Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000758.1

Orthogroup ID

OG0004168

Physical Location & Seq

Genomic Coordinates Reverse (-)

60425 .. 61895

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000758.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgtcctccagtgctatgagggaccgcaggtttcccccaatacaagctaaggaattaccatatttggaatgtacagtttccattttgactgattatgaaactgctgatgactaccttgattgggaggttgggaagcatggtataatcattgagtttactgatccgggctatggtacaaggcgcaatgcaacatacttgcctgaggttgctgcgcatgaaggttggactcaaatagaagcaattgactcattgatgcggaaagcagggtatactgggaccatcaccgagtcacttcggaagcgtatacgattgacccggtaccagagctcattatatacaatgcaccacagcgactacgtttcttatgtgaaggcaagcagaggcgcagctacatctggctccaagtccagcaatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMMECR1

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

6.91

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38710 AT2G38710 AT2G38710 AT2G38710
fragaria_vesca	FvH4_5g02370 FvH4_5g02370
malus_domestica	MD02G1262000.v1.1 MD07G1058400.v1.1
prunus_persica	Prupe.2G069900_v2.0.a1
pyrus_communis	pycom02g22400 pycom07g04460
rosa_chinensis	RchiOBHm_Chr7g0197741
rosa_laevigata	RLG00000003914
rosa_multiflora	Rmu_sc0000758.1_g000014 Rmu_sc0006732.1_g000011 Rmu_sc0024289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258260 Rroxscaffold_7G00180220
rosa_rugosa	Rorug07G0042600 Rorug07G0042600 Rorug07G0042700 Rorug07G0042700 Rorug07G0042800
rosa_samantha	Rh2BG076300 Rh2CG078500 Rh7AG167100 Rh7BG169400 Rh7CG175800 Rh7DG168900
rosa_wichuraiana	Rw1G013650 Rw4G021910 Rw7G014540 Rw7G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	18
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	318
AccI	GTMKAC	2 cut(s)	269, 304
AciI	CCGC	2 cut(s)	25, 256
AclWI	GGATC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	73, 175, 320
AfiI	CCNNNNNNNGG	2 cut(s)	121, 170
AluBI	AGCT	3 cut(s)	47, 327, 389
AluI	AGCT	3 cut(s)	47, 327, 389
Alw21I	GWGCWC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	209, 386
Asp718I	GGTACC	1 cut(s)	318
AspLEI	GCGC	3 cut(s)	183, 214, 386
AspS9I	GGNCC	2 cut(s)	22, 276
AsuC2I	CCSGG	2 cut(s)	165, 316
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	22, 276
AxyI	CCTNAGG	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	196, 398
BccI	CCATC	1 cut(s)	287
BcnI	CCSGG	2 cut(s)	165, 316
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	210, 387
BlsI	GCNGC	2 cut(s)	211, 388
Bme1390I	CCNGG	2 cut(s)	165, 316
Bme18I	GGWCC	2 cut(s)	22, 276
BmgT120I	GGNCC	2 cut(s)	22, 276
BmiI	GGNNCC	4 cut(s)	23, 277, 320, 400
BmrFI	CCNGG	2 cut(s)	165, 316
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	165, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 170
Bse1I	ACTGG	2 cut(s)	9, 277
Bse21I	CCTNAGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	121, 170
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	9, 277
BseXI	GCAGC	2 cut(s)	196, 398
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	164, 316
BslFI	GGGAC	2 cut(s)	35, 289
BslI	CCNNNNNNNGG	2 cut(s)	121, 170
BsmFI	GGGAC	2 cut(s)	35, 289
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	2 cut(s)	25, 256
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	4 cut(s)	23, 277, 320, 400
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	190
BsrGI	TGTACA	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	9, 277
BssMI	GATC	1 cut(s)	160
BssNAI	GTATAC	2 cut(s)	270, 305
Bst1107I	GTATAC	2 cut(s)	270, 305
