pycom07g07940

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013886
Physical Location & Seq
Reverse (-)
7270248 .. 7272724
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07940.1

Sequence Viewer

Length: 951 bp
ATGGGCAGGAGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGCTAAGAGGGTGCCAAACACTGCATTCACGTCTACCAACAACATATCACTGAGAGAAGAATTGACCGGGAAAAAGCAAACCAAGGGCGGTTCCTCCATCAATGCCAAGGCCGTGCTGAAGCTCGAGCACTTGCAGAGACTCGCTGTGTGGACTGGCACGGAGGCTTCTGTTCCTTCTCTGGGTGCATTCTTTGGGCGCACCTTGGCCGCTGCCCAAGAGGCGATCGCTGTGCCCCCTGAACCTTCTCTCTTCCCTTGCCAGAGATGTGAAACAGTTCTTCAGCCTGGCTTCAACTGCACTGTTCAAATTGAGAAAAATAGAGCAAAGGCACGACGACGAAGTAAGAAACTTATTAATTTCTCTCAAAACAATGTAGTGTATACATGCCACTTCTGTTCACATCGGAATTTGAAGAGAGGGACTCCGAATGGACATATGAAAATGATATGCCCCCCTAAGGCCAAAACAACTTCGAAACTGAACCTCGCTAGGTCCATCTCCAAGAAGTTTGTCAACTTAAAGAAGACCACTGCAGGCGATGAGGTTAGTAAAGCGGATGAGATAGCTCCTTCCACAGGTGAAGAAATTCCTACAGTCGACACTCCTGCAGGCGAAGACGAGGTTAGTAAAGCTAATGAAGTAGCTCCTTCAGCAGGCACAGAGATTCCTAGCGTGGATACACCTGCAACTCCAGCGATGAAGACTGGAATTACTTTGTTGTTGGGAGGGAAGAAGAGAAGGAGAAACAATTCGGCGGCCAAGAAAGCAGCTGAACCTGAGAGCAGTCCCACCTCAACAGCTGAAAACACAACTAGCACATCAAACAAACGGAGGAGAAAATCGTGGACTAGTTTGAAGGAGATTGCTAAACGCAGTGATCACAGTAACATGCGAAAAATCAGTTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

317

Amino Acids

33.85

Weight (kDa)

