FvH4_5g02380

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013886
Physical Location & Seq
Forward (+)
1452820 .. 1454589
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02380.t1

Sequence Viewer

Length: 849 bp
ATGAGGGAGGACAAAAAGCAAAGCAAGGGAGGCTCCATCAACCCCAAGGCTGCATTGAAGCTCGAGCACTTGCAGAGGCTGGCTTTATGGACTGGCGGGGAAGCTTCCATTCCTTGTTTGGGAGCCTTGTTTGGGCACAAGTTGGCTTCTACTCAAGAGGGTCTGGATGTGCCTCCTGACCCTTCTATGGTTTCTTGCCAGAGCTGTGAAACGATTCTGCAGCCTGGCTTCAACTGTACTATTCGAGTTGAAACGAGTAGGGCAAAGGCACGACGAAGAAGTAAGAAGCCGGCTAATTTCACTTTCACTCAGAACAATGTGGTGTATACATGTCACTTCTGTTCTGAAAGTAATGTGAAGAGAGGGACTTCGCGTGGACATATGAAAGCGATATGCCCCCCAAAGATTAAGAAAGAAAAAGCTTCAAACTTGAAACCTGCTGAATCCAGTTCTCAGAAGTTGGCCACCCCAAAGAAGAGCACTGCAGGTGAGGATAAGGCTAGTAAATTGCAAATTGGAACTGCAACTCTGGATGAAGAGGTTCCTGCTGTGAATAAGTTCATCACTTCTTCAACAACAGATGAAGAGATACCTACTGTGGATAGTCCCATAACTCCTATGGTGAAACCTGTGATTACTTTGTTGGACTCGAAGAGAAAAAAGAGAAACAAATCGGCGTCCAAGAAACGACATGAACCTGAAGACAGTCCTGCCCCAGCCGATGTAGAAAACTCCGCCAGCACGACAAACAAACGGAGGAGAAAATCATGGACTAGTTTGAAGGAACTTGCTGACAGAAATCAGCAGAAGAAAAACATCAGCAATCTGTCAATCCCTTTCTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

283

Amino Acids

31.05

Weight (kDa)

9.82

Isoelectric Point (pI)

