AT2G38710

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004168
Physical Location & Seq
Reverse (-)
16184259 .. 16187273
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38710.1

Sequence Viewer

Length: 645 bp
ATGGTGTCGGCGAACAGAGAAATGGCTGTTTACTGTTTCGACACTTTGGTCTCTCACTACAACAATGAAGAGACTCCACCACCTGCCTTTGAAGAGGCCAATCATCCATTGTTTGTTACCTGGAAGAAAATAGTGAATGGTGGAGAGCCTCGGTTGCGTGGATGTATTGGTACACTGGAAGCACGCCGCTTGATCAGTGGCTTCAAGGATTATGCCTTGACAAGTGCCTTGAGGGATCGCAGGTTCCCACCTATACAGGCCAAAGAATTGCCATCTCTGCAGTGTACGGTGTCTGTCTTGACTGATTATGAAGATGCAGAAGATTACCTTGATTGGGAGGTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACCTGAGACTAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGGCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAATGGTGTAATAACAGAAGCAGTGCGTAGGCGAATCAATCTAACGCGTTACCAGAGTACATTATTCAGCATGCATTATAGCGAATACCTTTCATATGTGAAGGCGACCAGGGGCGTTGTTGGCCCGGTTATTAATGGGATCAACAAGCACGCCTTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

214

Amino Acids

24.24

Weight (kDa)

