Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004168

Physical Location & Seq

Genomic Coordinates Forward (+)

52567919 .. 52572073

Gene Structure 4155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00258260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTGTCGGCGAGCAAGGAGATGGTGGTGTATTGCTTTGACACGCTCCTGGCTCACTACAACACTGAAGAAGCTCCTCTCCCGGCATTCGAGGATGGCCAACATCCATTGTTTGTTACTTGGAAGAAAATGGTGAATGGTAGTGAGCCTCGTTTGCGTGGATGTATTGGAACACTAGAACCTCGTGGCTTGGTTAATGGATTCAAGGACTATACTCTAAACAGGTATTATCATGAATCTTGGTACTTTGTATCGATTCATGCAGGCGTGCAAATTGTACATGCGTGCTTTGAGGGACCGCAGGTTCCCCCAATACAAGCTAAGGAATTACCATATTTGGAATGTACAGTTTCCATTTTGACTGATTATGAAACTGCTGACGACTACCTTGATTGGGAGGTTGGGAAGCATGGTATAATCATTGAGTTTACTGATCCGGGCTATGGTACAAGGCGCAATGCAACATACTTGCCTGAGGTTGCTGCGCATGAAGGTTGGACTCAAATAGAAGCAATTGATTCATTGATGCGGAAAGCAGGCTATACTGGGACCATCACCGAGTCACTTCGGAAGCGTATACGATTGACCCGCTACCAGAGCTCATTATATACAATGCACCACAGCGACTACGTTTCTTATGTGAAGACAAGCAGAGGTGCAGCTACATCTGTCTCCAAGACCAGCAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMMECR1

Protein Analysis

230

Amino Acids

26.12

Weight (kDa)

