Rw1G013650

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004168
Physical Location & Seq
Forward (+)
30517734 .. 30521288
3555 bp
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UTR
Exon/CDS
Intron
Rw1G013650.1

Sequence Viewer

Length: 540 bp
ATGGACTCCTCAGTGACGAGTTCGAAGTCGAGATTGGTTTGCTCAGAGTTTTTGTTGAACTTCTGTCGTGGACATGTGACTTCACCTTGGTCAAAGCTCTCTCCTCCCAAATCCAGGTCTGTCTTTTCAATCTTTTTATCTGATTTCTTATTTTCTGCTATTTCTACTCTGAATTACCATATTTTGGAATGTACAGTTTCCATTTTGACTGATTATGAAACTGCTGATGACTACCTTGATTGGGAGGTTGGGAAGCATGGTATAATCATTGAGTTTACTGATCCGGGCTATGGTACAAGGCGCAATGCAACATACTTGCCTGAGGTTGCTGCGCATGAAGGTTGGACTCAAATAGAAGCAATTGACTCATTGATGCGGAAAGCAGGGTATACTGGGACCATCACCGAGTCACTTCGGAAGCGTATACGATTGACCCGGTACCAGAGCTCATTATATACAATGCACCACAGCGACTACGTTTCTTATGTGAAGGCAAGCAGAGGCGCAGCTACATCTGGCTCCAAGTCCAGCAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

179

Amino Acids

20.12

Weight (kDa)

