Prupe.5G099900_v2.0.a1

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013886
Physical Location & Seq
Forward (+)
10801954 .. 10805239
3286 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G099900.1

Sequence Viewer

Length: 1182 bp
ATGGGCAGGAGAGGAGGAGCCAAGAGAACGGGAAATACAGCATACGGGTCTAACAACACCATATCATTGAGAGAAGAATTGACAGGCAAGAAGCAAACCAAGGGACCCGCCGTCAACGCCAAGTCTGCACTGAAGCTCGAGCACTTGCAGAGACTCGCTGTATGGGCTGGTGGGGAAGCTTCTGTTCCTTCTCTGGGTGCCTTCTTCGCGCACACGTTGGCCTCTGCTCAGGAGGCTCTGGGCGTACCTCCTGACCCATCTCTGTTTACTTGCCAGAGATGTGAAACAATTCTTCAGCCTGGCTTGAACTGCACTGTTCGAATTGAGAAAAATAGATCAAAGAAACGACGAAAAAGTAAGAAACCAACTAGTTTCTCTCAAAACAATGTAGTGTATACATGCCACTTTTGTTCACATCGGAATTTGAAGAGAGGGACTCCACATGGACATATGAAAGTGATATGCCCCACCAAGACCAAAACGACTTCAAAACTGAAACCTGCTAAATCCATTTCCCAGAAGTCTGTCAGTTCAAAGAAGAGCATTGTAGCTGAAGATGAGGTTAGGAAAGCAAATGAGATAGCTGCATCAGAAATAATTCAAGCGAATGAGATAGCTTCATCAGAAATAACAAGAGAGATTCAAGCAAATGAGATAGCTTCATCAGAAATAGCAAGAGAGATTCAAGGGAATGAGACAGCTTCAGAAATAGAGAATGAGACAGCTTCATCAGAAATAGCAAGAGAGATTCAAGTGAATGAGACAGCTTCATCAGAAATAGCAAGGGAATTTCAAGAGAATGAGACAGCTTCATTAGAAATAGCAAGAGAGAATTGTATTGTGGAAACTTGGGCAGATGAAGATGAGGTTACTATAGTGAATGAGATGGCTTCTTCAGCAATGGCCGGGGAGATTCCAATGGTGGACAGTCCTGAAACTCCAAAGGTGAGGACTGGACCTACTTTGTTACTTGGAGGGAAGAGGAGAAAGCGAAACAAATCGGTGTCCAAGAAACCAGCTGAACCTGAAAACAGTCCTAACCCGACAGATGCAGAAAACACTGGCAGCATGTCAAACAAACGGAGGAGAAAGAAGTGGACTAGTTTGAAGGAAATCGCTGAAAGCAGTGAGCACAAGAACATCCGAAACATTAGTGATTTGACAATCCCTTTCTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

394

Amino Acids

43.1

Weight (kDa)

