MD07G1059600.v1.1

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013886
Physical Location & Seq
Forward (+)
5535536 .. 5539801
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1059600.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGGCAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAAGAGGGTGCCAAACACCGCATTTGCGTCTACCAACAACATATCACTGAGAGAATTGACCGGGAAAAAGCAAACCAAGGGCGGCTCCTCCATCAATGCCAAGGCCGCGCTGAAGCTCGAGCACTTGCAGAGACTCATTGTGTGGACTGGTGCGGAGGCTTCTGTTCCTTCTCTGGGTGCATTATTTGGGCGCACCTTGGCCGCTGCCCAAGAGGCCATCGTTGTGCCCCCTGAACCTTCTCTCTTCCCTTGCCAGAGGATTGGTTGTGAAAAAATGGTGGAAGATTTGATTTCTGTTCGGAAATGTGAAACAGTTCTTCAGCCTGGCTTCAACTGCACTGTTCGAATTGAGAAAAATAGAGCAAAGGCCCGACGACGAAGTAAGAAACTTATTAATTTCTCTCAAAACAATGTAGTGTATACATGCCACTTCTGTTCACATCAGAATTTGAAGAGAGGGACTCCGAATGGACATATGAAAACGATATGCCCCCCTAAGGCCAAAACAACTTCGAAACTGAACCTCGCTAAGTCCATCTCCAAGAAGTTTGTCAACTCAAAGAAAACCACTGCAGGCGATGAGGTTAGTAAAGCGCATGAGATAGCTCCTTCCACAGGCGGAGAGATTCCTACGGTCGACACTCCTGCAGGCGAAGACGAGGTTAGTAAAGCTAATGAAGTAGCTCCTTCAGCAGGCACAGAGATTCCTAGCGTGGATACACCTGCAACTCCAGCGGTGAAGACTGGAATTACTTTGTTGTTGGGAGGGAAGAAGAGAAGGAGAAACAATTCAGCGACCAAGAAACCAGCTGAACCTGAGAGCAGTCCCACCTCAATAGGTGAAAACACAACTAGCACGTTAAACAAACGGAGGAGAAAATCGTGGACTAGTTTGAAGGAGATTGCCAAACGCAGTGATCACAGTAAAATGCGAAAAATCAGTTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

330

Amino Acids

35.23

Weight (kDa)

