RchiOBHm_Chr7g0197741

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004168
Physical Location & Seq
Reverse (-)
15587311 .. 15593167
5857 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17689

Sequence Viewer

Length: 633 bp
ATGGTGTCGGCGAACAAGGAGATGGTGGTGTATTGCTTTGACACGCTCCTGGCTCACTACAACACTGAAGAAGCTCCTCCCCCGGCATTCGAGGATGGCCAACATCCATTGTTTGTTACTTGGAAGAAAATGGTGAATGGTAGTGAGCCTCGTTTGCGTGGATGTATTGGAACACTAGAACCTCGTGGCTTGGTTAATGGATTCAAGGACTATACTCTAAACAGTGCTTTGAGGGACCGCAGGTTTCCCCCAATACAAGCTAAGGAATTACCATATTTGGAATGTACAGTTTCCATTTTGACTGATTATGAAACTGCTGATGACTACCTTGATTGGGAGGTTGGGAAGCATGGTATAATCATTGAGTTTACTGATCCGGGCTATGGTACAAGGCGCAATGCAACATACTTGCCTGAGGTTGCTGCGCATGAAGGTTGGACTCAAATAGAAGCAATTGACTCATTGATGCGGAAAGCAGGGTATACTGGTACCATCACCGAGTCACTTCGGAAGCGTATACGATTGACCCGCTACCAGAGCTCATTATATACAATGCACCACAGCGACTACGTTTCTTATGTGAAGGCAAGCAGAGGCGCAGCTACATCTGGCTCCAAGTCCAGCAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

210

Amino Acids

23.74

Weight (kDa)

