Rroxscaffold_7G00180220

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004168
Physical Location & Seq
Reverse (-)
19711198 .. 19712126
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180220.1

Sequence Viewer

Length: 309 bp
ATGATGGACATACCGAAGAGATTTCATTCGAAGAAGAAGCTGATGGAATGGATGAGGATGTGGACAGTTGGGAAGCATGGTATAATCATTGAGTTTACTGATCCGGGCTATGGTACAAGGCGCAATGCAACATACTTGCTCGAGGTTGCTGCACATGAAGGTTGGACTCAAATAGAAGCAATTGACTCATTGATGCGGAAAGCAGGGTATACCGGGACCATCACCGAGTCACTTCGTAAGCGTATACGATTGACCCGTACCGAGCTCATTATATACAATGCACCACAAGCGACTACGTTTCTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

102

Amino Acids

11.93

Weight (kDa)

9.91

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMMECR1 PF01871 15 - 86 5.2e-11 AMMECR1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 209, 244
AciI CCGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 95
AfaI GTAC 2 cut(s) 115, 259
AfiI CCNNNNNNNGG 1 cut(s) 110
AluBI AGCT 2 cut(s) 40, 265
AluI AGCT 2 cut(s) 40, 265
Alw21I GWGCWC 1 cut(s) 267
AlwI GGATC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 2 cut(s) 105, 214
AsuHPI GGTGA 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 37, 227
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BcnI CCSGG 2 cut(s) 105, 214
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 105, 214
Bme18I GGWCC 1 cut(s) 216
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 105, 214
BmsI GCATC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 105, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 130
BseGI GGATG 2 cut(s) 57, 63
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 104, 213
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 95
BspT104I TTCGAA 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 130
BssMI GATC 1 cut(s) 100
BssNAI GTATAC 2 cut(s) 210, 245
Bst1107I GTATAC 2 cut(s) 210, 245
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 29
BstF5I GGATG 2 cut(s) 57, 63
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 103, 212
BstV1I GCAGC 1 cut(s) 136
BstZ17I GTATAC 2 cut(s) 210, 245
BtsCI GGATG 2 cut(s) 57, 63
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 114, 258
CviAII CATG 2 cut(s) 77, 155
CviJI RGCY 3 cut(s) 40, 108, 265
CviKI_1 RGCY 3 cut(s) 40, 108, 265
CviQI GTAC 2 cut(s) 114, 258
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 2 cut(s) 80, 158
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 76, 154
FblI GTMKAC 2 cut(s) 209, 244
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 64, 70
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 150
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 150
HapII CCGG 2 cut(s) 104, 213
HhaI GCGC 1 cut(s) 123
Hin1II CATG 2 cut(s) 80, 158
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 3 cut(s) 166, 185, 227
HpaII CCGG 2 cut(s) 104, 213
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 4 cut(s) 63, 96, 210, 245
Hpy8I GTNNAC 4 cut(s) 63, 96, 210, 245
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 3 cut(s) 128, 152, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 2 cut(s) 80, 158
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 117, 189, 226
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 183
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 228
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 28, 43, 46
MfeI CAATTG 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 1 cut(s) 180
MlyI GAGTC 3 cut(s) 160, 179, 236
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 2 cut(s) 48, 136
MspI CCGG 2 cut(s) 104, 213
MspR9I CCNGG 2 cut(s) 105, 214
MunI CAATTG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 2 cut(s) 105, 214
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 80, 158
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 228
NspV TTCGAA 1 cut(s) 29
PaeR7I CTCGAG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 3 cut(s) 160, 179, 235
PpsI GAGTC 3 cut(s) 160, 179, 235
Psp124BI GAGCTC 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 216
PspXI VCTCGAGB 1 cut(s) 140
RsaI GTAC 2 cut(s) 115, 259
RsaNI GTAC 2 cut(s) 114, 258
SacI GAGCTC 1 cut(s) 267
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 3 cut(s) 160, 179, 236
ScrFI CCNGG 2 cut(s) 105, 214
SduI GDGCHC 1 cut(s) 267
SetI ASST 5 cut(s) 42, 147, 163, 267, 299
SfaNI GCATC 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 140
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 216
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 196
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 103, 212
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 299
TaqI TCGA 2 cut(s) 29, 141
TasI AATT 1 cut(s) 180
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 2 cut(s) 14, 171
VpaK11BI GGWCC 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 2 cut(s) 209, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.