10.25

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 113 - 159 3.3e-08 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 769
Acc36I ACCTGC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 46
AccI GTMKAC 3 cut(s) 68, 458, 675
AccII CGCG 1 cut(s) 146
AciI CCGC 7 cut(s) 57, 120, 144, 191, 240, 657, 773
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 3 cut(s) 170, 341, 711
AfiI CCNNNNNNNGG 4 cut(s) 212, 535, 653, 731
AgsI TTSAA 3 cut(s) 370, 490, 934
AhlI ACTAGT 1 cut(s) 926
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 5 cut(s) 154, 644, 710, 722, 848
AluI AGCT 5 cut(s) 154, 644, 710, 722, 848
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 5 cut(s) 141, 237, 252, 405, 537
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 484
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 2 cut(s) 351, 826
AspLEI GCGC 3 cut(s) 148, 231, 634
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 787, 890
AsuII TTCGAA 2 cut(s) 382, 551
AvaI CYCGRG 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 534
BaeGI GKGCMC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 699, 785
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 137, 263, 581
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 748
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 163
BcuI ACTAGT 1 cut(s) 926
BfaI CTAG 3 cut(s) 747, 891, 927
BfmI CTRYAG 2 cut(s) 609, 684
BfuAI ACCTGC 1 cut(s) 769
BfuI GTATCC 1 cut(s) 748
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 4 cut(s) 121, 144, 240, 243
BlsI GCNGC 4 cut(s) 122, 145, 241, 244
Bme1390I CCNGG 2 cut(s) 100, 363
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 48, 124
BmrFI CCNGG 2 cut(s) 100, 363
BpiI GAAGAC 2 cut(s) 699, 785
BplI GAGNNNNNCTC 2 cut(s) 484, 516
BpmI CTGGAG 1 cut(s) 753
Bpu14I TTCGAA 2 cut(s) 382, 551
BpuMI CCSGG 1 cut(s) 100
BsaJI CCNNGG 3 cut(s) 114, 138, 234
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 535, 653, 731
Bse1I ACTGG 2 cut(s) 190, 787
Bse21I CCTNAGG 1 cut(s) 534
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 114, 138, 234
BseLI CCNNNNNNNGG 4 cut(s) 212, 535, 653, 731
BseMII CTCAG 2 cut(s) 77, 846
BseNI ACTGG 2 cut(s) 190, 787
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 675
BshFI GGCC 5 cut(s) 143, 239, 254, 407, 539
BshNI GGYRCC 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 511, 849
BslI CCNNNNNNNGG 4 cut(s) 212, 535, 653, 731
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 511, 849
BsnI GGCC 5 cut(s) 143, 239, 254, 407, 539
BsoBI CYCGRG 1 cut(s) 155
Bsp119I TTCGAA 2 cut(s) 382, 551
Bsp1286I GDGCHC 2 cut(s) 162, 267
Bsp143I GATC 1 cut(s) 955
BspACI CCGC 7 cut(s) 57, 120, 144, 191, 240, 657, 773
BspANI GGCC 5 cut(s) 143, 239, 254, 407, 539
BspCNI CTCAG 2 cut(s) 78, 847
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 48, 124
BspMAI CTGCAG 2 cut(s) 613, 688
BspMI ACCTGC 1 cut(s) 769
BspT104I TTCGAA 2 cut(s) 382, 551
BspT107I GGYRCC 1 cut(s) 46
BsrI ACTGG 2 cut(s) 190, 787
BssECI CCNNGG 3 cut(s) 114, 138, 234
BssMI GATC 1 cut(s) 955
BssNAI GTATAC 1 cut(s) 459
BssT1I CCWWGG 3 cut(s) 114, 138, 234
Bst1107I GTATAC 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 4 cut(s) 352, 379, 673, 962
Bst6I CTCTTC 3 cut(s) 287, 485, 806
BstBI TTCGAA 2 cut(s) 382, 551
BstC8I GCNNGC 3 cut(s) 613, 688, 733
BstDEI CTNAG 4 cut(s) 86, 534, 567, 855
BstENI CCTNNNNNAGG 2 cut(s) 651, 729
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 3 cut(s) 148, 231, 634
BstKTI GATC 1 cut(s) 958
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 955
BstMCI CGRYCG 1 cut(s) 675
BstMWI GCNNNNNNNGC 5 cut(s) 143, 251, 372, 728, 770
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 2 cut(s) 98, 361
BstSFI CTRYAG 2 cut(s) 609, 684
BstSLI GKGCMC 1 cut(s) 267
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 2 cut(s) 699, 785
BstXI CCANNNNNNTGG 1 cut(s) 299
BstZ17I GTATAC 1 cut(s) 459
Bsu36I CCTNAGG 1 cut(s) 534
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 5 cut(s) 143, 239, 254, 407, 539
BtgZI GCGATG 1 cut(s) 630
BtsI GCAGTG 2 cut(s) 606, 958
BtsIMutI CAGTG 4 cut(s) 83, 375, 606, 958
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 3 cut(s) 613, 688, 733
CfoI GCGC 3 cut(s) 148, 231, 634
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 54
CviAII CATG 2 cut(s) 462, 635
DdeI CTNAG 4 cut(s) 86, 534, 567, 855
DpnI GATC 1 cut(s) 957
DpnII GATC 1 cut(s) 955
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 3 cut(s) 287, 485, 806
EarI CTCTTC 3 cut(s) 287, 485, 806
