Rroxscaffold_3G00260750

KAT8 regulatory NSL complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007737
Physical Location & Seq
Reverse (-)
55074420 .. 55077312
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260750.1

Sequence Viewer

Length: 777 bp
ATGGACACAAACCCTCCCTTTGTGAAGAAAGTTTTGATGGATGATATCGATGGCCTGGGTTTTACTTGCCTAGGGATGGATTCACCACCAAGTCCAAAACGCAGGCGTAAGGATGACGATACAAATGAAACGGCAGCAACATCGCCGGAGAAATCATCCCCTGTGGTGGTCTTTGCTCATGGCGCTGGTGCTCCCTCTTCTTCTGATTGGATGATCAGATGGAAGGGTATGTTGGGCAAAGCACTAAATGCTGTAGAAGTTGTTACCTTTGATTACCCATACATGTCTGGTGGGAAAAAGAGAGCCCCTCCGAAGGCTGAAAAGTTGGTCGATTTTCACGCTGATTTTGTGAAGAAAACTGTTGAAAAGTACCCAGGTCATCCATTGATTTTGGCCGGAAAATCTATGGGTTCAAGAGTCAGCTGCATGGTAGCTTGCAAGGAAGATATTGATGCTTCAACAATCGTTTGCTTAGGATACCCACTAAAGGGCATTAATGGGGCACTGCGAGATGAAACTCTGTTGCAACTTTCAACTCCCATAATGTTTGTACAGGGTAGTAAAGATGCACTCTGTCCATTGGAAAAGCTAGAAGTTACCCGCAAGAAGATGAAATGTCTTAGTGATTTGCATGTGATTGACGGTGGTGACCACTCCTTCAAGATTGGAAAGAAGCAACTGCAAACCACTGGGTTAACGCAAGACCAAGCTGAAGATCTTGCAGTTGAGGCAATTGCAACCTTTCTGTCAAGTTTCTTGGAGAAAGGTGACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_5 Abhydrolase_6 DLH

Protein Analysis

258

Amino Acids

28.03

Weight (kDa)

