Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004168

Physical Location & Seq

Genomic Coordinates Reverse (-)

10017973 .. 10025644

Gene Structure 7672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G069900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTGTCGGCGACGAAGGAGATGGTGGCTTACTGCTTCGACACTCTCCTTGCTCACTACAACAGCGAAGAACCTCCTGCCCCAGCCTTCGATGAGGGCCAACATCCATTGTTTGTTACTTGGAAGAAAGTGGTGAATGGTAGTGAGACTCGTTTGCGTGGATGCATTGGAACACTAGAAGCTCGTAGCTTGATGAATGGATTCAAGGACTATGCTCTAAACAGTGCTTTGAAGGACCGTAGGTTCCCCCCAATACAACTGAAGGAATTACCTTATTTGGAATGTACAGTTTCCATTCTGACTGATTATGAAACTGCTAGCCACTACCTTGATTGGGAGATTGGAAAACATGGTATAATTATTGAGTTCACTGATCCTGAATATAGTACAAGGCGCAGCGCCACATACTTGCCTGAGATTGCTGCACATGAAGCTTGGACAAAAATAGAAGCAATTGACTCATTGATGCGGAAAGCTGGTTATAATGGCACCATCACTGAATCACTTCGGAAACGTATAAAATTGACCCGCTACCAGAGTACCTTATGTACAATGCACCACAGTGACTATGTTTCCTATGTTAAGGCAACCAGAGGCGCAGCTCCGTCTATTATTGGCGCTAAACCAGGCAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMMECR1

Protein Analysis

213

Amino Acids

23.91

Weight (kDa)