10.22

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 54 - 146 1.4e-12 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 730
Acc36I ACCTGC 1 cut(s) 730
AccB1I GGYRCC 1 cut(s) 49
AccI GTMKAC 3 cut(s) 71, 419, 636
AciI CCGC 4 cut(s) 126, 246, 593, 794
AcoI YGGCCR 2 cut(s) 243, 795
AcsI RAATTY 2 cut(s) 445, 624
AcuI CTGAAG 3 cut(s) 176, 302, 672
AfiI CCNNNNNNNGG 4 cut(s) 218, 496, 614, 692
AgsI TTSAA 4 cut(s) 331, 344, 451, 895
AhlI ACTAGT 1 cut(s) 887
AjiI CACGTC 1 cut(s) 69
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 7 cut(s) 41, 160, 605, 671, 683, 809, 839
AluI AGCT 7 cut(s) 41, 160, 605, 671, 683, 809, 839
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 4 cut(s) 147, 243, 498, 795
ApeKI GCWGC 2 cut(s) 248, 806
ApoI RAATTY 2 cut(s) 445, 624
AseI ATTAAT 1 cut(s) 393
AsiSI GCGATCGC 1 cut(s) 264
Asp700I GAANNNNTTC 3 cut(s) 312, 624, 787
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 531
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 629
AsuII TTCGAA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 531
AxyI CCTNAGG 1 cut(s) 495
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 49
BbsI GAAGAC 3 cut(s) 569, 660, 746
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 235, 818
BccI CCATC 2 cut(s) 143, 542
BceAI ACGGC 1 cut(s) 134
BcgI CGANNNNNNTGC 4 cut(s) 250, 284, 626, 660
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 709
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 887
BfaI CTAG 4 cut(s) 528, 708, 852, 888
BfmI CTRYAG 3 cut(s) 570, 630, 645
BfuAI ACCTGC 1 cut(s) 730
BfuI GTATCC 1 cut(s) 709
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 4 cut(s) 246, 249, 795, 807
BlsI GCNGC 4 cut(s) 247, 250, 796, 808
Bme1390I CCNGG 2 cut(s) 106, 324
Bme18I GGWCC 1 cut(s) 531
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 2 cut(s) 51, 130
BmrFI CCNGG 2 cut(s) 106, 324
BpiI GAAGAC 3 cut(s) 569, 660, 746
BplI GAGNNNNNCTC 2 cut(s) 445, 477
BpmI CTGGAG 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 106
BsaJI CCNNGG 3 cut(s) 120, 144, 240
Bsc4I CCNNNNNNNGG 4 cut(s) 218, 496, 614, 692
Bse1I ACTGG 2 cut(s) 196, 748
Bse21I CCTNAGG 1 cut(s) 495
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 120, 144, 240
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 4 cut(s) 218, 496, 614, 692
BseMII CTCAG 2 cut(s) 80, 807
BseNI ACTGG 2 cut(s) 196, 748
BseRI GAGGAG 8 cut(s) 33, 36, 39, 42, 45, 48, 51, 886
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 2 cut(s) 235, 818
BsgI GTGCAG 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 4 cut(s) 149, 245, 500, 797
BshNI GGYRCC 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 2 cut(s) 472, 810
BslI CCNNNNNNNGG 4 cut(s) 218, 496, 614, 692
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 2 cut(s) 472, 810
BsmI GAATGC 2 cut(s) 62, 224
BsnI GGCC 4 cut(s) 149, 245, 500, 797
BsoBI CYCGRG 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 2 cut(s) 168, 273
Bsp143I GATC 2 cut(s) 261, 916
BspACI CCGC 4 cut(s) 126, 246, 593, 794
BspANI GGCC 4 cut(s) 149, 245, 500, 797
BspCNI CTCAG 2 cut(s) 81, 808
BspLI GGNNCC 2 cut(s) 51, 130
BspMAI CTGCAG 2 cut(s) 574, 649
BspMI ACCTGC 1 cut(s) 730
BspT104I TTCGAA 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 49
BsrI ACTGG 2 cut(s) 196, 748
BssECI CCNNGG 3 cut(s) 120, 144, 240
BssMI GATC 2 cut(s) 261, 916
BssNAI GTATAC 1 cut(s) 420
BssT1I CCWWGG 3 cut(s) 120, 144, 240
Bst1107I GTATAC 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 4 cut(s) 313, 340, 634, 923
Bst6I CTCTTC 3 cut(s) 293, 446, 767
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 574, 649, 694
BstDEI CTNAG 4 cut(s) 42, 89, 495, 816
BstENI CCTNNNNNAGG 2 cut(s) 612, 690
BstF5I GGATG 1 cut(s) 601
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 264, 919
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 261, 916
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 5 cut(s) 257, 333, 689, 731, 803
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 2 cut(s) 426, 931
BstSCI CCNGG 2 cut(s) 104, 322
BstSFI CTRYAG 3 cut(s) 570, 630, 645
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 235, 818
BstV2I GAAGAC 3 cut(s) 569, 660, 746
BstZ17I GTATAC 1 cut(s) 420
Bsu36I CCTNAGG 1 cut(s) 495
BsuI GTATCC 1 cut(s) 709
BsuRI GGCC 4 cut(s) 149, 245, 500, 797
BtgZI GCGATG 2 cut(s) 591, 749
BtrI CACGTC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 3 cut(s) 57, 567, 919
BtsIMutI CAGTG 5 cut(s) 57, 86, 336, 567, 919
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 3 cut(s) 574, 649, 694
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 531
CviAII CATG 2 cut(s) 423, 928
DdeI CTNAG 4 cut(s) 42, 89, 495, 816
DpnI GATC 2 cut(s) 263, 918
DpnII GATC 2 cut(s) 261, 916
