Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004168

Physical Location & Seq

Genomic Coordinates Forward (+)

3852430 .. 3858257

Gene Structure 5828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTGTCGGCGGACAAGGACATGGTGGCTTACTGCTTCGATACTCTCCTCGCTCACTACAGCACCGAACAACCTCCTCCCCCACCCTTCGACGACGGCCAGCATCCATTGTTCGTTACTTGGAAGAAAGTGGTGAATGGTGGTGAGCCTCGTTTGCGTGGATGCATAGGAACACTAGAACCTCGGGGCCTGATTAATGGATTCAGGGATTACGCTCTAACCAGTGCTTTGAAGGACCGGAGGTTTTCCCCAATACAAGCTAAGGAAATACCTCATTTGGAATGCACAGTTTCCATTCTGACGGATTATGAAACTGCTAGCCACTATCTTGATTGGGAGATTGGGAAACATGGTATAATTATTGAGTTTACTGATCCTGACTATAATACAAGGCGCAGTGCCACGTACTTGCCTGAGGTTGCTGCCCATGAAGGTTGGACAAAAACAGAAGCAATTGACTCATTGATGCGGAAATCTGGTTATAATGGCAGCATCACTGAGCTGCTTCGGAAGAGTATTCGATTGACCCGCTACCAGAGCTCATTGTGTACCATGGACCACAACGACTATGTTTCCTACGTCAAGGAAACCAGAGGCGGAGCTCCGACTCTCGTCGGAGCTATATCTGGCAGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMMECR1

Protein Analysis

213

Amino Acids

23.8

Weight (kDa)

