Rw7G017360

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004168
Physical Location & Seq
Reverse (-)
18088041 .. 18089258
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017360.1

Sequence Viewer

Length: 207 bp
ATGAAGGTTGGGAAGCATGGTATAATCATTGAGTTTACTAATCCGGGCTATGGTACAAGGCGCAATGCAACATACTTGCCTGAGGTTGCTGCGCATGAAGGTTGGACTCAAATAGAAGCAATTGACTCATTGATGCGCGACTACGTTTCTAATGTGAAGGCAAGCAGAGGCGCAGCTACATCTGGCTCCAAGTCCAGCAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

68

Amino Acids

7.37

Weight (kDa)

9.22

Isoelectric Point (pI)

26.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMMECR1 PF01871 2 - 46 3.1e-08 AMMECR1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AccII CGCG 1 cut(s) 138
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 50
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 89, 173
AspLEI GCGC 4 cut(s) 63, 94, 138, 173
AsuC2I CCSGG 1 cut(s) 45
AxyI CCTNAGG 1 cut(s) 81
BbvI GCAGC 2 cut(s) 76, 185
BcnI CCSGG 1 cut(s) 45
BisI GCNGC 2 cut(s) 90, 174
BlsI GCNGC 2 cut(s) 91, 175
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 76, 185
Bsh1236I CGCG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 4 cut(s) 63, 94, 138, 173
BstSCI CCNGG 1 cut(s) 43
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 76, 185
Bsu36I CCTNAGG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 163
CfoI GCGC 4 cut(s) 63, 94, 138, 173
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 17, 95
CviJI RGCY 3 cut(s) 48, 176, 186
CviKI_1 RGCY 3 cut(s) 48, 176, 186
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 81
FaeI CATG 2 cut(s) 20, 98
FaiI YATR 5 cut(s) 18, 23, 51, 73, 96
FatI CATG 2 cut(s) 16, 94
Fnu4HI GCNGC 2 cut(s) 90, 174
Fsp4HI GCNGC 2 cut(s) 90, 174
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 4 cut(s) 62, 93, 137, 172
GluI GCNGC 2 cut(s) 90, 174
HapII CCGG 1 cut(s) 44
HhaI GCGC 4 cut(s) 63, 94, 138, 173
Hin1II CATG 2 cut(s) 20, 98
Hin6I GCGC 4 cut(s) 61, 92, 136, 171
HinP1I GCGC 4 cut(s) 61, 92, 136, 171
HinfI GANTC 2 cut(s) 106, 125
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 92, 151
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 20, 98
HspAI GCGC 4 cut(s) 61, 92, 136, 171
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 3 cut(s) 57, 93, 168
Lsp1109I GCAGC 2 cut(s) 76, 185
LweI GCATC 1 cut(s) 123
MaeII ACGT 1 cut(s) 144
MfeI CAATTG 1 cut(s) 120
MluCI AATT 1 cut(s) 120
MlyI GAGTC 2 cut(s) 100, 119
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 2 cut(s) 76, 161
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 120
MvnI CGCG 1 cut(s) 138
NciI CCSGG 1 cut(s) 45
NlaIII CATG 2 cut(s) 20, 98
NlaIV GGNNCC 1 cut(s) 187
NsbI TGCGCA 1 cut(s) 93
PkrI GCNGC 2 cut(s) 91, 175
PleI GAGTC 2 cut(s) 100, 119
PpsI GAGTC 2 cut(s) 100, 119
PspN4I GGNNCC 1 cut(s) 187
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SatI GCNGC 2 cut(s) 90, 174
SchI GAGTC 2 cut(s) 100, 119
ScrFI CCNGG 1 cut(s) 45
SetI ASST 5 cut(s) 9, 87, 103, 147, 178
SfaNI GCATC 1 cut(s) 123
Sse9I AATT 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 43
TaiI ACGT 1 cut(s) 147
TasI AATT 1 cut(s) 120
TseI GCWGC 2 cut(s) 89, 173
TspDTI ATGAA 2 cut(s) 17, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.