62.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 21 - 115 9e-12 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 476
Acc36I ACCTGC 2 cut(s) 445, 476
AccI GTMKAC 1 cut(s) 326
AccII CGCG 1 cut(s) 373
AciI CCGC 2 cut(s) 96, 735
AcoI YGGCCR 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 720
AcyI GRCGYC 1 cut(s) 677
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 119, 132, 187
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 7 cut(s) 58, 232, 251, 426, 433, 573, 781
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 4 cut(s) 61, 104, 204, 422
AluI AGCT 4 cut(s) 61, 104, 204, 422
Alw21I GWGCWC 2 cut(s) 69, 482
AlwNI CAGNNNCTG 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 50, 220
Asp700I GAANNNNTTC 3 cut(s) 213, 540, 557
AsuHPI GGTGA 2 cut(s) 500, 634
AvaI CYCGRG 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 2 cut(s) 69, 482
BbvI GCAGC 2 cut(s) 37, 232
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 225
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 2 cut(s) 501, 774
BfmI CTRYAG 2 cut(s) 218, 483
BfuAI ACCTGC 2 cut(s) 445, 476
BisI GCNGC 2 cut(s) 51, 221
BlsI GCNGC 2 cut(s) 52, 222
Bme1390I CCNGG 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 62
BmiI GGNNCC 3 cut(s) 34, 124, 543
BmrFI CCNGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 677
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 132, 187
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 97, 447
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 172, 538
BseLI CCNNNNNNNGG 3 cut(s) 119, 132, 187
BseMII CTCAG 2 cut(s) 323, 467
BseNI ACTGG 2 cut(s) 97, 447
BseRI GAGGAG 1 cut(s) 772
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 37, 232
BseYI CCCAGC 1 cut(s) 715
Bsh1236I CGCG 1 cut(s) 373
BshFI GGCC 1 cut(s) 464
BsiHKAI GWGCWC 2 cut(s) 69, 482
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 379, 591
BslI CCNNNNNNNGG 3 cut(s) 119, 132, 187
BsmFI GGGAC 2 cut(s) 379, 591
BsnI GGCC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 3 cut(s) 69, 138, 482
BspACI CCGC 2 cut(s) 96, 735
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 2 cut(s) 322, 466
BspFNI CGCG 1 cut(s) 373
BspLI GGNNCC 3 cut(s) 34, 124, 543
BspMAI CTGCAG 2 cut(s) 222, 487
BspMI ACCTGC 2 cut(s) 445, 476
BspQI GCTCTTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 2 cut(s) 97, 447
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 45
BssNAI GTATAC 1 cut(s) 327
BssNI GRCGYC 1 cut(s) 677
BssT1I CCWWGG 1 cut(s) 45
Bst1107I GTATAC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 236, 598, 707
Bst6I CTCTTC 5 cut(s) 353, 470, 531, 579, 647
BstACI GRCGYC 1 cut(s) 677
BstC8I GCNNGC 3 cut(s) 81, 291, 739
BstDEI CTNAG 2 cut(s) 309, 453
BstF5I GGATG 2 cut(s) 172, 538
BstFNI CGCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 2 cut(s) 218, 483
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 37, 232
BstV2I GAAGAC 1 cut(s) 708
BstZ17I GTATAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 464
BtsCI GGATG 2 cut(s) 172, 538
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 480
BveI ACCTGC 2 cut(s) 445, 476
Cac8I GCNNGC 3 cut(s) 81, 291, 739
CaiI CAGNNNCTG 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 289
CseI GACGC 1 cut(s) 666
Csp6I GTAC 1 cut(s) 237
CviAII CATG 4 cut(s) 330, 692, 768, 844
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 309, 453
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 5 cut(s) 353, 470, 531, 579, 647
EarI CTCTTC 5 cut(s) 353, 470, 531, 579, 647
EciI GGCGGA 1 cut(s) 724
Eco130I CCWWGG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 4 cut(s) 333, 695, 771, 847
FaqI GGGAC 2 cut(s) 379, 591
FatI CATG 4 cut(s) 329, 691, 767, 843
FauI CCCGC 1 cut(s) 89
FauNDI CATATG 1 cut(s) 381
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 2 cut(s) 51, 221
FokI GGATG 2 cut(s) 179, 545
Fsp4HI GCNGC 2 cut(s) 51, 221
FspBI CTAG 2 cut(s) 501, 774
GluI GCNGC 2 cut(s) 51, 221
GsaI CCCAGC 1 cut(s) 719
HaeIII GGCC 1 cut(s) 464
HapII CCGG 1 cut(s) 290
HgaI GACGC 1 cut(s) 666
Hin1I GRCGYC 1 cut(s) 677
Hin1II CATG 4 cut(s) 333, 695, 771, 847
HindIII AAGCTT 2 cut(s) 102, 420
HinfI GANTC 3 cut(s) 214, 443, 647
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 500, 634
Hpy166II GTNNAC 2 cut(s) 327, 377
Hpy188I TCNGA 3 cut(s) 312, 346, 456
Hpy188III TCNNGA 4 cut(s) 155, 164, 176, 530
Hpy8I GTNNAC 2 cut(s) 327, 377
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 192, 775
HpyCH4III ACNGT 3 cut(s) 236, 598, 707
HpyCH4V TGCA 6 cut(s) 53, 73, 220, 485, 511, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 2 cut(s) 309, 453
Hsp92I GRCGYC 1 cut(s) 677
Hsp92II CATG 4 cut(s) 333, 695, 771, 847
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
LguI GCTCTTC 1 cut(s) 470
LmnI GCTCC 2 cut(s) 38, 122
Lsp1109I GCAGC 2 cut(s) 37, 232
MaeI CTAG 2 cut(s) 501, 774
MaeIII GTNAC 1 cut(s) 332
MhlI GDGCHC 3 cut(s) 69, 138, 482
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 3 cut(s) 295, 506, 513
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 8 cut(s) 23, 69, 151, 183, 356, 484, 532, 750
Mox20I TGGCCA 1 cut(s) 464
MroNI GCCGGC 1 cut(s) 289
MroXI GAANNNNTTC 3 cut(s) 213, 540, 557
MscI TGGCCA 1 cut(s) 464
MseI TTAA 1 cut(s) 408
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 30
NaeI GCCGGC 1 cut(s) 291
NdeI CATATG 1 cut(s) 381
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 4 cut(s) 333, 695, 771, 847
NlaIV GGNNCC 3 cut(s) 34, 124, 543
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 1 cut(s) 333
PaeR7I CTCGAG 1 cut(s) 62
PaqCI CACCTGC 1 cut(s) 476
PciI ACATGT 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 470
PdiI GCCGGC 1 cut(s) 291
PdmI GAANNNNTTC 3 cut(s) 213, 540, 557
PfeI GAWTC 2 cut(s) 214, 443
PkrI GCNGC 2 cut(s) 52, 222
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
PscI ACATGT 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 715
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 34, 124, 543
PspXI VCTCGAGB 1 cut(s) 62
PstI CTGCAG 2 cut(s) 222, 487
PstNI CAGNNNCTG 1 cut(s) 79
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 2 cut(s) 51, 221
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 3 cut(s) 69, 138, 482
SfcI CTRYAG 2 cut(s) 218, 483
Sfr274I CTCGAG 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 62, 153
SmoI CTYRAG 2 cut(s) 62, 153
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 3 cut(s) 295, 506, 513
SsiI CCGC 2 cut(s) 96, 735
SspMI CTAG 2 cut(s) 501, 774
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 236, 598, 707
TaqI TCGA 3 cut(s) 63, 244, 650
TasI AATT 3 cut(s) 295, 506, 513
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 2 cut(s) 214, 443
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 2 cut(s) 50, 220
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 6 cut(s) 398, 549, 550, 597, 708, 832
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 1 cut(s) 487
XceI RCATGY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 2 cut(s) 115, 616
XhoI CTCGAG 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 3 cut(s) 213, 540, 557
XspI CTAG 2 cut(s) 501, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.