9.25

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 395
AccII CGCG 1 cut(s) 209
AciI CCGC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 903
AcsI RAATTY 2 cut(s) 421, 788
AcuI CTGAAG 5 cut(s) 152, 278, 573, 687, 879
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 213
AhdI GACNNNNNGTC 1 cut(s) 110
AhlI ACTAGT 2 cut(s) 368, 1100
AjnI CCWGG 1 cut(s) 298
Alw21I GWGCWC 2 cut(s) 144, 1134
Alw26I GTCTC 5 cut(s) 145, 689, 713, 755, 797
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 2 cut(s) 219, 903
ApeKI GCWGC 2 cut(s) 584, 1065
ApoI RAATTY 2 cut(s) 421, 788
Asp700I GAANNNNTTC 2 cut(s) 288, 597
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 104, 956
AsuC2I CCSGG 1 cut(s) 907
AsuHPI GGTGA 1 cut(s) 958
AsuII TTCGAA 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 104, 956
BanI GGYRCC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 144, 1134
BbvI GCAGC 2 cut(s) 571, 1077
BccI CCATC 2 cut(s) 265, 880
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 1 cut(s) 907
BcoDI GTCTC 5 cut(s) 145, 689, 713, 755, 797
BcuI ACTAGT 2 cut(s) 368, 1100
BfaI CTAG 2 cut(s) 369, 1101
BfmI CTRYAG 1 cut(s) 873
BfuAI ACCTGC 1 cut(s) 508
BisI GCNGC 2 cut(s) 585, 1066
BlsI GCNGC 2 cut(s) 586, 1067
Bme1390I CCNGG 2 cut(s) 300, 907
Bme18I GGWCC 2 cut(s) 104, 956
BmeRI GACNNNNNGTC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 104, 956
BmiI GGNNCC 4 cut(s) 19, 105, 106, 199
BmrFI CCNGG 2 cut(s) 300, 907
BmsI GCATC 2 cut(s) 596, 1039
BplI GAGNNNNNCTC 2 cut(s) 421, 453
Bpu10I CCTNAGC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 319
BpuMI CCSGG 1 cut(s) 907
BsaJI CCNNGG 2 cut(s) 99, 906
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 958, 1066
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 99, 906
BseGI GGATG 1 cut(s) 1140
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 958, 1066
BseRI GAGGAG 4 cut(s) 27, 30, 997, 1099
BseXI GCAGC 2 cut(s) 571, 1077
BsgI GTGCAG 2 cut(s) 111, 295
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 2 cut(s) 221, 905
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 144, 1134
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 906
BslFI GGGAC 2 cut(s) 117, 448
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 5 cut(s) 145, 689, 713, 755, 797
BsmFI GGGAC 2 cut(s) 117, 448
BsnI GGCC 2 cut(s) 221, 905
BsoBI CYCGRG 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 144, 1134
Bsp143I GATC 1 cut(s) 335
BspACI CCGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 221, 905
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 4 cut(s) 19, 105, 106, 199
BspMI ACCTGC 1 cut(s) 508
BspQI GCTCTTC 1 cut(s) 533
BspT104I TTCGAA 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 2 cut(s) 958, 1066
BssECI CCNNGG 2 cut(s) 99, 906
BssMI GATC 1 cut(s) 335
BssNAI GTATAC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 99
Bst1107I GTATAC 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 316, 929, 1034
Bst6I CTCTTC 3 cut(s) 422, 533, 974
BstBI TTCGAA 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 1140
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 1 cut(s) 338
BstMAI GTCTC 5 cut(s) 145, 689, 713, 755, 797
BstMBI GATC 1 cut(s) 335
BstMWI GCNNNNNNNGC 7 cut(s) 116, 125, 164, 206, 233, 309, 896
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 2 cut(s) 402, 1072
BstSCI CCNGG 2 cut(s) 298, 905
BstSFI CTRYAG 1 cut(s) 873
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 571, 1077
BstZ17I GTATAC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 221, 905
BtsCI GGATG 1 cut(s) 1140
BtsI GCAGTG 1 cut(s) 1132
BtsIMutI CAGTG 4 cut(s) 128, 312, 1059, 1132
BveI ACCTGC 1 cut(s) 508
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 104, 956
Csp6I GTAC 1 cut(s) 245
CviAII CATG 3 cut(s) 399, 443, 1069
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
DriI GACNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 903
Eam1104I CTCTTC 3 cut(s) 422, 533, 974
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 3 cut(s) 422, 533, 974