6.95

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_11 PF20408 54 - 249 5.4e-42 Alpha/beta hydrolase domain
Abhydrolase_1 PF00561 54 - 158 5.7e-08 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 56 - 161 1.6e-07 Alpha/beta hydrolase family
Abhydrolase_5 PF12695 113 - 219 6.2e-07 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 601
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 2 cut(s) 371, 552
AfiI CCNNNNNNNGG 5 cut(s) 76, 166, 313, 487, 488
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 5 cut(s) 365, 414, 459, 534, 661
AjnI CCWGG 2 cut(s) 54, 373
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 4 cut(s) 423, 434, 589, 710
AluI AGCT 4 cut(s) 423, 434, 589, 710
Alw21I GWGCWC 1 cut(s) 193
AoxI GGCC 2 cut(s) 52, 393
ApeKI GCWGC 2 cut(s) 134, 423
AseI ATTAAT 1 cut(s) 495
AspA2I CCTAGG 1 cut(s) 70
AspLEI GCGC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 75, 659
AvrII CCTAGG 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 146, 410
BccI CCATC 4 cut(s) 31, 44, 70, 213
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 2 cut(s) 56, 375
BciVI GTATCC 1 cut(s) 470
BclI TGATCA 1 cut(s) 213
BfaI CTAG 2 cut(s) 71, 590
BfmI CTRYAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 186
BfuI GTATCC 1 cut(s) 470
BglII AGATCT 1 cut(s) 715
BisI GCNGC 2 cut(s) 135, 424
BlnI CCTAGG 1 cut(s) 70
BlsI GCNGC 2 cut(s) 136, 425
Bme1390I CCNGG 2 cut(s) 56, 375
BmrFI CCNGG 2 cut(s) 56, 375
BmrI ACTGGG 1 cut(s) 699
BmsI GCATC 2 cut(s) 442, 556
BmuI ACTGGG 1 cut(s) 699
BplI GAGNNNNNCTC 2 cut(s) 292, 324
Bpu10I CCTNAGC 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 55, 70, 373
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 166, 313, 487, 488
Bse1I ACTGG 1 cut(s) 694
BseBI CCWGG 2 cut(s) 56, 375
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 55, 70, 373
BseGI GGATG 6 cut(s) 46, 81, 118, 155, 216, 379
BseLI CCNNNNNNNGG 5 cut(s) 76, 166, 313, 487, 488
BseNI ACTGG 1 cut(s) 694
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 2 cut(s) 146, 410
BshFI GGCC 2 cut(s) 54, 395
BshVI ATCGAT 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 146, 396
BslI CCNNNNNNNGG 5 cut(s) 76, 166, 313, 487, 488
BsnI GGCC 2 cut(s) 54, 395
Bsp1286I GDGCHC 3 cut(s) 193, 307, 505
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 2 cut(s) 213, 715
BspACI CCGC 1 cut(s) 601
BspANI GGCC 2 cut(s) 54, 395
BspDI ATCGAT 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 550
BsrI ACTGG 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 55, 70, 373
BssMI GATC 2 cut(s) 213, 715
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 2 cut(s) 56, 375
Bst4CI ACNGT 2 cut(s) 361, 644
Bst6I CTCTTC 1 cut(s) 202
BstAPI GCANNNNNTGC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 104, 436
BstDEI CTNAG 2 cut(s) 472, 620
BstEII GGTNACC 1 cut(s) 647
BstF5I GGATG 6 cut(s) 46, 81, 118, 155, 216, 379
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 2 cut(s) 216, 718
BstMBI GATC 2 cut(s) 213, 715
BstMWI GCNNNNNNNGC 3 cut(s) 182, 248, 728
BstNI CCWGG 2 cut(s) 56, 375
BstNSI RCATGY 2 cut(s) 286, 635
BstPI GGTNACC 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 54, 373
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 146, 410
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
Bsu15I ATCGAT 1 cut(s) 48
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 2 cut(s) 54, 395
BsuTUI ATCGAT 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 6 cut(s) 46, 81, 118, 155, 216, 379
BtsI GCAGTG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 503, 687
Cac8I GCNNGC 2 cut(s) 104, 436
CfoI GCGC 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 2 cut(s) 370, 551
CviAII CATG 4 cut(s) 179, 283, 427, 632
CviJI RGCY 8 cut(s) 54, 305, 317, 395, 423, 434, 589, 710
CviKI_1 RGCY 8 cut(s) 54, 305, 317, 395, 423, 434, 589, 710
CviQI GTAC 2 cut(s) 370, 551
