Rmu_sc0006732.1_g000011

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006732.1
OG0004168
Physical Location & Seq
Reverse (-)
62189 .. 67723
5535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006732.1_g000011.1.cds

Sequence Viewer

Length: 741 bp
atggtgtcggcgaacaaggagatggtggtgtattgctttgacacgctcctggctcactacaacactgaagaagctcctcccccggcattcgaggatggccaacatccattgtttgttacttggaagaaaatggtgaatggtagtgagcctcgtttgcgtggatgtattggaacactagaacctcgtggcttggttaatggattcaaggactatactctaaacagtgctttgagggaccgcaggtttcccccaatacaagctaaggaattaccatatttggaatgtacagtttccattttgactgattatgaaactgctgatgactaccttgattgggaggttgggaagcatggtataatcattgagtttactgatccgggctatggtacaaggcgcaatgcaacatacttgcctgaggttgctgcgcatgaaggttggactcaaatagaagcaattgactcattgatgcggaaagcagggtatactgggaccatcaccgagtcacttcggaagcgtatacgattgacccggaaacctgcggataaagttgctgcagctggatttttcgtggtcgttcccgatttcttttatggcgaccctgtgaatcctgataatcctcaattcgaccgagagtcctggtttaaagctcatagcgagttcagtactgtcccgcataccaaccaaggctttgacatgagccacaataaccaacctttcaggccatcttttatacttcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

246

Amino Acids

28.02

Weight (kDa)

