Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

15946390 .. 15947223

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATGCCCGATTGCGACCCTGAAGATTTCTATCGACTGATAACCAACATGGCAAATGAACCCAAGGCTTCTCATGCACTCATCTTCAATACTTTTGAAGATCTTGAAGGACAAGCACTTGCCACACTTCGCCAAGAATATTACCCCAATATTCCAATTTTCTCACTAGGTCCATTTCACAAGTGCGGCCCTACAACCTCTTCTTCTTCAACTAGCTTACAATCACAAGACCAAAGTTGCATTTCATGGCTAAACACTCAAGCGCCAAAATCTGTTGCTTATGTCAGCTTTGGGAGCCTTGCCGAGATAAATCAAGCTCAATTTTTGGAGGTTGCTTGGGGGTTGGCCAACAGTGGCCAACCTTTTTTGTGGGTGATTCGACCCGGATTAGTTCAAGAGTCCAACTGGCTTAAAATGTTGCCTAATGGGTTTCTAGAAGCGTTGAAAGAGAGGGCCCATGTCGTGAAATGGGCTCCACAAAAAGAAGTGTTGGCCCACCCAGCAGTCGGAGCCTTTTGGACTCACTGTGGTTGGAATTCTACATTGGAGAGCATTTGTGAAGGCGTACCTATGATTTGTACGCCATGTTTCAGTGATCAAATGGTGGATGCAAGATTTGTGAGTGATGTTTGGAAGGTAGGGTTGCAGTTGGAGCATGGGATTGAGAGAGGTGAGGTTGAACGAACAATTAGAAGACTGATGGTTGAGAAAGAAGGGGAAGAGATCAAAGAGAGAGCCTTAAAGTTGATGGAAAAGGCAAATCTTTCCCTCAAAGAAGGTGGCTCTTCGTACCAATCTTTAGATGGCTTGGTTAATCATATTTTATCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

278

Amino Acids

31.01

Weight (kDa)