EciI GGCGGA 1 cut(s) 672
Eco130I CCWWGG 3 cut(s) 114, 138, 234
Eco57I CTGAAG 3 cut(s) 170, 341, 711
Eco81I CCTNAGG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 155
EcoNI CCTNNNNNAGG 2 cut(s) 651, 729
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 114, 138, 234
ErhI CCWWGG 3 cut(s) 114, 138, 234
FaeI CATG 2 cut(s) 465, 638
FaiI YATR 7 cut(s) 80, 459, 463, 513, 515, 526, 636
FaqI GGGAC 2 cut(s) 511, 849
FatI CATG 2 cut(s) 461, 634
FauNDI CATATG 1 cut(s) 513
FbaI TGATCA 1 cut(s) 955
FblI GTMKAC 3 cut(s) 68, 458, 675
Fnu4HI GCNGC 4 cut(s) 121, 144, 240, 243
Fsp4HI GCNGC 4 cut(s) 121, 144, 240, 243
FspBI CTAG 3 cut(s) 747, 891, 927
GlaI GCGC 3 cut(s) 147, 230, 633
GluI GCNGC 4 cut(s) 121, 144, 240, 243
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 5 cut(s) 143, 239, 254, 407, 539
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 54
HhaI GCGC 3 cut(s) 148, 231, 634
Hin1II CATG 2 cut(s) 465, 638
Hin6I GCGC 3 cut(s) 146, 229, 632
HinP1I GCGC 3 cut(s) 146, 229, 632
HincII GTYRAC 2 cut(s) 592, 676
HindII GTYRAC 2 cut(s) 592, 676
HinfI GANTC 4 cut(s) 171, 499, 664, 742
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 787, 890
Hpy166II GTNNAC 7 cut(s) 69, 183, 459, 476, 592, 676, 924
Hpy188I TCNGA 3 cut(s) 339, 483, 504
Hpy8I GTNNAC 7 cut(s) 69, 183, 459, 476, 592, 676, 924
Hpy99I CGWCG 2 cut(s) 414, 417
HpyAV CCTTC 6 cut(s) 216, 285, 657, 735, 810, 928
HpyCH4III ACNGT 4 cut(s) 352, 379, 673, 962
HpyCH4IV ACGT 1 cut(s) 896
HpyCH4V TGCA 6 cut(s) 166, 218, 375, 611, 686, 764
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 251, 372, 728, 770
HpyF3I CTNAG 4 cut(s) 86, 534, 567, 855
HpySE526I ACGT 1 cut(s) 896
Hsp92II CATG 2 cut(s) 465, 638
HspAI GCGC 3 cut(s) 146, 229, 632
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 1 cut(s) 955
LmnI GCTCC 3 cut(s) 128, 649, 727
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 3 cut(s) 747, 891, 927
MaeII ACGT 1 cut(s) 896
MalI GATC 1 cut(s) 957
MboI GATC 1 cut(s) 955
MboII GAAGA 8 cut(s) 274, 332, 347, 502, 704, 790, 820, 823
MhlI GDGCHC 2 cut(s) 162, 267
MluCI AATT 6 cut(s) 92, 384, 433, 484, 786, 826
MlyI GAGTC 2 cut(s) 165, 493
MroXI GAANNNNTTC 2 cut(s) 351, 826
MseI TTAA 2 cut(s) 432, 899
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 3 cut(s) 242, 773, 848
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 100, 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 143, 251, 372, 728, 770
NciI CCSGG 1 cut(s) 100
NdeI CATATG 1 cut(s) 513
NdeII GATC 1 cut(s) 955
NlaIII CATG 2 cut(s) 465, 638
NlaIV GGNNCC 2 cut(s) 48, 124
NspI RCATGY 1 cut(s) 465
NspV TTCGAA 2 cut(s) 382, 551
PaeR7I CTCGAG 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 769
PdmI GAANNNNTTC 2 cut(s) 351, 826
PfeI GAWTC 2 cut(s) 664, 742
PkrI GCNGC 4 cut(s) 122, 145, 241, 244
PleI GAGTC 2 cut(s) 165, 493
PpsI GAGTC 2 cut(s) 165, 493
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 48, 124
PspPI GGNCC 1 cut(s) 406
PspXI VCTCGAGB 1 cut(s) 155
PstI CTGCAG 2 cut(s) 613, 688
PvuII CAGCTG 1 cut(s) 848
RseI CAYNNNNRTG 1 cut(s) 260
SalI GTCGAC 1 cut(s) 674
SaqAI TTAA 2 cut(s) 432, 899
SatI GCNGC 4 cut(s) 121, 144, 240, 243
Sau3AI GATC 1 cut(s) 955
Sau96I GGNCC 1 cut(s) 406
SbfI CCTGCAGG 1 cut(s) 688
SchI GAGTC 2 cut(s) 165, 493
ScrFI CCNGG 2 cut(s) 100, 363
SdaI CCTGCAGG 1 cut(s) 688
SduI GDGCHC 2 cut(s) 162, 267
SfcI CTRYAG 2 cut(s) 609, 684
Sfr274I CTCGAG 1 cut(s) 155
SfuI TTCGAA 2 cut(s) 382, 551
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SpeI ACTAGT 1 cut(s) 926
Sse8387I CCTGCAGG 1 cut(s) 688
Sse9I AATT 6 cut(s) 92, 384, 433, 484, 786, 826
SsiI CCGC 7 cut(s) 57, 120, 144, 191, 240, 657, 773
SspMI CTAG 3 cut(s) 747, 891, 927
StyD4I CCNGG 2 cut(s) 98, 361
StyI CCWWGG 3 cut(s) 114, 138, 234
TaaI ACNGT 4 cut(s) 352, 379, 673, 962
TaiI ACGT 1 cut(s) 899
TaqI TCGA 4 cut(s) 156, 382, 551, 675
TasI AATT 6 cut(s) 92, 384, 433, 484, 786, 826
TauI GCSGC 3 cut(s) 123, 146, 242
TfiI GAWTC 2 cut(s) 664, 742
Tru1I TTAA 2 cut(s) 432, 899
Tru9I TTAA 2 cut(s) 432, 899
TscAI CASTG 4 cut(s) 90, 382, 613, 958
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 530, 729
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 4 cut(s) 90, 382, 613, 958
VspI ATTAAT 1 cut(s) 432
XagI CCTNNNNNAGG 2 cut(s) 651, 729
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 465
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 3 cut(s) 68, 458, 675
XmnI GAANNNNTTC 2 cut(s) 351, 826
XspI CTAG 3 cut(s) 747, 891, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.