Rorug07G0021000

KAT8 regulatory NSL complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000232
Physical Location & Seq
Reverse (-)
1546915 .. 1550274
3360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0021000.1

Sequence Viewer

Length: 999 bp
ATGAGTGAAGCTATCCAAAAATCGAAGCCAAAGCGCGAGAGCGATTCCGGGGATTCAAGCTCAGTTGCGAAGAAGCTGAAAATCGATCAAAGCCAAATCCCAGAAGTTGATTCGAGTGGAAGTGAGGCAAATCCAGATGCGAGGGAAATGGGTTTTGAAATCGAAGCTGAGGTAGCAGAGGATAAGGGGTTAAGGCACGCCATGGAGGACGCGTGGGTTCTGCTCTTGGATGCGAGCTTGGGTTTTCAGGGAAACTTGAGGTGTGCACATTTTGCGATTTATGATGGGCATGGAGGTCGATTGGCTGCAGAGTATGCTCAGAAGCATTTGCATTCGAATGTGCTTTCGGCTGGGTTACCACGTGAGTTGTTGAATGTGAAAGCAGCTAAGAAAGCCATTCTTGATGGTTTTCGGAAAACTGATGAGGCTATTCTTCAAGAAAGTGCTGCAGGGGGATGGCAAGACGGTGCTACAGCTGTATGTGTTTGGATATTAGGAAAAACAGTATTTGTTGCTAATATTGGGGATGCAAAAGCTGTGGTAGCAAGATCATCTCCTGTTGATGGATTGCAAAATGGTTCTGATGAAGCACGTCTTTTGAAGGCCATTGTTTTAACAAGAGAACACAAAGCCATCTATGCACAGGAGCGTGCTCGTATTCAGAAGGCTGGTGGTAGTGTGAGTTCAAATGGACGACTGCAGGGTCGCCTTGAAGTTTCTAGGGCCTTTGGAGATCGCCAGTTCAAAAAGTTTGGTGTTGTTGCTACCCCAGATATTCATTCATTTGACCTTACAGAAAGAGAGCACTTCATAATTCTTGGTTGCGACGGCCTCTGGGGGGTAATTGGACCAAGTGATGCTGTTGATTTTGTTCAGAAACAGTTGAAGGAGGGACTACCTGTTACGGCTATTAGCCGCTCTCTAGTAAGGGAAGCTGTGCGTGAGCGGCGCTGTAAAGATAACTGCACGGCAATCATAATCCTATTCAGGCACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_5 Abhydrolase_6 DLH

Protein Analysis

332

Amino Acids

36.11

Weight (kDa)

