Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004168

Physical Location & Seq

Genomic Coordinates Reverse (-)

20503265 .. 20508252

Gene Structure 4988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTGTCGGCGAACAAGGACATGGTGGCTTACTGCTTCGATACTCTCCTCGCTCACTACACCACCGACCAACCTCCTCCCCCTGCTTTCGACGACGGCCAGCATCCATTGTTTGTTACTTGGAAGAAAGTGATGAATGGTGCTGAGCCTCGTTTGCGTGGATGCATAGGAACACTAGAAGCTCGGGGCTTGATTAATGGCTTCAGGGACTACGCCCTAAACAGTGCTTTGAAGGACCGGAGATTTCCTCCAATACAGGCTAAGGAAATACCTTATTTGGAATGCACAGTTTCCATTCTGACTGATTATGAAACTGCTAGTAACTACCTTGATTGGGAGATTGGAAAACATGGTATAATTATTGAGTTTACTGATCCTGACTATAACACAAGGCGCAGTGCTACGTACTTGCCTGAGATTGCTGCCCATGAAGGTTGGACAAAAACTGAAGCAATTGACTCATTGATGCGGAAATCTGGTTACAATGGGAACATCACTGAGTCGCTTCGGAACCGTATACGGTTGACCCGCTACCAGAGCTCCCTATGCACGATGGACCATAATGACTATGTTTCCTATGTCAAGGAAACCAGAGGTGGAGCTCCCTGTGTAGTTGGTGTTAACTCTGGCAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMMECR1

Protein Analysis

213

Amino Acids

23.91

Weight (kDa)