Bst4CI	ACNGT	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	48, 201
BstHHI	GCGC	3 cut(s)	183, 214, 386
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	163, 314
BstV1I	GCAGC	2 cut(s)	196, 398
BstZ17I	GTATAC	2 cut(s)	270, 305
Bsu36I	CCTNAGG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	3 cut(s)	183, 214, 386
Cfr13I	GGNCC	2 cut(s)	22, 276
Csp6I	GTAC	3 cut(s)	72, 174, 319
CviAII	CATG	2 cut(s)	137, 215
CviJI	RGCY	5 cut(s)	47, 168, 327, 389, 399
CviKI_1	RGCY	5 cut(s)	47, 168, 327, 389, 399
CviQI	GTAC	3 cut(s)	72, 174, 319
DdeI	CTNAG	2 cut(s)	48, 201
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	22, 276
Eco53kI	GAGCTC	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	2 cut(s)	140, 218
FaqI	GGGAC	2 cut(s)	35, 289
FatI	CATG	2 cut(s)	136, 214
FblI	GTMKAC	2 cut(s)	269, 304
Fnu4HI	GCNGC	2 cut(s)	210, 387
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	210, 387
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	3 cut(s)	182, 213, 385
GluI	GCNGC	2 cut(s)	210, 387
HapII	CCGG	2 cut(s)	164, 316
HhaI	GCGC	3 cut(s)	183, 214, 386
Hin1II	CATG	2 cut(s)	140, 218
Hin6I	GCGC	3 cut(s)	181, 212, 384
HinP1I	GCGC	3 cut(s)	181, 212, 384
HinfI	GANTC	3 cut(s)	226, 245, 287
HpaII	CCGG	2 cut(s)	164, 316
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	3 cut(s)	156, 270, 305
Hpy188I	TCNGA	1 cut(s)	297
Hpy8I	GTNNAC	3 cut(s)	156, 270, 305
HpyAV	CCTTC	2 cut(s)	212, 364
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	188, 343
HpyF3I	CTNAG	2 cut(s)	48, 201
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	140, 218
HspAI	GCGC	3 cut(s)	181, 212, 384
KpnI	GGTACC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	9 cut(s)	13, 22, 177, 213, 249, 258, 329, 335, 381
Lsp1109I	GCAGC	2 cut(s)	196, 398
LweI	GCATC	1 cut(s)	243
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	53, 240
MlyI	GAGTC	3 cut(s)	220, 239, 296
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	12, 16, 118, 196, 374
MspI	CCGG	2 cut(s)	164, 316
MspR9I	CCNGG	2 cut(s)	165, 316
MunI	CAATTG	1 cut(s)	240
NciI	CCSGG	2 cut(s)	165, 316
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	140, 218
NlaIV	GGNNCC	4 cut(s)	23, 277, 320, 400
NmuCI	GTSAC	1 cut(s)	288
NsbI	TGCGCA	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	211, 388
PleI	GAGTC	3 cut(s)	220, 239, 295
PpsI	GAGTC	3 cut(s)	220, 239, 295
Psp124BI	GAGCTC	1 cut(s)	329
PspN4I	GGNNCC	4 cut(s)	23, 277, 320, 400
PspPI	GGNCC	2 cut(s)	22, 276
RsaI	GTAC	3 cut(s)	73, 175, 320
RsaNI	GTAC	3 cut(s)	72, 174, 319
SacI	GAGCTC	1 cut(s)	329
SatI	GCNGC	2 cut(s)	210, 387
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	2 cut(s)	22, 276
SchI	GAGTC	3 cut(s)	220, 239, 296
ScrFI	CCNGG	2 cut(s)	165, 316
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	9 cut(s)	32, 49, 117, 129, 207, 223, 329, 360, 391
SfaNI	GCATC	1 cut(s)	243
SinI	GGWCC	2 cut(s)	22, 276
Sse9I	AATT	2 cut(s)	53, 240
SsiI	CCGC	2 cut(s)	25, 256
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	163, 314
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	360
TasI	AATT	2 cut(s)	53, 240
TatI	WGTACW	1 cut(s)	71
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	2 cut(s)	209, 386
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	2 cut(s)	111, 231
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	2 cut(s)	22, 276
XmiI	GTMKAC	2 cut(s)	269, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.