RLG00000004143

KAT8 regulatory NSL complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007737
Physical Location & Seq
Reverse (-)
56542860 .. 56544878
2019 bp
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UTR
Exon/CDS
Intron
RLM00000004143

Sequence Viewer

Length: 648 bp
ATGGCTTCAACACCAAGTTCAAAACGCAGGCGTAAGGACGACGATGCAAATGAAACGGCAGCAACATCGCCGGAGAAATCATCCCCTGTGGTGGTCTTTGCTCATGGCGCCGGTGCTCCCTCTTCTTCTGATTGGATGATCAGGTGGAAGGATATGTTGGGAAAATCACTAAATGCTGTTGAAGTTGTTGCCTTTGATTACCCATACATGTCTGGTGGGAAAAAGAGAGCCCCTCCGAAGGCTGAAAAGTTGGTCGATTTTCACGCTGATTTTGTGAAGAAAACTGTTGAAAAAGTCAGCTGCATGGTAGCTTGCAAGGAAGATATTGATGCTTCAACAATCGTTTGCTTAGGATACCCACTAAAGGGCATTAATGGGGCACTGCGAGATGAAACTCTGTTGCAACTTTCAATTCCCATAATGTTTGTACAGAGTAGTCAAGATGCACTTTGTCCGTTGGAAAAGCTAGAAGTTACTCGCAAAAAGATAAAATGTCTTAGTGGTTTGCATGTGATTGATGGTGGCGACCACTCCTTCAAGATTGGAAAGAAGCAACTGCAAACCACTGGGTTAATGCAAGACCAAGCTGAAGATCTTGCAGTTGAGGCAATTGCAGCCTTTCTGTCAAGTTTTCTTGGAGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_5 Abhydrolase_6 DLH

Protein Analysis

216

Amino Acids

23.39

Weight (kDa)