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 104, 956
Eco57I CTGAAG 5 cut(s) 152, 278, 573, 687, 879
Eco88I CYCGRG 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 3 cut(s) 402, 446, 1072
FaqI GGGAC 2 cut(s) 117, 448
FatI CATG 3 cut(s) 398, 442, 1068
FauI CCCGC 1 cut(s) 115
FauNDI CATATG 1 cut(s) 450
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 2 cut(s) 585, 1066
FokI GGATG 1 cut(s) 1127
Fsp4HI GCNGC 2 cut(s) 585, 1066
FspBI CTAG 2 cut(s) 369, 1101
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 585, 1066
HaeIII GGCC 2 cut(s) 221, 905
HapII CCGG 1 cut(s) 906
HhaI GCGC 1 cut(s) 211
Hin1II CATG 3 cut(s) 402, 446, 1072
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 6 cut(s) 153, 436, 640, 682, 748, 913
HpaII CCGG 1 cut(s) 906
HphI GGTGA 1 cut(s) 958
Hpy166II GTNNAC 6 cut(s) 115, 267, 396, 413, 925, 1098
Hpy188I TCNGA 8 cut(s) 420, 592, 625, 667, 706, 733, 775, 1145
Hpy188III TCNNGA 4 cut(s) 230, 251, 794, 932
Hpy8I GTNNAC 6 cut(s) 115, 267, 396, 413, 925, 1098
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 3 cut(s) 198, 211, 1102
HpyCH4III ACNGT 3 cut(s) 316, 929, 1034
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 5 cut(s) 128, 148, 312, 587, 1052
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 125, 164, 206, 233, 309, 896
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 3 cut(s) 402, 446, 1072
HspAI GCGC 1 cut(s) 209
KflI GGGWCCC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 335
LguI GCTCTTC 1 cut(s) 533
LmnI GCTCC 1 cut(s) 17
Lsp1109I GCAGC 2 cut(s) 571, 1077
LweI GCATC 2 cut(s) 596, 1039
MaeI CTAG 2 cut(s) 369, 1101
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 868, 966
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 9 cut(s) 86, 196, 284, 439, 550, 566, 872, 885, 991
MhlI GDGCHC 2 cut(s) 144, 1134
MluCI AATT 7 cut(s) 77, 288, 321, 421, 597, 788, 832
MlyI GAGTC 2 cut(s) 147, 430
MroXI GAANNNNTTC 2 cut(s) 288, 597
MspA1I CMGCKG 1 cut(s) 1019
MspI CCGG 1 cut(s) 906
MspR9I CCNGG 2 cut(s) 300, 907
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 7 cut(s) 116, 125, 164, 206, 233, 309, 896
NciI CCSGG 1 cut(s) 907
NdeI CATATG 1 cut(s) 450
NdeII GATC 1 cut(s) 335
NlaIII CATG 3 cut(s) 402, 446, 1072
NlaIV GGNNCC 4 cut(s) 19, 105, 106, 199
NspI RCATGY 2 cut(s) 402, 1072
NspV TTCGAA 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 533
PdmI GAANNNNTTC 2 cut(s) 288, 597
PfeI GAWTC 4 cut(s) 640, 682, 748, 913
PkrI GCNGC 2 cut(s) 586, 1067
PleI GAGTC 2 cut(s) 147, 430
PpsI GAGTC 2 cut(s) 147, 430
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 4 cut(s) 19, 105, 106, 199
PspPI GGNCC 2 cut(s) 104, 956
PspPPI RGGWCCY 1 cut(s) 104
PspXI VCTCGAGB 1 cut(s) 137
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 533
SatI GCNGC 2 cut(s) 585, 1066
Sau3AI GATC 1 cut(s) 335
Sau96I GGNCC 2 cut(s) 104, 956
SchI GAGTC 2 cut(s) 147, 430
ScrFI CCNGG 2 cut(s) 300, 907
SduI GDGCHC 2 cut(s) 144, 1134
SfaNI GCATC 2 cut(s) 596, 1039
SfcI CTRYAG 1 cut(s) 873
Sfr274I CTCGAG 1 cut(s) 137
SfuI TTCGAA 1 cut(s) 319
SinI GGWCC 2 cut(s) 104, 956
SlaI CTCGAG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 2 cut(s) 368, 1100
Sse9I AATT 7 cut(s) 77, 288, 321, 421, 597, 788, 832
SsiI CCGC 1 cut(s) 108
SspMI CTAG 2 cut(s) 369, 1101
StyD4I CCNGG 2 cut(s) 298, 905
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 316, 929, 1034
TaiI ACGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 138, 319
TasI AATT 7 cut(s) 77, 288, 321, 421, 597, 788, 832
TfiI GAWTC 4 cut(s) 640, 682, 748, 913
TscAI CASTG 4 cut(s) 135, 319, 1066, 1132
TseI GCWGC 2 cut(s) 584, 1065
TspDTI ATGAA 7 cut(s) 467, 609, 651, 717, 759, 801, 873
TspGWI ACGGA 1 cut(s) 1096
TspRI CASTG 4 cut(s) 135, 319, 1066, 1132
VpaK11BI GGWCC 2 cut(s) 104, 956
XapI RAATTY 2 cut(s) 421, 788
XceI RCATGY 2 cut(s) 402, 1072
XhoI CTCGAG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 395
XmnI GAANNNNTTC 2 cut(s) 288, 597
XspI CTAG 2 cut(s) 369, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.