EaeI YGGCCR 2 cut(s) 243, 795
Eam1104I CTCTTC 3 cut(s) 293, 446, 767
EarI CTCTTC 3 cut(s) 293, 446, 767
Eco130I CCWWGG 3 cut(s) 120, 144, 240
Eco47I GGWCC 1 cut(s) 531
Eco57I CTGAAG 3 cut(s) 176, 302, 672
Eco81I CCTNAGG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 161
EcoNI CCTNNNNNAGG 2 cut(s) 612, 690
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 3 cut(s) 120, 144, 240
ErhI CCWWGG 3 cut(s) 120, 144, 240
FaeI CATG 2 cut(s) 426, 931
FaiI YATR 7 cut(s) 83, 420, 424, 474, 476, 487, 929
FaqI GGGAC 2 cut(s) 472, 810
FatI CATG 2 cut(s) 422, 927
FauNDI CATATG 1 cut(s) 474
FbaI TGATCA 1 cut(s) 916
FblI GTMKAC 3 cut(s) 71, 419, 636
Fnu4HI GCNGC 4 cut(s) 246, 249, 795, 807
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 4 cut(s) 246, 249, 795, 807
FspBI CTAG 4 cut(s) 528, 708, 852, 888
GlaI GCGC 1 cut(s) 236
GluI GCNGC 4 cut(s) 246, 249, 795, 807
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 4 cut(s) 149, 245, 500, 797
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 426, 931
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 2 cut(s) 553, 637
HindII GTYRAC 2 cut(s) 553, 637
HinfI GANTC 3 cut(s) 177, 460, 703
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 7 cut(s) 72, 189, 420, 437, 553, 637, 885
Hpy188I TCNGA 2 cut(s) 444, 465
Hpy8I GTNNAC 7 cut(s) 72, 189, 420, 437, 553, 637, 885
Hpy99I CGWCG 2 cut(s) 375, 378
HpyAV CCTTC 6 cut(s) 222, 291, 618, 696, 771, 889
HpyCH4III ACNGT 4 cut(s) 313, 340, 634, 923
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 7 cut(s) 62, 172, 224, 336, 572, 647, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 257, 333, 689, 731, 803
HpyF3I CTNAG 4 cut(s) 42, 89, 495, 816
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 2 cut(s) 426, 931
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 2 cut(s) 261, 916
LmnI GCTCC 3 cut(s) 38, 610, 688
Lsp1109I GCAGC 2 cut(s) 235, 818
MaeI CTAG 4 cut(s) 528, 708, 852, 888
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 923
MalI GATC 2 cut(s) 263, 918
MboI GATC 2 cut(s) 261, 916
MhlI GDGCHC 2 cut(s) 168, 273
MluCI AATT 7 cut(s) 98, 345, 394, 445, 624, 747, 787
MlyI GAGTC 2 cut(s) 171, 454
MroXI GAANNNNTTC 3 cut(s) 312, 624, 787
MseI TTAA 2 cut(s) 393, 557
MspA1I CMGCKG 3 cut(s) 248, 809, 839
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 2 cut(s) 106, 324
Mva1269I GAATGC 2 cut(s) 62, 224
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 5 cut(s) 257, 333, 689, 731, 803
NciI CCSGG 1 cut(s) 106
NdeI CATATG 1 cut(s) 474
NdeII GATC 2 cut(s) 261, 916
NlaIII CATG 2 cut(s) 426, 931
NlaIV GGNNCC 2 cut(s) 51, 130
NspI RCATGY 2 cut(s) 426, 931
NspV TTCGAA 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 161
PaqCI CACCTGC 1 cut(s) 730
PctI GAATGC 2 cut(s) 62, 224
PdmI GAANNNNTTC 3 cut(s) 312, 624, 787
PfeI GAWTC 1 cut(s) 703
PkrI GCNGC 4 cut(s) 247, 250, 796, 808
Ple19I CGATCG 1 cut(s) 264
PleI GAGTC 2 cut(s) 171, 454
PpsI GAGTC 2 cut(s) 171, 454
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 51, 130
PspPI GGNCC 1 cut(s) 531
PspXI VCTCGAGB 1 cut(s) 161
PstI CTGCAG 2 cut(s) 574, 649
PvuI CGATCG 1 cut(s) 264
PvuII CAGCTG 2 cut(s) 809, 839
RgaI GCGATCGC 1 cut(s) 264
SalI GTCGAC 1 cut(s) 635
SaqAI TTAA 2 cut(s) 393, 557
SatI GCNGC 4 cut(s) 246, 249, 795, 807
Sau3AI GATC 2 cut(s) 261, 916
Sau96I GGNCC 1 cut(s) 531
SbfI CCTGCAGG 1 cut(s) 649
SchI GAGTC 2 cut(s) 171, 454
ScrFI CCNGG 2 cut(s) 106, 324
SdaI CCTGCAGG 1 cut(s) 649
SduI GDGCHC 2 cut(s) 168, 273
SfaAI GCGATCGC 1 cut(s) 264
SfcI CTRYAG 3 cut(s) 570, 630, 645
Sfr274I CTCGAG 1 cut(s) 161
SfuI TTCGAA 1 cut(s) 512
SgfI GCGATCGC 1 cut(s) 264
SinI GGWCC 1 cut(s) 531
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 887
Sse8387I CCTGCAGG 1 cut(s) 649
Sse9I AATT 7 cut(s) 98, 345, 394, 445, 624, 747, 787
SsiI CCGC 4 cut(s) 126, 246, 593, 794
SspMI CTAG 4 cut(s) 528, 708, 852, 888
StyD4I CCNGG 2 cut(s) 104, 322
StyI CCWWGG 3 cut(s) 120, 144, 240
TaaI ACNGT 4 cut(s) 313, 340, 634, 923
TaiI ACGT 1 cut(s) 71
TaqI TCGA 3 cut(s) 162, 512, 636
TasI AATT 7 cut(s) 98, 345, 394, 445, 624, 747, 787
TauI GCSGC 2 cut(s) 248, 797
TfiI GAWTC 1 cut(s) 703
Tru1I TTAA 2 cut(s) 393, 557
Tru9I TTAA 2 cut(s) 393, 557
TscAI CASTG 5 cut(s) 64, 93, 343, 574, 919
TseI GCWGC 2 cut(s) 248, 806
TspDTI ATGAA 3 cut(s) 491, 690, 752
TspGWI ACGGA 2 cut(s) 212, 883
TspRI CASTG 5 cut(s) 64, 93, 343, 574, 919
VpaK11BI GGWCC 1 cut(s) 531
VspI ATTAAT 1 cut(s) 393
XagI CCTNNNNNAGG 2 cut(s) 612, 690
XapI RAATTY 2 cut(s) 445, 624
XceI RCATGY 2 cut(s) 426, 931
XhoI CTCGAG 1 cut(s) 161
XmiI GTMKAC 3 cut(s) 71, 419, 636
XmnI GAANNNNTTC 3 cut(s) 312, 624, 787
XspI CTAG 4 cut(s) 528, 708, 852, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.