5.98

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMMECR1	PF01871	11 - 73	4.6e-07	AMMECR1
AMMECR1	PF01871	93 - 201	6.5e-26	AMMECR1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38710 AT2G38710 AT2G38710 AT2G38710
fragaria_vesca	FvH4_5g02370 FvH4_5g02370
malus_domestica	MD02G1262000.v1.1 MD07G1058400.v1.1
prunus_persica	Prupe.2G069900_v2.0.a1
pyrus_communis	pycom02g22400 pycom07g04460
rosa_chinensis	RchiOBHm_Chr7g0197741
rosa_laevigata	RLG00000003914
rosa_multiflora	Rmu_sc0000758.1_g000014 Rmu_sc0006732.1_g000011 Rmu_sc0024289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258260 Rroxscaffold_7G00180220
rosa_rugosa	Rorug07G0042600 Rorug07G0042600 Rorug07G0042700 Rorug07G0042700 Rorug07G0042800
rosa_samantha	Rh2BG076300 Rh2CG078500 Rh7AG167100 Rh7BG169400 Rh7CG175800 Rh7DG168900
rosa_wichuraiana	Rw1G013650 Rw4G021910 Rw7G014540 Rw7G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	577
AciI	CCGC	3 cut(s)	299, 529, 589
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	4 cut(s)	245, 279, 346, 448
AfiI	CCNNNNNNNGG	2 cut(s)	394, 443
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	48
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	74, 320, 600, 662
AluI	AGCT	4 cut(s)	74, 320, 600, 662
Alw21I	GWGCWC	1 cut(s)	602
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	482, 659
AspLEI	GCGC	2 cut(s)	456, 487
AspS9I	GGNCC	2 cut(s)	296, 549
AsuC2I	CCSGG	2 cut(s)	83, 438
AsuHPI	GGTGA	2 cut(s)	145, 547
AvaII	GGWCC	2 cut(s)	296, 549
AxyI	CCTNAGG	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	469, 671
BccI	CCATC	3 cut(s)	16, 89, 560
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	2 cut(s)	83, 438
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	483, 660
BlsI	GCNGC	2 cut(s)	484, 661
Bme1390I	CCNGG	3 cut(s)	50, 83, 438
Bme18I	GGWCC	2 cut(s)	296, 549
BmgT120I	GGNCC	2 cut(s)	296, 549
BmiI	GGNNCC	3 cut(s)	297, 306, 550
BmrFI	CCNGG	3 cut(s)	50, 83, 438
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	1 cut(s)	516
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	650
Bpu10I	CCTNAGC	1 cut(s)	321
BpuMI	CCSGG	2 cut(s)	83, 438
Bsa29I	ATCGAT	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 443
Bse1I	ACTGG	1 cut(s)	550
Bse21I	CCTNAGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	50
BseCI	ATCGAT	1 cut(s)	254
BseGI	GGATG	3 cut(s)	100, 103, 167
BseLI	CCNNNNNNNGG	2 cut(s)	394, 443
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	469, 671
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	83, 437
BslFI	GGGAC	2 cut(s)	309, 562
BslI	CCNNNNNNNGG	2 cut(s)	394, 443
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	2 cut(s)	309, 562
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp1407I	TGTACA	2 cut(s)	277, 344
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	3 cut(s)	299, 529, 589
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	466
BspDI	ATCGAT	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	297, 306, 550
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	463
BsrGI	TGTACA	2 cut(s)	277, 344
BsrI	ACTGG	1 cut(s)	550
BssMI	GATC	1 cut(s)	433
BssNAI	GTATAC	1 cut(s)	578
BssSI	CACGAG	1 cut(s)	183
Bst1107I	GTATAC	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	349
BstAUI	TGTACA	2 cut(s)	277, 344
BstC8I	GCNNGC	5 cut(s)	13, 265, 269, 286, 538
BstDEI	CTNAG	2 cut(s)	321, 474
BstF5I	GGATG	3 cut(s)	100, 103, 167
BstHHI	GCGC	2 cut(s)	456, 487
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 597
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	48, 81, 436
BstV1I	GCAGC	2 cut(s)	469, 671
BstV2I	GAAGAC	1 cut(s)	650
BstZ17I	GTATAC	1 cut(s)	578
Bsu15I	ATCGAT	1 cut(s)	254
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	100, 103, 167
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	5 cut(s)	13, 265, 269, 286, 538
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	456, 487
Cfr13I	GGNCC	2 cut(s)	296, 549
ClaI	ATCGAT	1 cut(s)	254
Csp6I	GTAC	4 cut(s)	244, 278, 345, 447
CviAII	CATG	5 cut(s)	233, 260, 281, 410, 488
CviQI	GTAC	4 cut(s)	244, 278, 345, 447
DdeI	CTNAG	2 cut(s)	321, 474
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	602
Eco47I	GGWCC	2 cut(s)	296, 549
Eco53kI	GAGCTC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	474
EcoICRI	GAGCTC	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	5 cut(s)	236, 263, 284, 413, 491
FaqI	GGGAC	2 cut(s)	309, 562
FatI	CATG	5 cut(s)	232, 259, 280, 409, 487
FauI	CCCGC	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	483, 660
FokI	GGATG	3 cut(s)	90, 107, 174
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	2 cut(s)	483, 660
FspBI	CTAG	1 cut(s)	176
FspI	TGCGCA	1 cut(s)	486
GlaI	GCGC	2 cut(s)	455, 486
GluI	GCNGC	2 cut(s)	483, 660
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	83, 437
HhaI	GCGC	2 cut(s)	456, 487
Hin1II	CATG	5 cut(s)	236, 263, 284, 413, 491
Hin6I	GCGC	2 cut(s)	454, 485
HinP1I	GCGC	2 cut(s)	454, 485
HinfI	GANTC	6 cut(s)	201, 236, 256, 499, 518, 560
HpaII	CCGG	2 cut(s)	83, 437
HphI	GGTGA	2 cut(s)	145, 547
Hpy166II	GTNNAC	2 cut(s)	429, 578
Hpy188I	TCNGA	1 cut(s)	570
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	429, 578
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	5 cut(s)	263, 271, 461, 616, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 597
HpyF3I	CTNAG	2 cut(s)	321, 474
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	5 cut(s)	236, 263, 284, 413, 491
HspAI	GCGC	2 cut(s)	454, 485
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	51, 79
Lsp1109I	GCAGC	2 cut(s)	469, 671
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	115, 561
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	80, 136, 655
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	1 cut(s)	602
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	273, 326, 513
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	493, 569
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	8 cut(s)	85, 87, 159, 192, 286, 391, 469, 647
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	2 cut(s)	83, 437
MspR9I	CCNGG	3 cut(s)	50, 83, 438
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	154, 597
NciI	CCSGG	2 cut(s)	83, 438
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	5 cut(s)	236, 263, 284, 413, 491
NlaIV	GGNNCC	3 cut(s)	297, 306, 550
NmuCI	GTSAC	1 cut(s)	561
NsbI	TGCGCA	1 cut(s)	486
NspI	RCATGY	1 cut(s)	284
PagI	TCATGA	1 cut(s)	232
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	201, 236, 256, 518
PkrI	GCNGC	2 cut(s)	484, 661
PleI	GAGTC	2 cut(s)	493, 568
PpsI	GAGTC	2 cut(s)	493, 568
Psp124BI	GAGCTC	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	3 cut(s)	297, 306, 550
PspPI	GGNCC	2 cut(s)	296, 549
RsaI	GTAC	4 cut(s)	245, 279, 346, 448
RsaNI	GTAC	4 cut(s)	244, 278, 345, 447
SacI	GAGCTC	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	483, 660
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	2 cut(s)	296, 549
SchI	GAGTC	2 cut(s)	493, 569
ScrFI	CCNGG	3 cut(s)	50, 83, 438
SduI	GDGCHC	1 cut(s)	602
SfaNI	GCATC	1 cut(s)	516
SinI	GGWCC	2 cut(s)	296, 549
Sse9I	AATT	3 cut(s)	273, 326, 513
SsiI	CCGC	3 cut(s)	299, 529, 589
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	48, 81, 436
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	2 cut(s)	90, 254
TasI	AATT	3 cut(s)	273, 326, 513
TatI	WGTACW	2 cut(s)	277, 344
TfiI	GAWTC	4 cut(s)	201, 236, 256, 518
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	2 cut(s)	482, 659
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	5 cut(s)	248, 249, 384, 504, 510
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	296, 549
XceI	RCATGY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	577
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.