5.62

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 426
Acc36I ACCTGC 2 cut(s) 231, 544
AccI GTMKAC 2 cut(s) 482, 517
AciI CCGC 4 cut(s) 238, 469, 539, 671
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 3 cut(s) 286, 388, 664
AfiI CCNNNNNNNGG 2 cut(s) 334, 383
AgsI TTSAA 1 cut(s) 205
AhdI GACNNNNNGTC 1 cut(s) 631
AjnI CCWGG 2 cut(s) 48, 635
AluBI AGCT 4 cut(s) 74, 260, 557, 647
AluI AGCT 4 cut(s) 74, 260, 557, 647
AlwI GGATC 1 cut(s) 368
AoxI GGCC 2 cut(s) 97, 719
ApeKI GCWGC 3 cut(s) 422, 551, 554
AspLEI GCGC 2 cut(s) 396, 427
AspS9I GGNCC 2 cut(s) 235, 489
AsuC2I CCSGG 3 cut(s) 83, 378, 529
AsuHPI GGTGA 2 cut(s) 145, 487
AvaII GGWCC 2 cut(s) 235, 489
AxyI CCTNAGG 1 cut(s) 414
BalI TGGCCA 1 cut(s) 99
BauI CACGAG 1 cut(s) 183
BbvI GCAGC 3 cut(s) 409, 538, 566
BccI CCATC 4 cut(s) 16, 89, 500, 730
BciT130I CCWGG 2 cut(s) 50, 637
BcnI CCSGG 3 cut(s) 83, 378, 529
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 2 cut(s) 231, 544
BisI GCNGC 3 cut(s) 423, 552, 555
BlsI GCNGC 3 cut(s) 424, 553, 556
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 5 cut(s) 50, 83, 378, 529, 637
Bme18I GGWCC 2 cut(s) 235, 489
BmeRI GACNNNNNGTC 1 cut(s) 631
BmgT120I GGNCC 2 cut(s) 235, 489
BmiI GGNNCC 2 cut(s) 236, 490
BmrFI CCNGG 5 cut(s) 50, 83, 378, 529, 637
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 3 cut(s) 83, 378, 529
BsaJI CCNNGG 2 cut(s) 81, 682
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 383
Bse1I ACTGG 1 cut(s) 490
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 50, 637
BseDI CCNNGG 2 cut(s) 81, 682
BseGI GGATG 3 cut(s) 100, 103, 167
BseLI CCNNNNNNNGG 2 cut(s) 334, 383
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 3 cut(s) 409, 538, 566
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 2 cut(s) 99, 721
BsiEI CGRYCG 1 cut(s) 628
BsiSI CCGG 3 cut(s) 83, 377, 529
BslFI GGGAC 3 cut(s) 248, 502, 653
BslI CCNNNNNNNGG 2 cut(s) 334, 383
BsmFI GGGAC 3 cut(s) 248, 502, 653
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 2 cut(s) 99, 721
Bsp1407I TGTACA 1 cut(s) 284
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 4 cut(s) 238, 469, 539, 671
BspANI GGCC 2 cut(s) 99, 721
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 236, 490
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 2 cut(s) 231, 544
BspPI GGATC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 403
BsrGI TGTACA 1 cut(s) 284
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 2 cut(s) 81, 682
BssMI GATC 1 cut(s) 373
BssNAI GTATAC 2 cut(s) 483, 518
BssSI CACGAG 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 682
Bst1107I GTATAC 2 cut(s) 483, 518
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 50, 637
Bst4CI ACNGT 3 cut(s) 224, 289, 667
BstAUI TGTACA 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 261, 414
BstF5I GGATG 3 cut(s) 100, 103, 167
BstHHI GCGC 2 cut(s) 396, 427
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 2 cut(s) 50, 637
BstSCI CCNGG 5 cut(s) 48, 81, 376, 527, 635
BstSFI CTRYAG 1 cut(s) 552
BstV1I GCAGC 3 cut(s) 409, 538, 566
BstZ17I GTATAC 2 cut(s) 483, 518
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 2 cut(s) 99, 721
BtsCI GGATG 3 cut(s) 100, 103, 167
BtsIMutI CAGTG 2 cut(s) 63, 229
BveI ACCTGC 2 cut(s) 231, 544
CfoI GCGC 2 cut(s) 396, 427
Cfr13I GGNCC 2 cut(s) 235, 489
Csp6I GTAC 3 cut(s) 285, 387, 663
CviAII CATG 3 cut(s) 350, 428, 694
CviQI GTAC 3 cut(s) 285, 387, 663
DdeI CTNAG 2 cut(s) 261, 414
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
DraI TTTAAA 1 cut(s) 643
DriI GACNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 97
Eam1105I GACNNNNNGTC 1 cut(s) 631
Eco130I CCWWGG 1 cut(s) 682
Eco47I GGWCC 2 cut(s) 235, 489
Eco57I CTGAAG 1 cut(s) 87
Eco81I CCTNAGG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 48, 635
EcoT14I CCWWGG 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 682
FaeI CATG 3 cut(s) 353, 431, 697
FaqI GGGAC 3 cut(s) 248, 502, 653
FatI CATG 3 cut(s) 349, 427, 693
FauI CCCGC 1 cut(s) 678
FblI GTMKAC 2 cut(s) 482, 517
Fnu4HI GCNGC 3 cut(s) 423, 552, 555
FokI GGATG 3 cut(s) 90, 107, 174
Fsp4HI GCNGC 3 cut(s) 423, 552, 555
FspBI CTAG 1 cut(s) 176
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 2 cut(s) 395, 426
GluI GCNGC 3 cut(s) 423, 552, 555
HaeIII GGCC 2 cut(s) 99, 721
HapII CCGG 3 cut(s) 83, 377, 529
HhaI GCGC 2 cut(s) 396, 427
Hin1II CATG 3 cut(s) 353, 431, 697
Hin6I GCGC 2 cut(s) 394, 425
HinP1I GCGC 2 cut(s) 394, 425
HinfI GANTC 6 cut(s) 201, 439, 458, 500, 604, 632
HpaII CCGG 3 cut(s) 83, 377, 529
HphI GGTGA 2 cut(s) 145, 487
Hpy166II GTNNAC 3 cut(s) 369, 483, 518
Hpy188I TCNGA 1 cut(s) 510
Hpy188III TCNNGA 2 cut(s) 578, 608
Hpy8I GTNNAC 3 cut(s) 369, 483, 518
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 3 cut(s) 224, 289, 667
HpyCH4V TGCA 2 cut(s) 401, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 261, 414
Hsp92II CATG 3 cut(s) 353, 431, 697
HspAI GCGC 2 cut(s) 394, 425
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 51, 79
Lsp1109I GCAGC 3 cut(s) 409, 538, 566
LweI GCATC 1 cut(s) 456
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 115, 501
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 2 cut(s) 80, 136
MfeI CAATTG 1 cut(s) 453
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 266, 453, 620
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 4 cut(s) 433, 452, 509, 641
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 8 cut(s) 85, 87, 159, 192, 225, 331, 409, 627
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 195, 642
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 3 cut(s) 83, 377, 529
MspR9I CCNGG 5 cut(s) 50, 83, 378, 529, 637
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 2 cut(s) 50, 637
MwoI GCNNNNNNNGC 1 cut(s) 154
NciI CCSGG 3 cut(s) 83, 378, 529
NdeII GATC 1 cut(s) 373
NlaIII CATG 3 cut(s) 353, 431, 697
NlaIV GGNNCC 2 cut(s) 236, 490
NmuCI GTSAC 1 cut(s) 501
NsbI TGCGCA 1 cut(s) 426
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 201, 604
PkrI GCNGC 3 cut(s) 424, 553, 556
PleI GAGTC 4 cut(s) 433, 452, 508, 640
PpsI GAGTC 4 cut(s) 433, 452, 508, 640
Psp6I CCWGG 2 cut(s) 48, 635
PspGI CCWGG 2 cut(s) 48, 635
PspN4I GGNNCC 2 cut(s) 236, 490
PspPI GGNCC 2 cut(s) 235, 489
PstI CTGCAG 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 3 cut(s) 286, 388, 664
RsaNI GTAC 3 cut(s) 285, 387, 663
SaqAI TTAA 2 cut(s) 195, 642
SatI GCNGC 3 cut(s) 423, 552, 555
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 2 cut(s) 235, 489
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 4 cut(s) 433, 452, 509, 641
ScrFI CCNGG 5 cut(s) 50, 83, 378, 529, 637
SfaNI GCATC 1 cut(s) 456
SfcI CTRYAG 1 cut(s) 552
SinI GGWCC 2 cut(s) 235, 489
Sse9I AATT 3 cut(s) 266, 453, 620
SsiI CCGC 4 cut(s) 238, 469, 539, 671
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 5 cut(s) 48, 81, 376, 527, 635
StyI CCWWGG 1 cut(s) 682
TaaI ACNGT 3 cut(s) 224, 289, 667
TaqI TCGA 2 cut(s) 90, 624
TaqII GACCGA 1 cut(s) 642
TasI AATT 3 cut(s) 266, 453, 620
TatI WGTACW 2 cut(s) 284, 662
TfiI GAWTC 2 cut(s) 201, 604
Tru1I TTAA 2 cut(s) 195, 642
Tru9I TTAA 2 cut(s) 195, 642
TscAI CASTG 2 cut(s) 70, 229
TseFI GTSAC 1 cut(s) 501
TseI GCWGC 3 cut(s) 422, 551, 554
Tsp45I GTSAC 1 cut(s) 501
TspDTI ATGAA 3 cut(s) 324, 444, 725
TspRI CASTG 2 cut(s) 70, 229
VpaK11BI GGWCC 2 cut(s) 235, 489
XmiI GTMKAC 2 cut(s) 482, 517
XspI CTAG 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.