6.32

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMMECR1 PF01871 11 - 183 3.6e-46 AMMECR1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 91
AasI GACNNNNNNGTC 1 cut(s) 47
Acc36I ACCTGC 2 cut(s) 91, 231
AccB1I GGYRCC 1 cut(s) 418
AccII CGCG 1 cut(s) 529
AciI CCGC 1 cut(s) 187
AclWI GGATC 2 cut(s) 243, 629
AfaI GTAC 3 cut(s) 172, 286, 541
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 2 cut(s) 92, 205
AjnI CCWGG 2 cut(s) 119, 590
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw26I GTCTC 3 cut(s) 55, 65, 374
AlwI GGATC 2 cut(s) 243, 629
AoxI GGCC 3 cut(s) 96, 258, 604
AseI ATTAAT 1 cut(s) 615
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 605
AsuC2I CCSGG 1 cut(s) 608
AxyI CCTNAGG 1 cut(s) 414
BaeI ACNNNNGTAYC 2 cut(s) 472, 505
BanI GGYRCC 1 cut(s) 418
BccI CCATC 1 cut(s) 280
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 2 cut(s) 121, 592
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 1 cut(s) 192
BcnI CCSGG 1 cut(s) 608
BcoDI GTCTC 3 cut(s) 55, 65, 374
BfmI CTRYAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 402
BfuAI ACCTGC 2 cut(s) 91, 231
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 121, 592, 608
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 2 cut(s) 245, 420
BmrFI CCNGG 3 cut(s) 121, 592, 608
BmsI GCATC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 149, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 180
Bse21I CCTNAGG 1 cut(s) 414
BseBI CCWGG 2 cut(s) 121, 592
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 149, 591
BseGI GGATG 2 cut(s) 103, 167
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 369, 405
BseNI ACTGG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 529
BshFI GGCC 3 cut(s) 98, 260, 606
BshNI GGYRCC 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 1 cut(s) 608
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 3 cut(s) 55, 65, 374
BsnI GGCC 3 cut(s) 98, 260, 606
Bso31I GGTCTC 1 cut(s) 55
Bsp143I GATC 3 cut(s) 192, 235, 621
BspACI CCGC 1 cut(s) 187
BspANI GGCC 3 cut(s) 98, 260, 606
BspCNI CTCAG 2 cut(s) 370, 406
BspDI ATCGAT 1 cut(s) 456
BspFNI CGCG 1 cut(s) 529
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 245, 420
BspMAI CTGCAG 1 cut(s) 282
BspMI ACCTGC 2 cut(s) 91, 231
BspPI GGATC 2 cut(s) 243, 629
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 149, 591
BssMI GATC 3 cut(s) 192, 235, 621
Bst2UI CCWGG 2 cut(s) 121, 592
Bst4CI ACNGT 2 cut(s) 35, 289
Bst6I CTCTTC 2 cut(s) 63, 87
BstC8I GCNNGC 4 cut(s) 184, 423, 554, 633
BstDEI CTNAG 2 cut(s) 378, 414
BstF5I GGATG 2 cut(s) 103, 167
BstFNI CGCG 1 cut(s) 529
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 3 cut(s) 195, 238, 624
BstMAI GTCTC 3 cut(s) 55, 65, 374
BstMBI GATC 3 cut(s) 192, 235, 621
BstMWI GCNNNNNNNGC 4 cut(s) 154, 277, 418, 603
BstNI CCWGG 2 cut(s) 121, 592
BstNSI RCATGY 1 cut(s) 556
BstSCI CCNGG 3 cut(s) 119, 590, 606
BstSFI CTRYAG 1 cut(s) 278
BstUI CGCG 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 456
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 3 cut(s) 98, 260, 606
BsuTUI ATCGAT 1 cut(s) 456
BtsCI GGATG 2 cut(s) 103, 167
BtsI GCAGTG 2 cut(s) 287, 510
BtsIMutI CAGTG 4 cut(s) 173, 202, 287, 510
BveI ACCTGC 2 cut(s) 91, 231
Cac8I GCNNGC 4 cut(s) 184, 423, 554, 633
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 605
ClaI ATCGAT 1 cut(s) 456
Csp6I GTAC 3 cut(s) 171, 285, 540
CviAII CATG 3 cut(s) 350, 428, 553
CviJI RGCY 8 cut(s) 26, 98, 148, 201, 260, 425, 435, 606
CviKI_1 RGCY 8 cut(s) 26, 98, 148, 201, 260, 425, 435, 606
CviQI GTAC 3 cut(s) 171, 285, 540
DdeI CTNAG 2 cut(s) 378, 414
DpnI GATC 3 cut(s) 194, 237, 623
DpnII GATC 3 cut(s) 192, 235, 621
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 63, 87
EarI CTCTTC 2 cut(s) 63, 87
Eco31I GGTCTC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 119, 590
EcoT22I ATGCAT 1 cut(s) 558
FaeI CATG 3 cut(s) 353, 431, 556
FalI AAGNNNNNCTT 3 cut(s) 312, 344, 620
FatI CATG 3 cut(s) 349, 427, 552
FauNDI CATATG 1 cut(s) 577
FbaI TGATCA 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 2 cut(s) 90, 174
Fsp4HI GCNGC 1 cut(s) 187
GlaI GCGC 1 cut(s) 400
GluI GCNGC 1 cut(s) 187
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 3 cut(s) 98, 260, 606
HapII CCGG 1 cut(s) 608
HhaI GCGC 1 cut(s) 401
Hin1II CATG 3 cut(s) 353, 431, 556
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HinfI GANTC 3 cut(s) 73, 458, 516
HpaII CCGG 1 cut(s) 608
Hpy166II GTNNAC 4 cut(s) 31, 173, 285, 369
Hpy188III TCNNGA 2 cut(s) 298, 428
Hpy8I GTNNAC 4 cut(s) 31, 173, 285, 369
HpyAV CCTTC 2 cut(s) 425, 577
HpyCH4III ACNGT 2 cut(s) 35, 289
HpyCH4V TGCA 3 cut(s) 280, 317, 556
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 277, 418, 603
HpyF3I CTNAG 2 cut(s) 378, 414
Hsp92II CATG 3 cut(s) 353, 431, 556
HspAI GCGC 1 cut(s) 399
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 3 cut(s) 192, 235, 621
LweI GCATC 1 cut(s) 304
MaeIII GTNAC 2 cut(s) 115, 530
MalI GATC 3 cut(s) 194, 237, 623
MboI GATC 3 cut(s) 192, 235, 621
MboII GAAGA 5 cut(s) 80, 104, 136, 323, 332
MluCI AATT 1 cut(s) 266
MluI ACGCGT 1 cut(s) 527
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 6 cut(s) 88, 159, 225, 331, 409, 442
Mph1103I ATGCAT 1 cut(s) 558
MseI TTAA 1 cut(s) 615
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 3 cut(s) 121, 592, 608
MvaI CCWGG 2 cut(s) 121, 592
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 4 cut(s) 154, 277, 418, 603
NciI CCSGG 1 cut(s) 608
NdeI CATATG 1 cut(s) 577
NdeII GATC 3 cut(s) 192, 235, 621
NlaIII CATG 3 cut(s) 353, 431, 556
NlaIV GGNNCC 2 cut(s) 245, 420
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 1 cut(s) 556
PaeI GCATGC 1 cut(s) 556
PagI TCATGA 1 cut(s) 427
PaqCI CACCTGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 458, 516
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 615
Psp6I CCWGG 2 cut(s) 119, 590
PspGI CCWGG 2 cut(s) 119, 590
PspN4I GGNNCC 2 cut(s) 245, 420
PspPI GGNCC 1 cut(s) 605
PstI CTGCAG 1 cut(s) 282
RsaI GTAC 3 cut(s) 172, 286, 541
RsaNI GTAC 3 cut(s) 171, 285, 540
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 3 cut(s) 192, 235, 621
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 3 cut(s) 121, 592, 608
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SphI GCATGC 1 cut(s) 556
Sse9I AATT 1 cut(s) 266
SsiI CCGC 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 119, 590, 606
TaaI ACNGT 2 cut(s) 35, 289
TaqI TCGA 2 cut(s) 39, 456
TasI AATT 1 cut(s) 266
TatI WGTACW 1 cut(s) 539
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 2 cut(s) 458, 516
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 4 cut(s) 180, 202, 287, 510
TspDTI ATGAA 4 cut(s) 81, 324, 444, 564
TspRI CASTG 4 cut(s) 180, 202, 287, 510
VspI ATTAAT 1 cut(s) 615
XceI RCATGY 1 cut(s) 556
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.