Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

89376875 .. 89378593

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGAGCAAATTACAAAGGGAAAGAGGTTGATCTTGTTCCCACTTCCCCTTGAAGGCCATATAAACCCCATGCTACAGCTGGCTAATCTTCTACACTCCAAAGGCTTCTCCATAACCATCATCCACACCCAGTTCAACTCCCCAAACCCTTCACTCCATCCACACTTCACCTTTCGCTCAATCCCAGATGGGTTGTCTGAAATTGAGGCTTCCCCCAAAGATATCATCCTTCTCTTCTCTCTTTTCAATACTAAATGCGTTGAACCCTTCAAGTTATGCTTGTCTAGCTTGTTATCAGAGGAGCCTGTTGCTTGTTTGATCTCTGACTCTATATTCCATTTCACTCAATCTGTTGCTGAGAGCTTTAAGCTCCCAATGATTGTCTTCGAGACCGGGGGTATGACTTCTTATGCTGTTTTTACTCAGTTTCCACTATTAAGAGAAAAGGGCTACCTTCCGGTCACGCAAGATTCCCAACTAGAAAAGGTGGTGACGGAGCTTCCACCTCTCAGAATCAAAGACCTTCCGGTGATCCCAAAAGGCGACCCCGAGAAATATTTTGAACTATGTGTAGTTATTGTGACCAAAATTGCAGCCTCTGATGGAGTCATTTTTAACACTTTTAGAGACCTTGAAGAGCAAGGACTGGCAACATTGCACAAACAATACCCTAATCTTCTAGTTTTCCCAATAGGCCCATTTCACAAGTGTGTCCCTGAGGAAGCCTCTTCTTCAATTAGCGACCAAAGTTGCATTTCTTGGCTGAACACCCGAGCACCAAACTCTGTTATCTATGTTAGCTTTGGGACCATTGCAGCAATAACCGAAGCTCAATTTTTGGAGATAGCTTGGGGACTAGCCAATAGCAACCAACCTTTCTTGTGGGTGGTTCGACCTGGATTAGTCCACGGGTCGGATTGGCTCGAACAATTGCCTAGTGGGTTTCTTGAGAATTTGAATGGGAGGGGTCACATTGTGAAATGGGCACCCCAAAAAGAAGTGTTGGCACATCCATCAGTTGGAGCTTTTTGGACTCACAATGGTTGGAATTCTACATTGGAGAGTGTTTGTGAAGGTGTCCCTATGATTTGTATGCCTTGTTTCAATGATCAACTGGTGCTTGCAAGGTATGTGAGTGAGGTTTGGAAAATTGGGTTGCAGTTTGAGAATGGAATTGAGAGAGGCGAGATTGAAGGAACAATTTGGAAACTAATGGAGGAGAAAGAAGGAGAAGAAATCAGAGACAGAAGCTTGAAGCTAATGGAGAAAGCTAATGTTTGCTTCAAACCAGGTGGATCTTCATACCAATGCTTGGATGGCTTGGTCAAACATATTTTATCATTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

449

Amino Acids

50.3

Weight (kDa)