6.21

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38710 AT2G38710 AT2G38710 AT2G38710
fragaria_vesca	FvH4_5g02370 FvH4_5g02370
malus_domestica	MD02G1262000.v1.1 MD07G1058400.v1.1
prunus_persica	Prupe.2G069900_v2.0.a1
pyrus_communis	pycom02g22400 pycom07g04460
rosa_chinensis	RchiOBHm_Chr7g0197741
rosa_laevigata	RLG00000003914
rosa_multiflora	Rmu_sc0000758.1_g000014 Rmu_sc0006732.1_g000011 Rmu_sc0024289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258260 Rroxscaffold_7G00180220
rosa_rugosa	Rorug07G0042600 Rorug07G0042600 Rorug07G0042700 Rorug07G0042700 Rorug07G0042800
rosa_samantha	Rh2BG076300 Rh2CG078500 Rh7AG167100 Rh7BG169400 Rh7CG175800 Rh7DG168900
rosa_wichuraiana	Rw1G013650 Rw4G021910 Rw7G014540 Rw7G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	517
AciI	CCGC	3 cut(s)	469, 529, 634
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	187, 468
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	3 cut(s)	182, 540, 602
AluI	AGCT	3 cut(s)	182, 540, 602
Alw21I	GWGCWC	2 cut(s)	542, 604
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	422, 630
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	235, 556
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	235, 556
BanII	GRGCYC	2 cut(s)	542, 604
Bbv12I	GWGCWC	2 cut(s)	542, 604
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	547
BceAI	ACGGC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	176, 318
BisI	GCNGC	3 cut(s)	423, 631, 634
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	3 cut(s)	424, 632, 635
Bme18I	GGWCC	2 cut(s)	235, 556
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	235, 556
BmiI	GGNNCC	1 cut(s)	512
BmsI	GCATC	3 cut(s)	112, 152, 456
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	103, 167
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	3 cut(s)	135, 405, 489
BseRI	GAGGAG	2 cut(s)	38, 66
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	542, 604
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	542, 604
Bsp143I	GATC	1 cut(s)	373
Bsp1720I	GCTNAGC	1 cut(s)	144
BspACI	CCGC	3 cut(s)	469, 529, 634
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	3 cut(s)	136, 406, 490
BspLI	GGNNCC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	368
BssMI	GATC	1 cut(s)	373
BssNAI	GTATAC	1 cut(s)	518
Bst1107I	GTATAC	1 cut(s)	518
Bst4CI	ACNGT	4 cut(s)	224, 289, 515, 522
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	4 cut(s)	144, 261, 414, 498
BstF5I	GGATG	2 cut(s)	103, 167
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 537, 546
BstSNI	TACGTA	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	103, 167
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	229, 403, 495
Cac8I	GCNNGC	1 cut(s)	101
CaiI	CAGNNNCTG	1 cut(s)	636
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	235, 556
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	3 cut(s)	22, 350, 428
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	4 cut(s)	144, 261, 414, 498
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	97
Ecl136II	GAGCTC	2 cut(s)	540, 602
Eco105I	TACGTA	1 cut(s)	405
Eco24I	GRGCYC	2 cut(s)	542, 604
Eco47I	GGWCC	2 cut(s)	235, 556
Eco53kI	GAGCTC	2 cut(s)	540, 602
Eco57I	CTGAAG	2 cut(s)	187, 468
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	2 cut(s)	540, 602
EcoT22I	ATGCAT	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	542, 604
FaeI	CATG	3 cut(s)	25, 353, 431
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	21, 349, 427
FauI	CCCGC	1 cut(s)	536
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	423, 631, 634
FokI	GGATG	2 cut(s)	90, 174
FriOI	GRGCYC	2 cut(s)	542, 604
Fsp4HI	GCNGC	3 cut(s)	423, 631, 634
FspBI	CTAG	2 cut(s)	176, 318
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	3 cut(s)	423, 631, 634
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	3 cut(s)	25, 353, 431
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	2 cut(s)	525, 622
HindII	GTYRAC	2 cut(s)	525, 622
HinfI	GANTC	2 cut(s)	458, 500
HpaI	GTTAAC	1 cut(s)	622
HpaII	CCGG	1 cut(s)	238
Hpy166II	GTNNAC	4 cut(s)	369, 518, 525, 622
Hpy188I	TCNGA	2 cut(s)	300, 510
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	4 cut(s)	369, 518, 525, 622
Hpy99I	CGWCG	2 cut(s)	95, 98
HpyAV	CCTTC	2 cut(s)	226, 425
HpyCH4III	ACNGT	4 cut(s)	224, 289, 515, 522
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	3 cut(s)	165, 285, 549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 537, 546
HpyF3I	CTNAG	4 cut(s)	144, 261, 414, 498
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	3 cut(s)	25, 353, 431
HspAI	GCGC	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	622
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	3 cut(s)	545, 599, 607
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	3 cut(s)	112, 152, 456
MaeI	CTAG	2 cut(s)	176, 318
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	3 cut(s)	115, 320, 479
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	542, 604
MluCI	AATT	2 cut(s)	357, 453
MlyI	GAGTC	2 cut(s)	452, 509
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	6 cut(s)	59, 84, 87, 159, 258, 587
Mph1103I	ATGCAT	1 cut(s)	167
MseI	TTAA	2 cut(s)	195, 621
MspA1I	CMGCKG	1 cut(s)	636
MspI	CCGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	3 cut(s)	154, 537, 546
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	25, 353, 431
NlaIV	GGNNCC	1 cut(s)	512
NsiI	ATGCAT	1 cut(s)	167
PctI	GAATGC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	424, 632, 635
PleI	GAGTC	2 cut(s)	452, 508
PpsI	GAGTC	2 cut(s)	452, 508
Ppu21I	YACGTR	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	195
Psp124BI	GAGCTC	2 cut(s)	542, 604
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	2 cut(s)	235, 556
PstNI	CAGNNNCTG	1 cut(s)	636
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SacI	GAGCTC	2 cut(s)	542, 604
SaqAI	TTAA	2 cut(s)	195, 621
SatI	GCNGC	3 cut(s)	423, 631, 634
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	235, 556
SchI	GAGTC	2 cut(s)	452, 509
SduI	GDGCHC	2 cut(s)	542, 604
SetI	ASST	9 cut(s)	76, 184, 274, 330, 407, 436, 542, 598, 604
SfaNI	GCATC	3 cut(s)	112, 152, 456
SinI	GGWCC	2 cut(s)	235, 556
SnaBI	TACGTA	1 cut(s)	405
Sse9I	AATT	2 cut(s)	357, 453
SsiI	CCGC	3 cut(s)	469, 529, 634
SspMI	CTAG	2 cut(s)	176, 318
SstI	GAGCTC	2 cut(s)	542, 604
TaaI	ACNGT	4 cut(s)	224, 289, 515, 522
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	39, 90
TasI	AATT	2 cut(s)	357, 453
TauI	GCSGC	1 cut(s)	636
Tru1I	TTAA	2 cut(s)	195, 621
Tru9I	TTAA	2 cut(s)	195, 621
TscAI	CASTG	3 cut(s)	229, 403, 502
TseI	GCWGC	2 cut(s)	422, 630
TspDTI	ATGAA	3 cut(s)	149, 324, 444
TspRI	CASTG	3 cut(s)	229, 403, 502
VpaK11BI	GGWCC	2 cut(s)	235, 556
VspI	ATTAAT	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	517
XspI	CTAG	2 cut(s)	176, 318
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.