Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

12599509 .. 12600151

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG153000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGACCGCCAGTCGCCTAACAGATGAAGCCAATTCTTCACATGGAGTCATTATCAAAACTTTTGAAGATATTGAAGGACAGGCGCTTATCAGACTTTTTGATGAACTATCCGCTCCAATTTTTGGAGTAGGTCCATTTCACAAGCCTTTCCCTACAACTGGTTCTTCAGGGCCAGGGAAGTGCCACATTGTGAAATGGGCACCCCAGAAAGCAGTTCCGGCACATCCAGCAGTCGGAGCCTTTTGGACTCACTGCGGCTGGAATTCTACACTAGAGTGTGTTAGGGAAGGGGTTCCTATGATTTGTATGCCATGTAATTCTGCTGATCAAATGATAAATGCTCGATATGTGAGTGATGTTTGGACAGTTGGGCTGCAGTTGGATCAGGGAAGAGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

133

Amino Acids

14.52

Weight (kDa)

6.17

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	62 - 123	3.8e-18	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	3 cut(s)	6, 111, 255
AclWI	GGATC	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	190
AfiI	CCNNNNNNNGG	3 cut(s)	122, 158, 233
AgsI	TTSAA	2 cut(s)	65, 74
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	172
AleI	CACNNNNGTG	1 cut(s)	274
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	1 cut(s)	262
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	131, 170
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	174
BclI	TGATCA	1 cut(s)	325
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	2 cut(s)	256, 374
BlsI	GCNGC	2 cut(s)	257, 375
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	131
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	131, 170
BmiI	GGNNCC	3 cut(s)	201, 238, 294
BmrFI	CCNGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 158, 233
Bse1I	ACTGG	2 cut(s)	9, 163
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	3 cut(s)	122, 158, 233
BseNI	ACTGG	2 cut(s)	9, 163
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	360
BshFI	GGCC	1 cut(s)	172
BshNI	GGYRCC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	122, 158, 233
BsnI	GGCC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	325, 382
BspACI	CCGC	3 cut(s)	6, 111, 255
BspANI	GGCC	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	201, 238, 294
BspMAI	CTGCAG	1 cut(s)	378
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	9, 163
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	325, 382
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	328, 385
BstMBI	GATC	2 cut(s)	325, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 227, 236
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	131, 170
CviAII	CATG	2 cut(s)	41, 312
CviJI	RGCY	6 cut(s)	29, 145, 172, 239, 258, 373
CviKI_1	RGCY	6 cut(s)	29, 145, 172, 239, 258, 373
DpnI	GATC	2 cut(s)	327, 384
DpnII	GATC	2 cut(s)	325, 382
DraIII	CACNNNGTG	1 cut(s)	190
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	385
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	44, 315
FaiI	YATR	5 cut(s)	42, 299, 308, 313, 348
FatI	CATG	2 cut(s)	40, 311
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	256, 374
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	256, 374
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	256, 374
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	44, 315
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	45, 247
HpaII	CCGG	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	92, 236
HpyAV	CCTTC	2 cut(s)	68, 281
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 227, 236
Hsp92II	CATG	2 cut(s)	44, 315
HspAI	GCGC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	325, 382
LmnI	GCTCC	2 cut(s)	118, 236
Lsp1109I	GCAGC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	272
MalI	GATC	2 cut(s)	327, 384
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	2 cut(s)	325, 382
MboII	GAAGA	4 cut(s)	27, 77, 156, 402
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	4 cut(s)	31, 117, 262, 316
MlyI	GAGTC	2 cut(s)	54, 241
MmeI	TCCRAC	2 cut(s)	214, 360
MnlI	CCTC	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	274
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	218, 227, 236
NdeII	GATC	2 cut(s)	325, 382
NlaIII	CATG	2 cut(s)	44, 315
NlaIV	GGNNCC	3 cut(s)	201, 238, 294
OliI	CACNNNNGTG	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	257, 375
PleI	GAGTC	2 cut(s)	53, 241
PpsI	GAGTC	2 cut(s)	53, 241
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	3 cut(s)	201, 238, 294
PspPI	GGNCC	2 cut(s)	131, 170
PstI	CTGCAG	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	274
SatI	GCNGC	2 cut(s)	256, 374
Sau3AI	GATC	2 cut(s)	325, 382
Sau96I	GGNCC	2 cut(s)	131, 170
SchI	GAGTC	2 cut(s)	54, 241
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	2 cut(s)	133, 401
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	274
Sse9I	AATT	4 cut(s)	31, 117, 262, 316
SsiI	CCGC	3 cut(s)	6, 111, 255
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	343
TasI	AATT	4 cut(s)	31, 117, 262, 316
TauI	GCSGC	1 cut(s)	258
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	1 cut(s)	373
TspDTI	ATGAA	2 cut(s)	39, 117
TspRI	CASTG	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.