5.45

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	254 - 405	1.1e-28	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	985
AccB7I	CCANNNNNTGG	2 cut(s)	1019, 1312
AclWI	GGATC	2 cut(s)	526, 1303
AcsI	RAATTY	2 cut(s)	952, 1048
AdeI	CACNNNGTG	1 cut(s)	976
AfiI	CCNNNNNNNGG	4 cut(s)	53, 913, 1019, 1312
AjnI	CCWGG	2 cut(s)	895, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	1040, 1072
AleI	CACNNNNGTG	1 cut(s)	708
Alw21I	GWGCWC	1 cut(s)	778
Alw26I	GTCTC	3 cut(s)	383, 621, 1236
AlwI	GGATC	2 cut(s)	526, 1303
AlwNI	CAGNNNCTG	1 cut(s)	599
Ama87I	CYCGRG	2 cut(s)	548, 771
AoxI	GGCC	2 cut(s)	55, 694
ApeKI	GCWGC	2 cut(s)	593, 815
ApoI	RAATTY	2 cut(s)	952, 1048
AspS9I	GGNCC	2 cut(s)	695, 807
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	3 cut(s)	160, 502, 541
AvaI	CYCGRG	2 cut(s)	548, 771
AvaII	GGWCC	1 cut(s)	807
AxyI	CCTNAGG	1 cut(s)	717
BaeGI	GKGCMC	1 cut(s)	988
BanI	GGYRCC	1 cut(s)	985
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	778
BbvI	GCAGC	2 cut(s)	605, 827
BccI	CCATC	6 cut(s)	125, 165, 182, 596, 1021, 1310
BciT130I	CCWGG	2 cut(s)	897, 1290
BclI	TGATCA	1 cut(s)	1108
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	3 cut(s)	383, 621, 1236
BfaI	CTAG	5 cut(s)	285, 479, 680, 857, 936
BfmI	CTRYAG	1 cut(s)	74
BisI	GCNGC	2 cut(s)	594, 816
BlsI	GCNGC	2 cut(s)	595, 817
Bme1390I	CCNGG	3 cut(s)	394, 897, 1290
Bme18I	GGWCC	1 cut(s)	807
BmeT110I	CYCGRG	2 cut(s)	548, 771
BmgT120I	GGNCC	2 cut(s)	695, 807
BmiI	GGNNCC	3 cut(s)	303, 808, 987
BmrFI	CCNGG	3 cut(s)	394, 897, 1290
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	376
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpuEI	CTTGAG	1 cut(s)	968
BpuMI	CCSGG	1 cut(s)	394
BsaI	GGTCTC	2 cut(s)	383, 621
BsaJI	CCNNGG	2 cut(s)	393, 907
BsaWI	WCCGGW	2 cut(s)	457, 526
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 913, 1019, 1312
Bse1I	ACTGG	3 cut(s)	130, 651, 1119
Bse21I	CCTNAGG	1 cut(s)	717
Bse3DI	GCAATG	2 cut(s)	653, 810
BseBI	CCWGG	2 cut(s)	897, 1290
BseDI	CCNNGG	2 cut(s)	393, 907
BseGI	GGATG	5 cut(s)	120, 157, 225, 1009, 1321
BseLI	CCNNNNNNNGG	4 cut(s)	53, 913, 1019, 1312
BseMI	GCAATG	2 cut(s)	653, 810
BseMII	CTCAG	4 cut(s)	348, 437, 523, 708
BseNI	ACTGG	3 cut(s)	130, 651, 1119
BseRI	GAGGAG	2 cut(s)	314, 1232
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	2 cut(s)	605, 827
BshFI	GGCC	2 cut(s)	57, 696
BshNI	GGYRCC	1 cut(s)	985
BsiHKAI	GWGCWC	1 cut(s)	778
BsiHKCI	CYCGRG	2 cut(s)	548, 771
BsiSI	CCGG	3 cut(s)	393, 458, 527
BslFI	GGGAC	4 cut(s)	698, 820, 867, 1064
BslI	CCNNNNNNNGG	4 cut(s)	53, 913, 1019, 1312
BsmAI	GTCTC	3 cut(s)	383, 621, 1236
BsmFI	GGGAC	4 cut(s)	698, 820, 867, 1064
BsnI	GGCC	2 cut(s)	57, 696
Bso31I	GGTCTC	2 cut(s)	383, 621
BsoBI	CYCGRG	2 cut(s)	548, 771
Bsp1286I	GDGCHC	2 cut(s)	778, 988
Bsp143I	GATC	5 cut(s)	30, 318, 531, 1108, 1295