5.22

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	77 - 235	4.6e-30	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	832
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	2 cut(s)	345, 355
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	3 cut(s)	567, 580, 791
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	7 cut(s)	88, 98, 107, 210, 395, 445, 680
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	3 cut(s)	216, 288, 317
AluI	AGCT	3 cut(s)	216, 288, 317
AoxI	GGCC	5 cut(s)	187, 345, 355, 453, 492
ApaI	GGGCCC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	535
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	5 cut(s)	170, 188, 453, 454, 493
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	2 cut(s)	385, 683
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	457
BalI	TGGCCA	2 cut(s)	347, 357
BanII	GRGCYC	2 cut(s)	457, 475
BbsI	GAAGAC	1 cut(s)	700
BccI	CCATC	3 cut(s)	694, 742, 797
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	384
BfaI	CTAG	3 cut(s)	167, 213, 434
BfoI	RGCGCY	1 cut(s)	266
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	5 cut(s)	170, 188, 453, 454, 493
BmiI	GGNNCC	4 cut(s)	296, 455, 474, 511
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	700
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	410
Bse8I	GATNNNNATC	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	613
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	499
BshFI	GGCC	5 cut(s)	189, 347, 357, 455, 494
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	506
BsnI	GGCC	5 cut(s)	189, 347, 357, 455, 494
Bsp120I	GGGCCC	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	457, 475
Bsp143I	GATC	3 cut(s)	100, 595, 723
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	5 cut(s)	189, 347, 357, 455, 494
BspLI	GGNNCC	4 cut(s)	296, 455, 474, 511
BspQI	GCTCTTC	1 cut(s)	790
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	100, 595, 723
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	353, 527
Bst6I	CTCTTC	3 cut(s)	205, 714, 790
BstF5I	GGATG	1 cut(s)	613
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	3 cut(s)	103, 598, 726
BstMBI	GATC	3 cut(s)	100, 595, 723
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 294, 500, 509, 652
BstSCI	CCNGG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	189, 347, 357, 455, 494
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	3 cut(s)	358, 523, 598
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	5 cut(s)	170, 188, 453, 454, 493
Csp6I	GTAC	3 cut(s)	566, 579, 790
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	6 cut(s)	49, 74, 246, 458, 585, 656
CviQI	GTAC	3 cut(s)	566, 579, 790
DpnI	GATC	3 cut(s)	102, 597, 725
DpnII	GATC	3 cut(s)	100, 595, 723
EaeI	YGGCCR	2 cut(s)	345, 355
Eam1104I	CTCTTC	3 cut(s)	205, 714, 790
EarI	CTCTTC	3 cut(s)	205, 714, 790
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	457, 475
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	2 cut(s)	457, 475
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	6 cut(s)	52, 77, 249, 461, 588, 659
FatI	CATG	6 cut(s)	48, 73, 245, 457, 584, 655
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	620
FriOI	GRGCYC	2 cut(s)	457, 475
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	3 cut(s)	167, 213, 434
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	503
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	5 cut(s)	189, 347, 357, 455, 494
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	6 cut(s)	52, 77, 249, 461, 588, 659
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	3 cut(s)	376, 398, 520
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	385, 683
Hpy188I	TCNGA	1 cut(s)	509
Hpy188III	TCNNGA	4 cut(s)	104, 395, 434, 463
HpyAV	CCTTC	5 cut(s)	101, 554, 628, 707, 770
HpyCH4III	ACNGT	2 cut(s)	353, 527
HpyCH4V	TGCA	4 cut(s)	77, 240, 611, 646
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 294, 500, 509, 652
Hsp92II	CATG	6 cut(s)	52, 77, 249, 461, 588, 659
HspAI	GCGC	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	100, 595, 723
LguI	GCTCTTC	1 cut(s)	790
LmnI	GCTCC	4 cut(s)	294, 478, 509, 652
LpnPI	CCDG	4 cut(s)	33, 391, 397, 513
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	3 cut(s)	167, 213, 434
MalI	GATC	3 cut(s)	102, 597, 725
MboI	GATC	3 cut(s)	100, 595, 723
MboII	GAAGA	9 cut(s)	35, 76, 110, 192, 195, 198, 705, 731, 777
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	457, 475
MlsI	TGGCCA	2 cut(s)	347, 357
MluCI	AATT	4 cut(s)	156, 320, 535, 687
MluNI	TGGCCA	2 cut(s)	347, 357
MlyI	GAGTC	2 cut(s)	407, 514
MmeI	TCCRAC	4 cut(s)	426, 487, 512, 630
MnlI	CCTC	6 cut(s)	208, 322, 444, 662, 667, 779
Mox20I	TGGCCA	2 cut(s)	347, 357
MscI	TGGCCA	2 cut(s)	347, 357
MseI	TTAA	3 cut(s)	411, 740, 813
Msp20I	TGGCCA	2 cut(s)	347, 357
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	5 cut(s)	74, 294, 500, 509, 652
NciI	CCSGG	1 cut(s)	384
NdeII	GATC	3 cut(s)	100, 595, 723
NlaIII	CATG	6 cut(s)	52, 77, 249, 461, 588, 659
NlaIV	GGNNCC	4 cut(s)	296, 455, 474, 511
NmeAIII	GCCGAG	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	790
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	2 cut(s)	406, 514
PpsI	GAGTC	2 cut(s)	406, 514
PsiI	TTATAA	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	499
PspN4I	GGNNCC	4 cut(s)	296, 455, 474, 511
PspOMI	GGGCCC	1 cut(s)	453
PspPI	GGNCC	5 cut(s)	170, 188, 453, 454, 493
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	3 cut(s)	567, 580, 791
RsaNI	GTAC	3 cut(s)	566, 579, 790
SapI	GCTCTTC	1 cut(s)	790
SaqAI	TTAA	3 cut(s)	411, 740, 813
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	3 cut(s)	100, 595, 723
Sau96I	GGNCC	5 cut(s)	170, 188, 453, 454, 493
SchI	GAGTC	2 cut(s)	407, 514
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	457, 475
SfaNI	GCATC	1 cut(s)	598
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	156, 320, 535, 687
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	2 cut(s)	140, 151
SspMI	CTAG	3 cut(s)	167, 213, 434
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	353, 527
TaqI	TCGA	2 cut(s)	34, 379
TasI	AATT	4 cut(s)	156, 320, 535, 687
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	411, 740, 813
Tru9I	TTAA	3 cut(s)	411, 740, 813
TscAI	CASTG	3 cut(s)	358, 530, 598
TspDTI	ATGAA	2 cut(s)	72, 234
TspRI	CASTG	3 cut(s)	358, 530, 598
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	535
XbaI	TCTAGA	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	800
XspI	CTAG	3 cut(s)	167, 213, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.