6.16

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38710 AT2G38710 AT2G38710 AT2G38710
fragaria_vesca	FvH4_5g02370 FvH4_5g02370
malus_domestica	MD02G1262000.v1.1 MD07G1058400.v1.1
prunus_persica	Prupe.2G069900_v2.0.a1
pyrus_communis	pycom02g22400 pycom07g04460
rosa_chinensis	RchiOBHm_Chr7g0197741
rosa_laevigata	RLG00000003914
rosa_multiflora	Rmu_sc0000758.1_g000014 Rmu_sc0006732.1_g000011 Rmu_sc0024289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258260 Rroxscaffold_7G00180220
rosa_rugosa	Rorug07G0042600 Rorug07G0042600 Rorug07G0042700 Rorug07G0042700 Rorug07G0042800
rosa_samantha	Rh2BG076300 Rh2CG078500 Rh7AG167100 Rh7BG169400 Rh7CG175800 Rh7DG168900
rosa_wichuraiana	Rw1G013650 Rw4G021910 Rw7G014540 Rw7G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AciI	CCGC	4 cut(s)	11, 469, 529, 597
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	2 cut(s)	407, 550
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	5 cut(s)	260, 502, 540, 602, 620
AluI	AGCT	5 cut(s)	260, 502, 540, 602, 620
Alw21I	GWGCWC	2 cut(s)	542, 604
AlwI	GGATC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	2 cut(s)	97, 187
ApeKI	GCWGC	3 cut(s)	422, 489, 502
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	187, 235, 556
AsuHPI	GGTGA	2 cut(s)	145, 155
AsuNHI	GCTAGC	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	235, 556
AxyI	CCTNAGG	1 cut(s)	414
BanII	GRGCYC	2 cut(s)	542, 604
Bbv12I	GWGCWC	2 cut(s)	542, 604
BbvI	GCAGC	3 cut(s)	409, 489, 501
BceAI	ACGGC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	176, 318
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	3 cut(s)	423, 490, 503
BlsI	GCNGC	3 cut(s)	424, 491, 504
Bme18I	GGWCC	2 cut(s)	235, 556
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	187, 235, 556
BmiI	GGNNCC	1 cut(s)	188
BmsI	GCATC	4 cut(s)	112, 152, 456, 501
BmtI	GCTAGC	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	182, 552
BsaWI	WCCGGW	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	182, 552
BseGI	GGATG	2 cut(s)	103, 167
BseMII	CTCAG	2 cut(s)	405, 489
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	38, 66
BseXI	GCAGC	3 cut(s)	409, 489, 501
BshFI	GGCC	2 cut(s)	99, 189
BsiHKAI	GWGCWC	2 cut(s)	542, 604
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	99, 189
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	542, 604
Bsp143I	GATC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	552
BspACI	CCGC	4 cut(s)	11, 469, 529, 597
BspANI	GGCC	2 cut(s)	99, 189
BspCNI	CTCAG	2 cut(s)	406, 490
BspLI	GGNNCC	1 cut(s)	188
BspOI	GCTAGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	182, 552
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	101, 319
BstDEI	CTNAG	3 cut(s)	261, 414, 498
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	103, 167
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 537
BstPAI	GACNNNNGTC	1 cut(s)	611
BstSFI	CTRYAG	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	409, 489, 501
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	99, 189
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	103, 167
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	229, 403, 495
Cac8I	GCNNGC	2 cut(s)	101, 319
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	187, 235, 556
Csp6I	GTAC	2 cut(s)	406, 549
CviAII	CATG	4 cut(s)	22, 350, 428, 553
CviQI	GTAC	2 cut(s)	406, 549
DdeI	CTNAG	3 cut(s)	261, 414, 498
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	2 cut(s)	26, 612
Ecl136II	GAGCTC	2 cut(s)	540, 602
Eco130I	CCWWGG	1 cut(s)	552
Eco24I	GRGCYC	2 cut(s)	542, 604
Eco47I	GGWCC	2 cut(s)	235, 556
Eco53kI	GAGCTC	2 cut(s)	540, 602
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	2 cut(s)	540, 602
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	552
EcoT22I	ATGCAT	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	542, 604
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	25, 353, 431, 556
FatI	CATG	4 cut(s)	21, 349, 427, 552
FauI	CCCGC	1 cut(s)	536
Fnu4HI	GCNGC	3 cut(s)	423, 490, 503
FokI	GGATG	2 cut(s)	90, 174
FriOI	GRGCYC	2 cut(s)	542, 604
Fsp4HI	GCNGC	3 cut(s)	423, 490, 503
FspBI	CTAG	2 cut(s)	176, 318
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	3 cut(s)	423, 490, 503
HaeIII	GGCC	2 cut(s)	99, 189
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	4 cut(s)	25, 353, 431, 556
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HinfI	GANTC	3 cut(s)	201, 458, 607
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	145, 155
Hpy166II	GTNNAC	2 cut(s)	369, 549
Hpy188I	TCNGA	4 cut(s)	300, 510, 606, 617
Hpy188III	TCNNGA	2 cut(s)	329, 377
Hpy8I	GTNNAC	2 cut(s)	369, 549
Hpy99I	CGWCG	3 cut(s)	95, 98, 617
HpyAV	CCTTC	3 cut(s)	97, 226, 425
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	404, 579
HpyCH4V	TGCA	2 cut(s)	165, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 537
HpyF3I	CTNAG	3 cut(s)	261, 414, 498
HpySE526I	ACGT	2 cut(s)	404, 579
Hsp92II	CATG	4 cut(s)	25, 353, 431, 556
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	3 cut(s)	599, 607, 617
Lsp1109I	GCAGC	3 cut(s)	409, 489, 501
LweI	GCATC	4 cut(s)	112, 152, 456, 501
MaeI	CTAG	2 cut(s)	176, 318
MaeII	ACGT	2 cut(s)	404, 579
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	2 cut(s)	136, 523
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	542, 604
MluCI	AATT	2 cut(s)	357, 453
MlyI	GAGTC	2 cut(s)	452, 601
MmeI	TCCRAC	3 cut(s)	416, 595, 629
MnlI	CCTC	9 cut(s)	59, 84, 87, 159, 192, 234, 282, 409, 587
Mph1103I	ATGCAT	1 cut(s)	167
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	154, 537
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	373
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	4 cut(s)	25, 353, 431, 556
NlaIV	GGNNCC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	167
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	3 cut(s)	424, 491, 504
PleI	GAGTC	2 cut(s)	452, 601
PpsI	GAGTC	2 cut(s)	452, 601
Ppu21I	YACGTR	1 cut(s)	405
PshAI	GACNNNNGTC	1 cut(s)	611
PshBI	ATTAAT	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	483
Psp124BI	GAGCTC	2 cut(s)	542, 604
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	3 cut(s)	187, 235, 556
RsaI	GTAC	2 cut(s)	407, 550
RsaNI	GTAC	2 cut(s)	406, 549
SacI	GAGCTC	2 cut(s)	542, 604
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	3 cut(s)	423, 490, 503
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	3 cut(s)	187, 235, 556
SchI	GAGTC	2 cut(s)	452, 601
SduI	GDGCHC	2 cut(s)	542, 604
SfaNI	GCATC	4 cut(s)	112, 152, 456, 501
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	235, 556
Sse9I	AATT	2 cut(s)	357, 453
SsiI	CCGC	4 cut(s)	11, 469, 529, 597
SspMI	CTAG	2 cut(s)	176, 318
SstI	GAGCTC	2 cut(s)	542, 604
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	407, 582
TaqI	TCGA	3 cut(s)	39, 90, 520
TasI	AATT	2 cut(s)	357, 453
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	3 cut(s)	229, 403, 502
TseI	GCWGC	3 cut(s)	422, 489, 502
TspDTI	ATGAA	2 cut(s)	324, 444
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	3 cut(s)	229, 403, 502
VpaK11BI	GGWCC	2 cut(s)	235, 556
VspI	ATTAAT	1 cut(s)	195
XspI	CTAG	2 cut(s)	176, 318
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.