6.31

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMMECR1 PF01871 10 - 181 1.8e-44 AMMECR1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 488
AccI GTMKAC 2 cut(s) 482, 517
AciI CCGC 3 cut(s) 238, 469, 529
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 3 cut(s) 286, 388, 490
AfiI CCNNNNNNNGG 2 cut(s) 334, 383
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 4 cut(s) 74, 260, 540, 602
AluI AGCT 4 cut(s) 74, 260, 540, 602
Alw21I GWGCWC 1 cut(s) 542
AlwI GGATC 1 cut(s) 368
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 2 cut(s) 422, 599
Asp718I GGTACC 1 cut(s) 488
AspLEI GCGC 3 cut(s) 396, 427, 599
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 2 cut(s) 83, 378
AsuHPI GGTGA 2 cut(s) 145, 487
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 414
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 542
BauI CACGAG 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 2 cut(s) 409, 611
BccI CCATC 3 cut(s) 16, 89, 500
BciT130I CCWGG 1 cut(s) 50
BcnI CCSGG 2 cut(s) 83, 378
BfaI CTAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 231
BisI GCNGC 2 cut(s) 423, 600
BlsI GCNGC 2 cut(s) 424, 601
Bme1390I CCNGG 3 cut(s) 50, 83, 378
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 236, 490, 613
BmrFI CCNGG 3 cut(s) 50, 83, 378
BmsI GCATC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 83, 378
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 383
Bse1I ACTGG 1 cut(s) 490
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 3 cut(s) 100, 103, 167
BseLI CCNNNNNNNGG 2 cut(s) 334, 383
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 409, 611
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 542
BsiSI CCGG 2 cut(s) 83, 377
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 334, 383
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 542
Bsp1407I TGTACA 1 cut(s) 284
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 3 cut(s) 238, 469, 529
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 236, 490, 613
BspMI ACCTGC 1 cut(s) 231
BspPI GGATC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 403
BsrGI TGTACA 1 cut(s) 284
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 373
BssNAI GTATAC 2 cut(s) 483, 518
BssSI CACGAG 1 cut(s) 183
Bst1107I GTATAC 2 cut(s) 483, 518
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 224, 289
BstAUI TGTACA 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 2 cut(s) 261, 414
BstF5I GGATG 3 cut(s) 100, 103, 167
BstHHI GCGC 3 cut(s) 396, 427, 599
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 154, 537
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 48, 81, 376
BstV1I GCAGC 2 cut(s) 409, 611
BstZ17I GTATAC 2 cut(s) 483, 518
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 3 cut(s) 100, 103, 167
BtsIMutI CAGTG 2 cut(s) 63, 229
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 589
CfoI GCGC 3 cut(s) 396, 427, 599
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 3 cut(s) 285, 387, 489
CviAII CATG 2 cut(s) 350, 428
CviQI GTAC 3 cut(s) 285, 387, 489
DdeI CTNAG 2 cut(s) 261, 414
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 87
Eco81I CCTNAGG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 542
FaeI CATG 2 cut(s) 353, 431
FaqI GGGAC 1 cut(s) 248
FatI CATG 2 cut(s) 349, 427
FauI CCCGC 1 cut(s) 536
FblI GTMKAC 2 cut(s) 482, 517
Fnu4HI GCNGC 2 cut(s) 423, 600
FokI GGATG 3 cut(s) 90, 107, 174
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 2 cut(s) 423, 600
FspBI CTAG 1 cut(s) 176
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 3 cut(s) 395, 426, 598
GluI GCNGC 2 cut(s) 423, 600
HaeIII GGCC 1 cut(s) 99
HapII CCGG 2 cut(s) 83, 377
HhaI GCGC 3 cut(s) 396, 427, 599
Hin1II CATG 2 cut(s) 353, 431
Hin6I GCGC 3 cut(s) 394, 425, 597
HinP1I GCGC 3 cut(s) 394, 425, 597
HinfI GANTC 4 cut(s) 201, 439, 458, 500
HpaII CCGG 2 cut(s) 83, 377
HphI GGTGA 2 cut(s) 145, 487
Hpy166II GTNNAC 3 cut(s) 369, 483, 518
Hpy188I TCNGA 1 cut(s) 510
Hpy8I GTNNAC 3 cut(s) 369, 483, 518
HpyAV CCTTC 2 cut(s) 425, 577
HpyCH4III ACNGT 2 cut(s) 224, 289
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 2 cut(s) 401, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 537
HpyF3I CTNAG 2 cut(s) 261, 414
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 2 cut(s) 353, 431
HspAI GCGC 3 cut(s) 394, 425, 597
KpnI GGTACC 1 cut(s) 492
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 3 cut(s) 51, 79, 617
Lsp1109I GCAGC 2 cut(s) 409, 611
LweI GCATC 1 cut(s) 456
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 2 cut(s) 115, 501
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 2 cut(s) 80, 136
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 1 cut(s) 542
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 2 cut(s) 266, 453
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 3 cut(s) 433, 452, 509
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 8 cut(s) 85, 87, 159, 192, 225, 331, 409, 587
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 2 cut(s) 83, 377
MspR9I CCNGG 3 cut(s) 50, 83, 378
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 154, 537
NciI CCSGG 2 cut(s) 83, 378
NdeII GATC 1 cut(s) 373
NlaIII CATG 2 cut(s) 353, 431
NlaIV GGNNCC 3 cut(s) 236, 490, 613
NmuCI GTSAC 1 cut(s) 501
NsbI TGCGCA 1 cut(s) 426
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 424, 601
PleI GAGTC 3 cut(s) 433, 452, 508
PpsI GAGTC 3 cut(s) 433, 452, 508
Psp124BI GAGCTC 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 236, 490, 613
PspPI GGNCC 1 cut(s) 235
RsaI GTAC 3 cut(s) 286, 388, 490
RsaNI GTAC 3 cut(s) 285, 387, 489
SacI GAGCTC 1 cut(s) 542
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 423, 600
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 3 cut(s) 433, 452, 509
ScrFI CCNGG 3 cut(s) 50, 83, 378
SduI GDGCHC 1 cut(s) 542
SfaNI GCATC 1 cut(s) 456
SinI GGWCC 1 cut(s) 235
Sse9I AATT 2 cut(s) 266, 453
SsiI CCGC 3 cut(s) 238, 469, 529
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 3 cut(s) 48, 81, 376
TaaI ACNGT 2 cut(s) 224, 289
TaiI ACGT 1 cut(s) 573
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 266, 453
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 70, 229
TseFI GTSAC 1 cut(s) 501
TseI GCWGC 2 cut(s) 422, 599
Tsp45I GTSAC 1 cut(s) 501
TspDTI ATGAA 2 cut(s) 324, 444
TspRI CASTG 2 cut(s) 70, 229
VpaK11BI GGWCC 1 cut(s) 235
XmiI GTMKAC 2 cut(s) 482, 517
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.