7.75

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMMECR1 PF01871 38 - 150 1.1e-21 AMMECR1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
Acc65I GGTACC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 438
AccB7I CCANNNNNTGG 1 cut(s) 184
AccI GTMKAC 2 cut(s) 389, 424
AciI CCGC 1 cut(s) 376
AclWI GGATC 1 cut(s) 275
AfaI GTAC 3 cut(s) 193, 295, 440
AfiI CCNNNNNNNGG 4 cut(s) 114, 184, 241, 290
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 58, 129
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 3 cut(s) 97, 447, 509
AluI AGCT 3 cut(s) 97, 447, 509
Alw21I GWGCWC 1 cut(s) 449
AlwI GGATC 1 cut(s) 275
ApeKI GCWGC 2 cut(s) 329, 506
Asp718I GGTACC 1 cut(s) 438
AspLEI GCGC 3 cut(s) 303, 334, 506
AspS9I GGNCC 1 cut(s) 396
AsuC2I CCSGG 2 cut(s) 285, 436
AsuHPI GGTGA 2 cut(s) 75, 394
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 396
AxyI CCTNAGG 1 cut(s) 321
BanI GGYRCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 2 cut(s) 316, 518
BccI CCATC 1 cut(s) 407
BciT130I CCWGG 1 cut(s) 115
BcnI CCSGG 2 cut(s) 285, 436
BisI GCNGC 2 cut(s) 330, 507
BlsI GCNGC 2 cut(s) 331, 508
Bme1390I CCNGG 3 cut(s) 115, 285, 436
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 3 cut(s) 397, 440, 520
BmrFI CCNGG 3 cut(s) 115, 285, 436
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 363
BmuI ACTGGG 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 23
BpuMI CCSGG 2 cut(s) 285, 436
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 184, 241, 290
Bse1I ACTGG 1 cut(s) 397
Bse21I CCTNAGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 86
BseLI CCNNNNNNNGG 4 cut(s) 114, 184, 241, 290
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 24, 57, 312
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 316, 518
BshNI GGYRCC 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 449
BsiSI CCGG 2 cut(s) 284, 436
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 4 cut(s) 114, 184, 241, 290
BsmFI GGGAC 1 cut(s) 409
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 449
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 1 cut(s) 376
BspCNI CTCAG 3 cut(s) 23, 56, 313
BspLI GGNNCC 3 cut(s) 397, 440, 520
BspPI GGATC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 191
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 1 cut(s) 280
BssNAI GTATAC 2 cut(s) 390, 425
BssT1I CCWWGG 1 cut(s) 86
Bst1107I GTATAC 2 cut(s) 390, 425
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 196
BstAUI TGTACA 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 496
BstDEI CTNAG 3 cut(s) 10, 43, 321
BstHHI GCGC 3 cut(s) 303, 334, 506
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 3 cut(s) 113, 283, 434
BstV1I GCAGC 2 cut(s) 316, 518
BstZ17I GTATAC 2 cut(s) 390, 425
Bsu36I CCTNAGG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 496
CfoI GCGC 3 cut(s) 303, 334, 506
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 3 cut(s) 192, 294, 439
CviAII CATG 3 cut(s) 74, 257, 335
CviJI RGCY 5 cut(s) 97, 288, 447, 509, 519
CviKI_1 RGCY 5 cut(s) 97, 288, 447, 509, 519
CviQI GTAC 3 cut(s) 192, 294, 439
DdeI CTNAG 3 cut(s) 10, 43, 321
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 447
Eco81I CCTNAGG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 3 cut(s) 77, 260, 338
FaqI GGGAC 1 cut(s) 409
FatI CATG 3 cut(s) 73, 256, 334
FblI GTMKAC 2 cut(s) 389, 424
Fnu4HI GCNGC 2 cut(s) 330, 507
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 330, 507
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 3 cut(s) 302, 333, 505
GluI GCNGC 2 cut(s) 330, 507
HapII CCGG 2 cut(s) 284, 436
HhaI GCGC 3 cut(s) 303, 334, 506
Hin1II CATG 3 cut(s) 77, 260, 338
Hin6I GCGC 3 cut(s) 301, 332, 504
HinP1I GCGC 3 cut(s) 301, 332, 504
HinfI GANTC 4 cut(s) 5, 346, 365, 407
HpaII CCGG 2 cut(s) 284, 436
HphI GGTGA 2 cut(s) 75, 394
Hpy166II GTNNAC 4 cut(s) 71, 276, 390, 425
Hpy188I TCNGA 4 cut(s) 46, 142, 171, 417
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 4 cut(s) 71, 276, 390, 425
HpyAV CCTTC 2 cut(s) 332, 484
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 2 cut(s) 308, 463
HpyF3I CTNAG 3 cut(s) 10, 43, 321
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 3 cut(s) 77, 260, 338
HspAI GCGC 3 cut(s) 301, 332, 504
KpnI GGTACC 1 cut(s) 442
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 524
LpnPI CCDG 9 cut(s) 100, 127, 297, 333, 369, 378, 449, 455, 501
Lsp1109I GCAGC 2 cut(s) 316, 518
LweI GCATC 1 cut(s) 363
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 3 cut(s) 13, 76, 408
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 2 cut(s) 172, 360
MlyI GAGTC 3 cut(s) 340, 359, 416
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 5 cut(s) 19, 114, 238, 316, 494
MspI CCGG 2 cut(s) 284, 436
MspR9I CCNGG 3 cut(s) 115, 285, 436
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 115
NciI CCSGG 2 cut(s) 285, 436
NdeII GATC 1 cut(s) 280
NlaIII CATG 3 cut(s) 77, 260, 338
NlaIV GGNNCC 3 cut(s) 397, 440, 520
NmuCI GTSAC 3 cut(s) 13, 76, 408
NsbI TGCGCA 1 cut(s) 333
NspI RCATGY 1 cut(s) 77
NspV TTCGAA 1 cut(s) 23
PciI ACATGT 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 2 cut(s) 331, 508
PleI GAGTC 3 cut(s) 340, 359, 415
PpsI GAGTC 3 cut(s) 340, 359, 415
PscI ACATGT 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 3 cut(s) 397, 440, 520
PspPI GGNCC 1 cut(s) 396
RsaI GTAC 3 cut(s) 193, 295, 440
RsaNI GTAC 3 cut(s) 192, 294, 439
SacI GAGCTC 1 cut(s) 449
SatI GCNGC 2 cut(s) 330, 507
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 3 cut(s) 340, 359, 416
ScrFI CCNGG 3 cut(s) 115, 285, 436
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 1 cut(s) 396
Sse9I AATT 2 cut(s) 172, 360
SsiI CCGC 1 cut(s) 376
SstI GAGCTC 1 cut(s) 449
StyD4I CCNGG 3 cut(s) 113, 283, 434
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 23, 29
TasI AATT 2 cut(s) 172, 360
TatI WGTACW 1 cut(s) 191
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 3 cut(s) 13, 76, 408
TseI GCWGC 2 cut(s) 329, 506
Tsp45I GTSAC 3 cut(s) 13, 76, 408
TspDTI ATGAA 2 cut(s) 231, 351
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 396
XceI RCATGY 1 cut(s) 77
XmiI GTMKAC 2 cut(s) 389, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.