7.62

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_11 PF20408 29 - 207 3e-26 Alpha/beta hydrolase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 4 cut(s) 91, 238, 364, 365
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 7 cut(s) 9, 21, 182, 290, 336, 411, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 300, 311, 466, 587
AluI AGCT 4 cut(s) 300, 311, 466, 587
Alw21I GWGCWC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 59, 300, 614
AseI ATTAAT 1 cut(s) 372
AspLEI GCGC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 71, 287, 626
BccI CCATC 1 cut(s) 512
BceAI ACGGC 1 cut(s) 72
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 1 cut(s) 138
BfaI CTAG 1 cut(s) 467
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 347
BglII AGATCT 1 cut(s) 592
BisI GCNGC 3 cut(s) 60, 301, 615
BlsI GCNGC 3 cut(s) 61, 302, 616
BmiI GGNNCC 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 3 cut(s) 34, 319, 433
BmuI ACTGGG 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 217, 249
Bpu10I CCTNAGC 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 238, 364, 365
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 571
BseGI GGATG 2 cut(s) 80, 141
BseLI CCNNNNNNNGG 4 cut(s) 91, 238, 364, 365
BseNI ACTGG 1 cut(s) 571
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 3 cut(s) 71, 287, 626
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 2 cut(s) 71, 111
BslI CCNNNNNNNGG 4 cut(s) 91, 238, 364, 365
Bsp1286I GDGCHC 3 cut(s) 118, 232, 382
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 2 cut(s) 138, 592
BspLI GGNNCC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 1 cut(s) 571
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 2 cut(s) 138, 592
BssNI GRCGYC 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 29, 313
BstDEI CTNAG 2 cut(s) 349, 497
BstF5I GGATG 2 cut(s) 80, 141
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 141, 595
BstMBI GATC 2 cut(s) 138, 592
BstMWI GCNNNNNNNGC 3 cut(s) 107, 605, 614
BstNSI RCATGY 2 cut(s) 211, 512
BstSLI GKGCMC 1 cut(s) 382
BstV1I GCAGC 3 cut(s) 71, 287, 626
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BsuI GTATCC 1 cut(s) 347
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 80, 141
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 2 cut(s) 380, 564
Cac8I GCNNGC 2 cut(s) 29, 313
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 110
Csp6I GTAC 1 cut(s) 428
CviAII CATG 4 cut(s) 104, 208, 304, 509
CviJI RGCY 8 cut(s) 5, 230, 242, 300, 311, 466, 587, 617
CviKI_1 RGCY 8 cut(s) 5, 230, 242, 300, 311, 466, 587, 617
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 2 cut(s) 349, 497
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 140, 594
DpnII GATC 2 cut(s) 138, 592
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 232
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
FaeI CATG 4 cut(s) 107, 211, 307, 512
FaiI YATR 7 cut(s) 105, 155, 205, 209, 305, 419, 510
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FatI CATG 4 cut(s) 103, 207, 303, 508
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 60, 301, 615
FokI GGATG 2 cut(s) 67, 148
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 60, 301, 615
FspBI CTAG 1 cut(s) 467
GlaI GCGC 1 cut(s) 109
GluI GCNGC 3 cut(s) 60, 301, 615
HaeII RGCGCY 1 cut(s) 111
HapII CCGG 2 cut(s) 71, 111
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 4 cut(s) 107, 211, 307, 512
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HpaII CCGG 2 cut(s) 71, 111
Hpy188I TCNGA 2 cut(s) 130, 237
Hpy188III TCNNGA 2 cut(s) 440, 538
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 142, 232, 544
HpyCH4III ACNGT 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 605, 614
HpyF3I CTNAG 2 cut(s) 349, 497
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 107, 211, 307, 512
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 592
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 7 cut(s) 13, 84, 99, 124, 127, 198, 552
Lsp1109I GCAGC 3 cut(s) 71, 287, 626
LweI GCATC 3 cut(s) 34, 319, 433
MaeI CTAG 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 472
MalI GATC 2 cut(s) 140, 594
MboI GATC 2 cut(s) 138, 592
MboII GAAGA 5 cut(s) 114, 117, 289, 332, 602
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 3 cut(s) 118, 232, 382
MluCI AATT 2 cut(s) 411, 609
Mly113I GGCGCC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 3 cut(s) 130, 243, 598
MseI TTAA 2 cut(s) 372, 572
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 2 cut(s) 71, 111
MunI CAATTG 1 cut(s) 609
MwoI GCNNNNNNNGC 3 cut(s) 107, 605, 614
NarI GGCGCC 1 cut(s) 108
NdeII GATC 2 cut(s) 138, 592
NlaIII CATG 4 cut(s) 107, 211, 307, 512
NlaIV GGNNCC 1 cut(s) 109
NspI RCATGY 2 cut(s) 211, 512
PciI ACATGT 1 cut(s) 207
PkrI GCNGC 3 cut(s) 61, 302, 616
PluTI GGCGCC 1 cut(s) 111
PscI ACATGT 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 372, 572
SatI GCNGC 3 cut(s) 60, 301, 615
Sau3AI GATC 2 cut(s) 138, 592
SduI GDGCHC 3 cut(s) 118, 232, 382
SetI ASST 6 cut(s) 146, 302, 313, 468, 589, 647
SfaNI GCATC 3 cut(s) 34, 319, 433
SfoI GGCGCC 1 cut(s) 109
SgrAI CRCCGGYG 1 cut(s) 110
Sse9I AATT 2 cut(s) 411, 609
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 467
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 411, 609
TatI WGTACW 1 cut(s) 427
Tru1I TTAA 2 cut(s) 372, 572
Tru9I TTAA 2 cut(s) 372, 572
TscAI CASTG 2 cut(s) 387, 571
TseI GCWGC 3 cut(s) 59, 300, 614
TspDTI ATGAA 2 cut(s) 66, 405
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 2 cut(s) 387, 571
VspI ATTAAT 1 cut(s) 372
XceI RCATGY 2 cut(s) 211, 512
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.