7.69

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 60 - 320 3.5e-55 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55700 AT3G55710
fragaria_vesca FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 702
AccBSI CCGCTC 2 cut(s) 918, 946
AccII CGCG 2 cut(s) 36, 212
AciI CCGC 2 cut(s) 916, 946
AcvI CACGTG 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 563, 838
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 9 cut(s) 57, 158, 373, 437, 601, 687, 713, 745, 886
AjiI CACGTC 1 cut(s) 593
AluBI AGCT 9 cut(s) 11, 60, 76, 167, 237, 386, 476, 536, 935
AluI AGCT 9 cut(s) 11, 60, 76, 167, 237, 386, 476, 536, 935
Alw21I GWGCWC 3 cut(s) 268, 655, 807
Alw44I GTGCAC 1 cut(s) 264
AoxI GGCC 3 cut(s) 603, 723, 829
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 3 cut(s) 305, 383, 446
AspLEI GCGC 2 cut(s) 36, 951
AspS9I GGNCC 2 cut(s) 723, 848
AsuC2I CCSGG 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 335
AvaII GGWCC 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 268
BbrPI CACGTG 1 cut(s) 362
Bbv12I GWGCWC 3 cut(s) 268, 655, 807
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 292, 395, 433
BccI CCATC 5 cut(s) 278, 398, 450, 557, 641
BceAI ACGGC 3 cut(s) 844, 921, 984
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 2 cut(s) 720, 923
BfmI CTRYAG 4 cut(s) 306, 447, 471, 698
BfoI RGCGCY 1 cut(s) 952
BisI GCNGC 5 cut(s) 306, 384, 447, 916, 947
BlsI GCNGC 5 cut(s) 307, 385, 448, 917, 948
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 848
BmgBI CACGTC 1 cut(s) 593
BmgT120I GGNCC 2 cut(s) 723, 848
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 4 cut(s) 127, 220, 517, 847
Bpu10I CCTNAGC 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 48, 201
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 563, 838
Bse1I ACTGG 1 cut(s) 739
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 48, 201
BseGI GGATG 3 cut(s) 235, 461, 532
BseLI CCNNNNNNNGG 2 cut(s) 563, 838
BseMII CTCAG 3 cut(s) 75, 159, 332
BseNI ACTGG 1 cut(s) 739
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 3 cut(s) 292, 395, 433
BseYI CCCAGC 1 cut(s) 350
BsgI GTGCAG 1 cut(s) 949
Bsh1236I CGCG 2 cut(s) 36, 212
BshFI GGCC 3 cut(s) 605, 725, 831
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 3 cut(s) 268, 655, 807
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 906
BslI CCNNNNNNNGG 2 cut(s) 563, 838
BsmFI GGGAC 1 cut(s) 906
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 3 cut(s) 605, 725, 831
Bsp119I TTCGAA 1 cut(s) 335
Bsp1286I GDGCHC 3 cut(s) 268, 655, 807
Bsp143I GATC 3 cut(s) 85, 548, 733
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 2 cut(s) 916, 946
BspANI GGCC 3 cut(s) 605, 725, 831
BspCNI CTCAG 3 cut(s) 74, 160, 331
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 2 cut(s) 36, 212
BspMAI CTGCAG 3 cut(s) 310, 451, 702
BspT104I TTCGAA 1 cut(s) 335
BsrBI CCGCTC 2 cut(s) 918, 946
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 2 cut(s) 48, 201
BssMI GATC 3 cut(s) 85, 548, 733
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 467, 505, 882
BstAPI GCANNNNNTGC 2 cut(s) 272, 314
BstBAI YACGTR 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 198, 235, 651
BstDEI CTNAG 4 cut(s) 61, 168, 318, 387
BstDSI CCRYGG 1 cut(s) 201
BstEII GGTNACC 1 cut(s) 354
BstF5I GGATG 3 cut(s) 235, 461, 532
BstFNI CGCG 2 cut(s) 36, 212
BstH2I RGCGCY 1 cut(s) 952
BstHHI GCGC 2 cut(s) 36, 951
BstKTI GATC 3 cut(s) 88, 551, 736
BstMBI GATC 3 cut(s) 85, 548, 733
BstMWI GCNNNNNNNGC 7 cut(s) 173, 272, 314, 392, 542, 638, 946
BstPI GGTNACC 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 4 cut(s) 306, 447, 471, 698
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 2 cut(s) 36, 212
BstV1I GCAGC 3 cut(s) 292, 395, 433
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 3 cut(s) 605, 725, 831
BsuTUI ATCGAT 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 593
BtsCI GGATG 3 cut(s) 235, 461, 532
Cac8I GCNNGC 3 cut(s) 198, 235, 651
