 450, 512, 522
CviQI GTAC 2 cut(s) 195, 297
DdeI CTNAG 3 cut(s) 11, 171, 324
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 145, 399
Eco53kI GAGCTC 1 cut(s) 450
Eco81I CCTNAGG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 452
FaeI CATG 2 cut(s) 263, 341
FaqI GGGAC 2 cut(s) 158, 412
FatI CATG 2 cut(s) 259, 337
FauI CCCGC 1 cut(s) 446
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 333, 510
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 2 cut(s) 333, 510
FspBI CTAG 1 cut(s) 86
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 3 cut(s) 305, 336, 508
GluI GCNGC 2 cut(s) 333, 510
HapII CCGG 1 cut(s) 287
HhaI GCGC 3 cut(s) 306, 337, 509
Hin1II CATG 2 cut(s) 263, 341
Hin6I GCGC 3 cut(s) 304, 335, 507
HinP1I GCGC 3 cut(s) 304, 335, 507
HinfI GANTC 4 cut(s) 111, 349, 368, 410
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 55, 397
Hpy166II GTNNAC 2 cut(s) 279, 428
Hpy188I TCNGA 1 cut(s) 420
Hpy8I GTNNAC 2 cut(s) 279, 428
HpyAV CCTTC 2 cut(s) 335, 487
HpyCH4III ACNGT 2 cut(s) 134, 199
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 2 cut(s) 311, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 447
HpyF3I CTNAG 3 cut(s) 11, 171, 324
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 2 cut(s) 263, 341
HspAI GCGC 3 cut(s) 304, 335, 507
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 527
LpnPI CCDG 7 cut(s) 136, 300, 336, 372, 381, 458, 504
Lsp1109I GCAGC 2 cut(s) 319, 521
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 25, 411
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 46
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 2 cut(s) 176, 363
MlyI GAGTC 3 cut(s) 343, 362, 419
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 6 cut(s) 69, 102, 135, 241, 319, 497
MseI TTAA 1 cut(s) 105
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 64, 447
NciI CCSGG 1 cut(s) 288
NdeII GATC 1 cut(s) 283
NlaIII CATG 2 cut(s) 263, 341
NlaIV GGNNCC 3 cut(s) 146, 400, 523
NmuCI GTSAC 1 cut(s) 411
NsbI TGCGCA 1 cut(s) 336
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 334, 511
PleI GAGTC 3 cut(s) 343, 362, 418
PpsI GAGTC 3 cut(s) 343, 362, 418
Psp124BI GAGCTC 1 cut(s) 452
PspN4I GGNNCC 3 cut(s) 146, 400, 523
PspPI GGNCC 2 cut(s) 145, 399
RsaI GTAC 2 cut(s) 196, 298
RsaNI GTAC 2 cut(s) 195, 297
SacI GAGCTC 1 cut(s) 452
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 333, 510
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 145, 399
SchI GAGTC 3 cut(s) 343, 362, 419
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 1 cut(s) 366
SinI GGWCC 2 cut(s) 145, 399
Sse9I AATT 2 cut(s) 176, 363
SsiI CCGC 3 cut(s) 148, 379, 439
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 452
StyD4I CCNGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 134, 199
TaiI ACGT 1 cut(s) 483
TasI AATT 2 cut(s) 176, 363
TatI WGTACW 1 cut(s) 194
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 411
TseI GCWGC 2 cut(s) 332, 509
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 2 cut(s) 234, 354
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 145, 399
XmiI GTMKAC 1 cut(s) 427
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.