BspANI	GGCC	2 cut(s)	57, 696
BspCNI	CTCAG	4 cut(s)	349, 436, 522, 709
BspLI	GGNNCC	3 cut(s)	303, 808, 987
BspPI	GGATC	2 cut(s)	526, 1303
BspQI	GCTCTTC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	985
BspTNI	GGTCTC	2 cut(s)	383, 621
BsrDI	GCAATG	2 cut(s)	653, 810
BsrI	ACTGG	3 cut(s)	130, 651, 1119
BssECI	CCNNGG	2 cut(s)	393, 907
BssMI	GATC	5 cut(s)	30, 318, 531, 1108, 1295
Bst2UI	CCWGG	2 cut(s)	897, 1290
Bst6I	CTCTTC	3 cut(s)	239, 630, 733
BstC8I	GCNNGC	2 cut(s)	81, 1122
BstDEI	CTNAG	4 cut(s)	357, 423, 509, 717
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	5 cut(s)	120, 157, 225, 1009, 1321
BstKTI	GATC	5 cut(s)	33, 321, 534, 1111, 1298
BstMAI	GTCTC	3 cut(s)	383, 621, 1236
BstMBI	GATC	5 cut(s)	30, 318, 531, 1108, 1295
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 1317
BstNI	CCWGG	2 cut(s)	897, 1290
BstSCI	CCNGG	3 cut(s)	392, 895, 1288
BstSFI	CTRYAG	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	988
BstV1I	GCAGC	2 cut(s)	605, 827
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	1295
BstYI	RGATCY	1 cut(s)	1295
Bsu36I	CCTNAGG	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	57, 696
BtgI	CCRYGG	1 cut(s)	907
BtsCI	GGATG	5 cut(s)	120, 157, 225, 1009, 1321
Cac8I	GCNNGC	2 cut(s)	81, 1122
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	695, 807
CsiI	ACCWGGT	1 cut(s)	1288
CspCI	CAANNNNNGTGG	2 cut(s)	1273, 1308
CviAII	CATG	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	357, 423, 509, 717
DpnI	GATC	5 cut(s)	32, 320, 533, 1110, 1297
DpnII	GATC	5 cut(s)	30, 318, 531, 1108, 1295
DraIII	CACNNNGTG	1 cut(s)	976
Eam1104I	CTCTTC	3 cut(s)	239, 630, 733
EarI	CTCTTC	3 cut(s)	239, 630, 733
Eco31I	GGTCTC	2 cut(s)	383, 621
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	807
Eco81I	CCTNAGG	1 cut(s)	717
Eco88I	CYCGRG	2 cut(s)	548, 771
EcoRI	GAATTC	1 cut(s)	1048
EcoRII	CCWGG	2 cut(s)	895, 1288
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	1 cut(s)	73
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	4 cut(s)	698, 820, 867, 1064
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	1108
Fnu4HI	GCNGC	2 cut(s)	594, 816
FokI	GGATG	5 cut(s)	107, 144, 212, 996, 1328
Fsp4HI	GCNGC	2 cut(s)	594, 816
FspBI	CTAG	5 cut(s)	285, 479, 680, 857, 936
GluI	GCNGC	2 cut(s)	594, 816
HaeIII	GGCC	2 cut(s)	57, 696
HapII	CCGG	3 cut(s)	393, 458, 527
Hin1II	CATG	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	1249
HinfI	GANTC	5 cut(s)	326, 470, 513, 606, 1033
HpaII	CCGG	3 cut(s)	393, 458, 527
HphI	GGTGA	3 cut(s)	160, 502, 541
Hpy166II	GTNNAC	1 cut(s)	907
Hpy188I	TCNGA	7 cut(s)	199, 298, 325, 512, 601, 916, 1241
Hpy188III	TCNNGA	2 cut(s)	388, 947
Hpy8I	GTNNAC	1 cut(s)	907
HpyAV	CCTTC	9 cut(s)	47, 159, 239, 277, 464, 533, 1067, 1187, 1220