CfoI GCGC 2 cut(s) 36, 951
Cfr13I GGNCC 2 cut(s) 723, 848
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 1 cut(s) 218
CspCI CAANNNNNGTGG 4 cut(s) 348, 383, 519, 554
CviAII CATG 2 cut(s) 202, 290
DdeI CTNAG 4 cut(s) 61, 168, 318, 387
DpnI GATC 3 cut(s) 87, 550, 735
DpnII GATC 3 cut(s) 85, 548, 733
DrdI GACNNNNNNGTC 1 cut(s) 702
DseDI GACNNNNNNGTC 1 cut(s) 702
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 848
Eco72I CACGTG 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 723
EcoO65I GGTNACC 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 205, 293
FaiI YATR 8 cut(s) 203, 282, 291, 315, 481, 639, 812, 977
FalI AAGNNNNNCTT 4 cut(s) 384, 416, 579, 611
FaqI GGGAC 1 cut(s) 906
FatI CATG 2 cut(s) 201, 289
Fnu4HI GCNGC 5 cut(s) 306, 384, 447, 916, 947
FokI GGATG 3 cut(s) 242, 468, 539
Fsp4HI GCNGC 5 cut(s) 306, 384, 447, 916, 947
FspBI CTAG 2 cut(s) 720, 923
GlaI GCGC 2 cut(s) 35, 950
GluI GCNGC 5 cut(s) 306, 384, 447, 916, 947
GsaI CCCAGC 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 952
HaeIII GGCC 3 cut(s) 605, 725, 831
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 36, 951
Hin1II CATG 2 cut(s) 205, 293
Hin6I GCGC 2 cut(s) 34, 949
HinP1I GCGC 2 cut(s) 34, 949
HinfI GANTC 3 cut(s) 44, 53, 110
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 5 cut(s) 321, 414, 583, 663, 876
Hpy188III TCNNGA 3 cut(s) 134, 401, 437
Hpy8I GTNNAC 1 cut(s) 266
Hpy99I CGWCG 1 cut(s) 830
HpyAV CCTTC 3 cut(s) 595, 658, 880
HpyCH4III ACNGT 3 cut(s) 467, 505, 882
HpyCH4IV ACGT 2 cut(s) 361, 592
HpyCH4V TGCA 9 cut(s) 266, 308, 331, 449, 530, 571, 641, 700, 966
HpyF10VI GCNNNNNNNGC 7 cut(s) 173, 272, 314, 392, 542, 638, 946
HpyF3I CTNAG 4 cut(s) 61, 168, 318, 387
HpySE526I ACGT 2 cut(s) 361, 592
Hsp92II CATG 2 cut(s) 205, 293
HspAI GCGC 2 cut(s) 34, 949
Kzo9I GATC 3 cut(s) 85, 548, 733
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 3 cut(s) 292, 395, 433
LweI GCATC 4 cut(s) 127, 220, 517, 847
MaeI CTAG 2 cut(s) 720, 923
MaeII ACGT 2 cut(s) 361, 592
MaeIII GTNAC 2 cut(s) 354, 901
MalI GATC 3 cut(s) 87, 550, 735
MbiI CCGCTC 2 cut(s) 918, 946
MboI GATC 3 cut(s) 85, 548, 733
MboII GAAGA 2 cut(s) 82, 425
MhlI GDGCHC 3 cut(s) 268, 655, 807
MluCI AATT 2 cut(s) 813, 843
MluI ACGCGT 1 cut(s) 210
MseI TTAA 2 cut(s) 191, 614
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 331
MvnI CGCG 2 cut(s) 36, 212
MwoI GCNNNNNNNGC 7 cut(s) 173, 272, 314, 392, 542, 638, 946
NciI CCSGG 1 cut(s) 49
NcoI CCATGG 1 cut(s) 201
NdeII GATC 3 cut(s) 85, 548, 733
NlaIII CATG 2 cut(s) 205, 293
NspV TTCGAA 1 cut(s) 335
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 3 cut(s) 44, 53, 110
PkrI GCNGC 5 cut(s) 307, 385, 448, 917, 948
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 362
PspCI CACGTG 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 350
PspPI GGNCC 2 cut(s) 723, 848
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
PstI CTGCAG 3 cut(s) 310, 451, 702
PvuII CAGCTG 1 cut(s) 476
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 191, 614
SatI GCNGC 5 cut(s) 306, 384, 447, 916, 947
Sau3AI GATC 3 cut(s) 85, 548, 733
Sau96I GGNCC 2 cut(s) 723, 848
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 3 cut(s) 268, 655, 807
SfaNI GCATC 4 cut(s) 127, 220, 517, 847
SfcI CTRYAG 4 cut(s) 306, 447, 471, 698
SfuI TTCGAA 1 cut(s) 335
SinI GGWCC 1 cut(s) 848
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 813, 843
SsiI CCGC 2 cut(s) 916, 946
SspI AATATT 1 cut(s) 520
SspMI CTAG 2 cut(s) 720, 923
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 467, 505, 882
TaiI ACGT 2 cut(s) 364, 595
TaqI TCGA 6 cut(s) 23, 84, 113, 162, 298, 335
TasI AATT 2 cut(s) 813, 843
TauI GCSGC 2 cut(s) 918, 949
TfiI GAWTC 3 cut(s) 44, 53, 110
Tru1I TTAA 2 cut(s) 191, 614
Tru9I TTAA 2 cut(s) 191, 614
TseI GCWGC 3 cut(s) 305, 383, 446
TspDTI ATGAA 4 cut(s) 600, 767, 771, 799
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 848
XspI CTAG 2 cut(s) 720, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.