Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007737

Physical Location & Seq

Genomic Coordinates Reverse (-)

16756698 .. 16758220

Gene Structure 1523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTTCACGGAGGAAAAGAAGAAAGGTGAATGAAGAATCAGAGATTCCATGTTCGCCGGTCGTTATATTCGCGCACGGTGCCGGTGCTCCCTCTTCTTCCGACTGGATGATTAGATGGAAGGAAATGTTAAAGAAGACATTAGAAGCTGTTGAAGTGGTCACATTTGACTATCCTTATCTTGCTGACGGGAAAAAAAGAGTAGCTCCGAAAGCGGAGAAATTGATAGAGTTTCATTTGAATGTTGTTAAAGAAACTGCTGCTAAATTCCCTGGTCATCCTTTGATATTAGTTGGCAAATCAATGGGTTCTAGAGTAAGCTGTATGGTTTCAGCTGTGAATGAAGATGTTACAGTTTCAGCTGTGATATGTTTAGGATATCCACTTAAGGGCGCGAAAGGTGCGATAAGAGACGAGACTCTACTGGAAATGGGAGTCCCTGTGATGTTTGTGCAGGGAAGCAAAGATCCGATGTGTCCTCTGAATAAGCTTGAAGCTGTTTGTAATAAAATGAAAGCTGTGACTGAGGTTCATGTGATTGATGGTGGAGATCACTCCTTCAAGATTGGGAAGAAACACCTTGAAACAAAGGAGTTAACACAAGAGGAAGTCGAAGATGTCGCTATGAAAGCAATAGCCGCTTTTGTCTCCAAATCTCTTGCTCAAAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_5 Abhydrolase_6 DLH

Protein Analysis

224

Amino Acids

24.5

Weight (kDa)