DdeI CTNAG 2 cut(s) 472, 620
DpnI GATC 2 cut(s) 215, 717
DpnII GATC 2 cut(s) 213, 715
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 307
Eco32I GATATC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 732
Eco91I GGTNACC 1 cut(s) 647
EcoO65I GGTNACC 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 54, 373
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 182, 286, 430, 635
FaiI YATR 8 cut(s) 180, 230, 280, 284, 407, 428, 542, 633
FatI CATG 4 cut(s) 178, 282, 426, 631
FauI CCCGC 1 cut(s) 608
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 135, 424
FokI GGATG 6 cut(s) 53, 88, 125, 142, 223, 366
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 135, 424
FspBI CTAG 2 cut(s) 71, 590
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 135, 424
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 54, 395
HapII CCGG 2 cut(s) 146, 396
HhaI GCGC 1 cut(s) 185
Hin1II CATG 4 cut(s) 182, 286, 430, 635
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HinfI GANTC 2 cut(s) 80, 417
HpaI GTTAAC 1 cut(s) 696
HpaII CCGG 2 cut(s) 146, 396
HphI GGTGA 2 cut(s) 75, 659
Hpy166II GTNNAC 1 cut(s) 696
Hpy188I TCNGA 3 cut(s) 205, 218, 312
Hpy188III TCNNGA 2 cut(s) 414, 661
Hpy8I GTNNAC 1 cut(s) 696
HpyAV CCTTC 3 cut(s) 217, 307, 667
HpyCH4III ACNGT 2 cut(s) 361, 644
HpyCH4V TGCA 8 cut(s) 426, 438, 526, 569, 631, 682, 722, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 248, 728
HpyF3I CTNAG 2 cut(s) 472, 620
Hsp92II CATG 4 cut(s) 182, 286, 430, 635
HspAI GCGC 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 213
KspAI GTTAAC 1 cut(s) 696
Kzo9I GATC 2 cut(s) 213, 715
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 146, 410
LweI GCATC 2 cut(s) 442, 556
MaeI CTAG 2 cut(s) 71, 590
MaeIII GTNAC 4 cut(s) 262, 595, 647, 767
MalI GATC 2 cut(s) 215, 717
MboI GATC 2 cut(s) 213, 715
MboII GAAGA 7 cut(s) 37, 189, 192, 364, 455, 619, 725
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 1 cut(s) 715
MhlI GDGCHC 3 cut(s) 193, 307, 505
MluCI AATT 1 cut(s) 732
MlyI GAGTC 1 cut(s) 426
MnlI CCTC 4 cut(s) 24, 205, 318, 721
MseI TTAA 3 cut(s) 495, 695, 775
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 2 cut(s) 146, 396
MspR9I CCNGG 2 cut(s) 56, 375
MunI CAATTG 1 cut(s) 732
MvaI CCWGG 2 cut(s) 56, 375
MwoI GCNNNNNNNGC 3 cut(s) 182, 248, 728
NdeII GATC 2 cut(s) 213, 715
NlaIII CATG 4 cut(s) 182, 286, 430, 635
NmuCI GTSAC 2 cut(s) 647, 767
NspI RCATGY 2 cut(s) 286, 635
PciI ACATGT 1 cut(s) 282
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 136, 425
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PscI ACATGT 1 cut(s) 282
PshBI ATTAAT 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 54, 373
PspEI GGTNACC 1 cut(s) 647
PspGI CCWGG 2 cut(s) 54, 373
PsuI RGATCY 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 423
RsaI GTAC 2 cut(s) 371, 552
RsaNI GTAC 2 cut(s) 370, 551
SaqAI TTAA 3 cut(s) 495, 695, 775
SatI GCNGC 2 cut(s) 135, 424
Sau3AI GATC 2 cut(s) 213, 715
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 2 cut(s) 56, 375
SduI GDGCHC 3 cut(s) 193, 307, 505
SetI ASST 8 cut(s) 269, 379, 425, 436, 591, 712, 743, 769
SfaNI GCATC 2 cut(s) 442, 556
SfcI CTRYAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 732
SsiI CCGC 1 cut(s) 601
SspMI CTAG 2 cut(s) 71, 590
StyD4I CCNGG 2 cut(s) 54, 373
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 361, 644
TaqI TCGA 2 cut(s) 48, 330
TasI AATT 1 cut(s) 732
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 3 cut(s) 495, 695, 775
Tru9I TTAA 3 cut(s) 495, 695, 775
TscAI CASTG 2 cut(s) 510, 694
TseFI GTSAC 2 cut(s) 647, 767
TseI GCWGC 2 cut(s) 134, 423
Tsp45I GTSAC 2 cut(s) 647, 767
TspDTI ATGAA 3 cut(s) 141, 528, 626
TspRI CASTG 2 cut(s) 510, 694
VspI ATTAAT 1 cut(s) 495
XceI RCATGY 2 cut(s) 286, 635
XmaJI CCTAGG 1 cut(s) 70
XspI CTAG 2 cut(s) 71, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.