HpyCH4V	TGCA	6 cut(s)	593, 658, 753, 815, 1124, 1159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 1317
HpyF3I	CTNAG	4 cut(s)	357, 423, 509, 717
Hsp92II	CATG	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	1108
Kzo9I	GATC	5 cut(s)	30, 318, 531, 1108, 1295
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	5 cut(s)	4, 301, 375, 496, 1022
Lsp1109I	GCAGC	2 cut(s)	605, 827
MabI	ACCWGGT	1 cut(s)	1288
MaeI	CTAG	5 cut(s)	285, 479, 680, 857, 936
MaeIII	GTNAC	4 cut(s)	460, 490, 580, 968
MalI	GATC	5 cut(s)	32, 320, 533, 1110, 1297
MboI	GATC	5 cut(s)	30, 318, 531, 1108, 1295
MboII	GAAGA	9 cut(s)	80, 226, 376, 647, 668, 720, 723, 1244, 1290
MfeI	CAATTG	1 cut(s)	929
MflI	RGATCY	1 cut(s)	1295
MhlI	GDGCHC	2 cut(s)	778, 988
MlyI	GAGTC	3 cut(s)	320, 615, 1027
MmeI	TCCRAC	3 cut(s)	894, 1000, 1025
MseI	TTAA	3 cut(s)	366, 437, 615
MslI	CAYNNNNRTG	2 cut(s)	708, 1306
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	3 cut(s)	393, 458, 527
MspR9I	CCNGG	3 cut(s)	394, 897, 1290
MunI	CAATTG	1 cut(s)	929
MvaI	CCWGG	2 cut(s)	897, 1290
MwoI	GCNNNNNNNGC	2 cut(s)	285, 1317
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	5 cut(s)	30, 318, 531, 1108, 1295
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	3 cut(s)	303, 808, 987
NmuCI	GTSAC	4 cut(s)	460, 490, 580, 968
OliI	CACNNNNGTG	1 cut(s)	708
PciSI	GCTCTTC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	470, 513
PflMI	CCANNNNNTGG	2 cut(s)	1019, 1312
PkrI	GCNGC	2 cut(s)	595, 817
PleI	GAGTC	3 cut(s)	320, 614, 1027
PpsI	GAGTC	3 cut(s)	320, 614, 1027
Psp6I	CCWGG	2 cut(s)	895, 1288
PspGI	CCWGG	2 cut(s)	895, 1288
PspN4I	GGNNCC	3 cut(s)	303, 808, 987
PspPI	GGNCC	2 cut(s)	695, 807
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	1295
PvuII	CAGCTG	1 cut(s)	79
RseI	CAYNNNNRTG	2 cut(s)	708, 1306
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	366, 437, 615
SatI	GCNGC	2 cut(s)	594, 816
Sau3AI	GATC	5 cut(s)	30, 318, 531, 1108, 1295
Sau96I	GGNCC	2 cut(s)	695, 807
SchI	GAGTC	3 cut(s)	320, 615, 1027
ScrFI	CCNGG	3 cut(s)	394, 897, 1290
SduI	GDGCHC	2 cut(s)	778, 988
SexAI	ACCWGGT	1 cut(s)	1288
SfcI	CTRYAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	2 cut(s)	708, 1306
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	5 cut(s)	285, 479, 680, 857, 936
StyD4I	CCNGG	3 cut(s)	392, 895, 1288
TaqI	TCGA	3 cut(s)	387, 892, 924
TfiI	GAWTC	2 cut(s)	470, 513
Tru1I	TTAA	3 cut(s)	366, 437, 615
Tru9I	TTAA	3 cut(s)	366, 437, 615
TseFI	GTSAC	4 cut(s)	460, 490, 580, 968
TseI	GCWGC	2 cut(s)	593, 815
Tsp45I	GTSAC	4 cut(s)	460, 490, 580, 968
TspDTI	ATGAA	1 cut(s)	1290
TspGWI	ACGGA	1 cut(s)	509
Van91I	CCANNNNNTGG	2 cut(s)	1019, 1312
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	2 cut(s)	952, 1048
XcmI	CCANNNNNNNNNTGG	2 cut(s)	76, 1313
XspI	CTAG	5 cut(s)	285, 479, 680, 857, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.