7.09

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38710 AT2G38710 AT2G38710 AT2G38710
fragaria_vesca	FvH4_5g02370 FvH4_5g02370
malus_domestica	MD02G1262000.v1.1 MD07G1058400.v1.1
prunus_persica	Prupe.2G069900_v2.0.a1
pyrus_communis	pycom02g22400 pycom07g04460
rosa_chinensis	RchiOBHm_Chr7g0197741
rosa_laevigata	RLG00000003914
rosa_multiflora	Rmu_sc0000758.1_g000014 Rmu_sc0006732.1_g000011 Rmu_sc0024289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258260 Rroxscaffold_7G00180220
rosa_rugosa	Rorug07G0042600 Rorug07G0042600 Rorug07G0042700 Rorug07G0042700 Rorug07G0042800
rosa_samantha	Rh2BG076300 Rh2CG078500 Rh7AG167100 Rh7BG169400 Rh7CG175800 Rh7DG168900
rosa_wichuraiana	Rw1G013650 Rw4G021910 Rw7G014540 Rw7G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	488
AciI	CCGC	2 cut(s)	469, 529
AclWI	GGATC	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	4 cut(s)	286, 388, 541, 550
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	205, 232
AjnI	CCWGG	1 cut(s)	625
AleI	CACNNNNGTG	1 cut(s)	561
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	182, 189, 434, 476, 602
AluI	AGCT	5 cut(s)	182, 189, 434, 476, 602
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	396, 422, 599
Asp700I	GAANNNNTTC	2 cut(s)	200, 504
AspLEI	GCGC	4 cut(s)	396, 401, 599, 620
AspS9I	GGNCC	2 cut(s)	97, 235
AsuHPI	GGTGA	1 cut(s)	145
AsuNHI	GCTAGC	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	523, 556
BanI	GGYRCC	1 cut(s)	488
BbvI	GCAGC	3 cut(s)	408, 409, 611
BccI	CCATC	2 cut(s)	16, 500
BciT130I	CCWGG	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	176, 318
BfoI	RGCGCY	2 cut(s)	402, 621
BisI	GCNGC	3 cut(s)	397, 423, 600
BlsI	GCNGC	3 cut(s)	398, 424, 601
Bme1390I	CCNGG	1 cut(s)	627
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	97, 235
BmiI	GGNNCC	2 cut(s)	245, 490
BmrFI	CCNGG	1 cut(s)	627
BmsI	GCATC	2 cut(s)	152, 456
BmtI	GCTAGC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	627
BseGI	GGATG	2 cut(s)	103, 167
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	408, 409, 611
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	99
Bsp1407I	TGTACA	2 cut(s)	284, 548
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	2 cut(s)	469, 529
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	245, 490
BspOI	GCTAGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	488
BsrGI	TGTACA	2 cut(s)	284, 548
BssMI	GATC	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	4 cut(s)	224, 239, 289, 563
BstAUI	TGTACA	2 cut(s)	284, 548
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	103, 167
BstH2I	RGCGCY	2 cut(s)	402, 621
BstHHI	GCGC	4 cut(s)	396, 401, 599, 620
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	627
BstSCI	CCNGG	1 cut(s)	625
BstV1I	GCAGC	3 cut(s)	408, 409, 611
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	103, 167
BtsIMutI	CAGTG	4 cut(s)	229, 369, 495, 568
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	4 cut(s)	396, 401, 599, 620
Cfr13I	GGNCC	2 cut(s)	97, 235
Csp6I	GTAC	4 cut(s)	285, 387, 540, 549
CviAII	CATG	2 cut(s)	350, 428
CviJI	RGCY	9 cut(s)	29, 86, 99, 182, 189, 321, 434, 476, 602
CviKI_1	RGCY	9 cut(s)	29, 86, 99, 182, 189, 321, 434, 476, 602
CviQI	GTAC	4 cut(s)	285, 387, 540, 549
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	167
FaeI	CATG	2 cut(s)	353, 431
FatI	CATG	2 cut(s)	349, 427
FauI	CCCGC	1 cut(s)	536
Fnu4HI	GCNGC	3 cut(s)	397, 423, 600
FokI	GGATG	2 cut(s)	90, 174
Fsp4HI	GCNGC	3 cut(s)	397, 423, 600
FspBI	CTAG	2 cut(s)	176, 318
GlaI	GCGC	4 cut(s)	395, 400, 598, 619
GluI	GCNGC	3 cut(s)	397, 423, 600
GsaI	CCCAGC	1 cut(s)	86
HaeII	RGCGCY	2 cut(s)	402, 621
HaeIII	GGCC	1 cut(s)	99
HhaI	GCGC	4 cut(s)	396, 401, 599, 620
Hin1II	CATG	2 cut(s)	353, 431
Hin6I	GCGC	4 cut(s)	394, 399, 597, 618
HinP1I	GCGC	4 cut(s)	394, 399, 597, 618
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	4 cut(s)	148, 201, 458, 500
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	2 cut(s)	300, 510
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	369
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	10, 97, 226, 256
HpyCH4III	ACNGT	4 cut(s)	224, 239, 289, 563
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	3 cut(s)	165, 425, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	2 cut(s)	353, 431
HspAI	GCGC	4 cut(s)	394, 399, 597, 618
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	607
LpnPI	CCDG	8 cut(s)	90, 96, 390, 426, 462, 548, 604, 612
Lsp1109I	GCAGC	3 cut(s)	408, 409, 611
LweI	GCATC	2 cut(s)	152, 456
MaeI	CTAG	2 cut(s)	176, 318
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	115, 563
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	2 cut(s)	80, 136
MfeI	CAATTG	1 cut(s)	453
MluCI	AATT	4 cut(s)	266, 357, 453, 521
MlyI	GAGTC	2 cut(s)	142, 452
MnlI	CCTC	3 cut(s)	84, 88, 587
Mph1103I	ATGCAT	1 cut(s)	167
MroXI	GAANNNNTTC	2 cut(s)	200, 504
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	627
MteI	GCGCNGCGC	1 cut(s)	397
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	1 cut(s)	373
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	2 cut(s)	353, 431
NlaIV	GGNNCC	2 cut(s)	245, 490
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	561
PdmI	GAANNNNTTC	2 cut(s)	200, 504
PfeI	GAWTC	2 cut(s)	201, 500
PkrI	GCNGC	3 cut(s)	398, 424, 601
PleI	GAGTC	2 cut(s)	142, 452
PpsI	GAGTC	2 cut(s)	142, 452
PsiI	TTATAA	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	625
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	2 cut(s)	245, 490
PspPI	GGNCC	2 cut(s)	97, 235
RsaI	GTAC	4 cut(s)	286, 388, 541, 550
RsaNI	GTAC	4 cut(s)	285, 387, 540, 549
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	3 cut(s)	397, 423, 600
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	97, 235
SchI	GAGTC	2 cut(s)	142, 452
ScrFI	CCNGG	1 cut(s)	627
SfaNI	GCATC	2 cut(s)	152, 456
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	561
Sse9I	AATT	4 cut(s)	266, 357, 453, 521
SsiI	CCGC	2 cut(s)	469, 529
SspMI	CTAG	2 cut(s)	176, 318
StyD4I	CCNGG	1 cut(s)	625
TaaI	ACNGT	4 cut(s)	224, 239, 289, 563
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	39, 90
TasI	AATT	4 cut(s)	266, 357, 453, 521
TatI	WGTACW	3 cut(s)	284, 386, 548
TfiI	GAWTC	2 cut(s)	201, 500
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	4 cut(s)	229, 376, 502, 568
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	3 cut(s)	396, 422, 599
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	3 cut(s)	209, 324, 444
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	4 cut(s)	229, 376, 502, 568
VpaK11BI	GGWCC	1 cut(s)	235
XmnI	GAANNNNTTC	2 cut(s)	200, 504
XspI	CTAG	2 cut(s)	176, 318
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.