8.71

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	20 - 126	5.5e-06	alpha/beta hydrolase fold
Abhydrolase_11	PF20408	21 - 216	7.7e-42	Alpha/beta hydrolase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41850
fragaria_vesca	FvH4_5g04410 FvH4_5g04410 FvH4_5g04410
malus_domestica	MD06G1104500.v1.1 MD06G1104600.v1.1 MD14G1123300.v1.1
prunus_persica	Prupe.5G117200_v2.0.a1 Prupe.5G117200_v2.0.a1 Prupe.5G117200_v2.0.a1
pyrus_communis	pycom06g09910
rosa_chinensis	RchiOBHm_Chr7g0195141 RchiOBHm_Chr7g0195151
rosa_laevigata	RLG00000004143 RLG00000004144
rosa_multiflora	Rmu_sc0002381.1_g000025
rosa_roxburghii	Rroxscaffold_3G00260750
rosa_rugosa	Rorug07G0021000
rosa_samantha	Rh7AG148400 Rh7BG149300 Rh7BG149500 Rh7CG152900 Rh7DG149600
rosa_wichuraiana	Rw7G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccII	CGCG	2 cut(s)	74, 395
AciI	CCGC	2 cut(s)	215, 639
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	5 cut(s)	155, 241, 494, 562, 584
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	9 cut(s)	149, 206, 321, 335, 362, 490, 497, 518, 669
AluI	AGCT	9 cut(s)	149, 206, 321, 335, 362, 490, 497, 518, 669
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	3 cut(s)	405, 410, 652
AlwI	GGATC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	76, 395
AsuHPI	GGTGA	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	111, 536
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	3 cut(s)	405, 410, 652
BfaI	CTAG	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	2 cut(s)	261, 639
BlsI	GCNGC	2 cut(s)	262, 640
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	2 cut(s)	58, 83
Bse1I	ACTGG	2 cut(s)	110, 429
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	114, 277
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	110, 429
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	2 cut(s)	74, 395
Bsh1285I	CGRYCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	59, 84
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	405, 410, 652
BsmBI	CGTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	466, 550
BspACI	CCGC	2 cut(s)	215, 639
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	2 cut(s)	74, 395
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	386
BsrFI	RCCGGY	2 cut(s)	58, 83
BsrI	ACTGG	2 cut(s)	110, 429
BssAI	RCCGGY	2 cut(s)	58, 83
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	466, 550
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	80, 355
Bst6I	CTCTTC	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	114, 277
BstFNI	CGCG	2 cut(s)	74, 395
BstHHI	GCGC	2 cut(s)	76, 395
BstKTI	GATC	2 cut(s)	469, 553
BstMAI	GTCTC	3 cut(s)	405, 410, 652
BstMBI	GATC	2 cut(s)	466, 550
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 212, 401, 629, 638
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	2 cut(s)	74, 395
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	114, 277
CfoI	GCGC	2 cut(s)	76, 395
Cfr10I	RCCGGY	2 cut(s)	58, 83
CviAII	CATG	2 cut(s)	51, 533
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	2 cut(s)	468, 552
DpnII	GATC	2 cut(s)	466, 550
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	2 cut(s)	54, 536
FaiI	YATR	7 cut(s)	52, 68, 326, 370, 534, 626, 673
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	50, 532
Fnu4HI	GCNGC	2 cut(s)	261, 639
FokI	GGATG	2 cut(s)	121, 264
Fsp4HI	GCNGC	2 cut(s)	261, 639
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	2 cut(s)	75, 394
GluI	GCNGC	2 cut(s)	261, 639
HapII	CCGG	2 cut(s)	59, 84
HhaI	GCGC	2 cut(s)	76, 395
Hin1II	CATG	2 cut(s)	54, 536
Hin6I	GCGC	2 cut(s)	74, 393
HinP1I	GCGC	2 cut(s)	74, 393
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	38, 46, 418, 435
HpaI	GTTAAC	1 cut(s)	597
HpaII	CCGG	2 cut(s)	59, 84
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	5 cut(s)	43, 103, 210, 471, 483
Hpy188III	TCNNGA	2 cut(s)	312, 562
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	2 cut(s)	115, 568
HpyCH4III	ACNGT	2 cut(s)	80, 355
HpyCH4V	TGCA	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 212, 401, 629, 638
HpyF3I	CTNAG	1 cut(s)	525
Hsp92II	CATG	2 cut(s)	54, 536
HspAI	GCGC	2 cut(s)	74, 393
KspAI	GTTAAC	1 cut(s)	597
Kzo9I	GATC	2 cut(s)	466, 550
LmnI	GCTCC	2 cut(s)	94, 211
LpnPI	CCDG	8 cut(s)	72, 91, 97, 258, 285, 410, 440, 453
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	160, 349, 520
MalI	GATC	2 cut(s)	468, 552
MboI	GATC	2 cut(s)	466, 550
MboII	GAAGA	8 cut(s)	33, 47, 87, 90, 148, 356, 583, 626
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	2 cut(s)	221, 266
MlyI	GAGTC	2 cut(s)	412, 444
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	6, 103, 489, 520, 598
MseI	TTAA	4 cut(s)	131, 249, 387, 596
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	335, 362
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	2 cut(s)	59, 84
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	2 cut(s)	74, 395
MwoI	GCNNNNNNNGC	5 cut(s)	80, 212, 401, 629, 638
NdeII	GATC	2 cut(s)	466, 550
NlaIII	CATG	2 cut(s)	54, 536
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	160, 520
PfeI	GAWTC	2 cut(s)	38, 46
PkrI	GCNGC	2 cut(s)	262, 640
PleI	GAGTC	2 cut(s)	412, 443
PpsI	GAGTC	2 cut(s)	412, 443
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	2 cut(s)	335, 362
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	131, 249, 387, 596
SatI	GCNGC	2 cut(s)	261, 639
Sau3AI	GATC	2 cut(s)	466, 550
SchI	GAGTC	2 cut(s)	412, 444
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	221, 266
SsiI	CCGC	2 cut(s)	215, 639
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	80, 355
TaqI	TCGA	1 cut(s)	612
TasI	AATT	2 cut(s)	221, 266
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	2 cut(s)	38, 46
Tru1I	TTAA	4 cut(s)	131, 249, 387, 596
Tru9I	TTAA	4 cut(s)	131, 249, 387, 596
TseFI	GTSAC	2 cut(s)	160, 520
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	2 cut(s)	160, 520
TspDTI	ATGAA	6 cut(s)	48, 224, 357, 521, 527, 641
TspGWI	ACGGA	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	266
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.