Rh2CG078500

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004168
Physical Location & Seq
Forward (+)
6431969 .. 6432906
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG078500.1

Sequence Viewer

Length: 345 bp
ATGGAATGGATGAGGATGTGGACAGTAATTTCTTTGTTTATATGGATAATAGTTGGGAAGCATGGTATAATCATTGAGTTTACTGATCCGGGCTATGGTACAAGGCGCAATGCAACATACTTGCCTGAGGTTGCTGCGCATGAAGGTTGGACTCAAATAGAAGCAATTGACTCATTGATGCGGAAAGCAGGGTATACTGGGACCATCACCGAGTCACTTCGGAAGCGTATACGATTGACCCGGTACCAGAGCTCATTATATACAATGCACCACAGCGACTACGTTTCTTATGTGAAGGCAAGCAGAGGCGCAGCTACATCTGGCTCCAAGTCCAGCAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

114

Amino Acids

13.04

Weight (kDa)

9.69

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMMECR1 PF01871 16 - 86 5.2e-14 AMMECR1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 243
AccI GTMKAC 2 cut(s) 194, 229
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 80
AfaI GTAC 2 cut(s) 100, 245
AfiI CCNNNNNNNGG 1 cut(s) 95
AluBI AGCT 2 cut(s) 252, 314
AluI AGCT 2 cut(s) 252, 314
Alw21I GWGCWC 1 cut(s) 254
AlwI GGATC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 134, 311
Asp718I GGTACC 1 cut(s) 243
AspLEI GCGC 3 cut(s) 108, 139, 311
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 2 cut(s) 90, 241
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 201
AxyI CCTNAGG 1 cut(s) 126
BanI GGYRCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 121, 323
BccI CCATC 1 cut(s) 212
BcnI CCSGG 2 cut(s) 90, 241
BisI GCNGC 2 cut(s) 135, 312
BlsI GCNGC 2 cut(s) 136, 313
Bme1390I CCNGG 2 cut(s) 90, 241
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 3 cut(s) 202, 245, 325
BmrFI CCNGG 2 cut(s) 90, 241
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 207
BpuMI CCSGG 2 cut(s) 90, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 202
Bse21I CCTNAGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 115
BseGI GGATG 2 cut(s) 15, 21
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 121, 323
BshNI GGYRCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 2 cut(s) 89, 241
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 3 cut(s) 202, 245, 325
BspPI GGATC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 202
BssMI GATC 1 cut(s) 85
BssNAI GTATAC 2 cut(s) 195, 230
Bst1107I GTATAC 2 cut(s) 195, 230
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 15, 21
BstHHI GCGC 3 cut(s) 108, 139, 311
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 88, 239
BstV1I GCAGC 2 cut(s) 121, 323
BstZ17I GTATAC 2 cut(s) 195, 230
Bsu36I CCTNAGG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 15, 21
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 3 cut(s) 108, 139, 311
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 99, 244
CviAII CATG 2 cut(s) 62, 140
CviJI RGCY 4 cut(s) 93, 252, 314, 324
CviKI_1 RGCY 4 cut(s) 93, 252, 314, 324
CviQI GTAC 2 cut(s) 99, 244
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 254
FaeI CATG 2 cut(s) 65, 143
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 61, 139
FblI GTMKAC 2 cut(s) 194, 229
Fnu4HI GCNGC 2 cut(s) 135, 312
FokI GGATG 2 cut(s) 22, 28
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 135, 312
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 3 cut(s) 107, 138, 310
GluI GCNGC 2 cut(s) 135, 312
HapII CCGG 2 cut(s) 89, 241
HhaI GCGC 3 cut(s) 108, 139, 311
Hin1II CATG 2 cut(s) 65, 143
Hin6I GCGC 3 cut(s) 106, 137, 309
HinP1I GCGC 3 cut(s) 106, 137, 309
HinfI GANTC 3 cut(s) 151, 170, 212
HpaII CCGG 2 cut(s) 89, 241
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 4 cut(s) 21, 81, 195, 230
Hpy188I TCNGA 1 cut(s) 222
Hpy8I GTNNAC 4 cut(s) 21, 81, 195, 230
HpyAV CCTTC 2 cut(s) 137, 289
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 113, 268
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 2 cut(s) 65, 143
HspAI GCGC 3 cut(s) 106, 137, 309
KpnI GGTACC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 7 cut(s) 102, 138, 174, 183, 254, 260, 306
Lsp1109I GCAGC 2 cut(s) 121, 323
LweI GCATC 1 cut(s) 168
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 213
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 2 cut(s) 27, 165
MlyI GAGTC 3 cut(s) 145, 164, 221
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 3 cut(s) 6, 121, 299
MspI CCGG 2 cut(s) 89, 241
MspR9I CCNGG 2 cut(s) 90, 241
MunI CAATTG 1 cut(s) 165
NciI CCSGG 2 cut(s) 90, 241
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 65, 143
NlaIV GGNNCC 3 cut(s) 202, 245, 325
NmuCI GTSAC 1 cut(s) 213
NsbI TGCGCA 1 cut(s) 138
PkrI GCNGC 2 cut(s) 136, 313
PleI GAGTC 3 cut(s) 145, 164, 220
PpsI GAGTC 3 cut(s) 145, 164, 220
Psp124BI GAGCTC 1 cut(s) 254
PspN4I GGNNCC 3 cut(s) 202, 245, 325
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 2 cut(s) 100, 245
RsaNI GTAC 2 cut(s) 99, 244
SacI GAGCTC 1 cut(s) 254
SatI GCNGC 2 cut(s) 135, 312
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 3 cut(s) 145, 164, 221
ScrFI CCNGG 2 cut(s) 90, 241
SduI GDGCHC 1 cut(s) 254
SetI ASST 5 cut(s) 132, 148, 254, 285, 316
SfaNI GCATC 1 cut(s) 168
SinI GGWCC 1 cut(s) 201
Sse9I AATT 2 cut(s) 27, 165
SsiI CCGC 1 cut(s) 181
SstI GAGCTC 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 88, 239
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 285
TasI AATT 2 cut(s) 27, 165
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 2 cut(s) 134, 311
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 201
XmiI GTMKAC 2 cut(s) 194, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.