Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

68135945 .. 68144629

Gene Structure 8685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAGGATATTAAGAAGGGTCGGAGGTTGATCCTCTTGCCACTTCCACTTCAAGGCCACATAAACCCCATGCTACAGCTAGTCAACATTCTACATTCCAAAGGCTTTTCCATAACCATCATCCACACCCAGTTCAATTCCTTAAACCCTTCAACCCATCCACACTCCACCTTTCACTCGATCCCAGACAGGGTATCTGAAGCTGAGGTCACCACAAAAGATATTCTCCTTCTTTTCTGTCTTCTCAATACTAGGTACAGTGAGCCTTTCCGCAAATGCTTGGCTAGGATATTGTTATCTGATGATGTTGGGGATGAGCCTAGCCTTAAGCTCCCCAATATTGTGTTAGAGACTGGAGGTGTCTCTCCTATTGCTGTTTTTAGGTCATTTCCACTTCTGCGGGAAAAGGGTTACCTCAAAATACAAGAAGACCCGGTTGTAGAGCTTCCACATCTGAAAGTAAAAGACCTTCCAGTGACTCCAAATGGTGACCCCGAGAATTATTACCAACTATGTGTCATGGTCACTTCTAAAATGGCCACCTCCGATGGGCTCATTTTTAATTCCTTTCAAGATCTTGAACAAGATGTATTGTGCACACTTTACAAAGAGATCCCCAACCTTCCAGTTTTCCCAATAGCTCCATTTCACAAATTCATATCTGCACAAGACCAAGGTTGCATATCTTGGCTTGATACACAAGCACCAAAATCTGTCATCTATGTTAGCTTGGGGAAAATTGCATCAATAAATGAAGCAAAATTTCTGGAGATAGCTTGGGGACTAGCCAACAGCAACCAAACCTTTTTGTGGGTTGTTCGACCCGAAGTAAGAGGACACATTGTAAAATGGGCTCCCCAAAAAGAAGTACTGGCACATTCAGCAGTTAGAGCCTTTTGGACTCACAATGGGTGGAACTCTACACCGGAGAGTATCTGTGAAGGGATCCCTATGATTTGTATGCCATGTTTCAATGATCAAATGATGATTGCAAGATATGTAAGTGACGTTTGCAAGGTCGGTTTGCAGTTTGAGCATGGGGTTGAGAGAGACGAGATCAAAAGAATGATTAGAAAACTGATGGTGGAGAAAGAAGGGAATGAGATCAGGGACAGGAGCTCGAAGCTAATGGAGAGGAGCTTGAAGCTAATAGAGAAGGCAAGTCATTCCTTGAAAGAAGGTGGCTCCTCAAACCAATCCTTGGATGCCTTGGTCAAACACATTTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

410

Amino Acids

46.33

Weight (kDa)

6.92

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	225 - 357	1.5e-27	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1201
AciI	CCGC	2 cut(s)	271, 400
AclWI	GGATC	5 cut(s)	25, 175, 607, 940, 953
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	2 cut(s)	653, 761
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	257, 870
AfiI	CCNNNNNNNGG	5 cut(s)	53, 190, 549, 810, 1201
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	8 cut(s)	53, 136, 153, 572, 581, 973, 1144, 1174
Alw21I	GWGCWC	2 cut(s)	599, 1121
Alw26I	GTCTC	3 cut(s)	344, 367, 1044
Alw44I	GTGCAC	1 cut(s)	595
AlwI	GGATC	5 cut(s)	25, 175, 607, 940, 953
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	2 cut(s)	55, 537
ApaLI	GTGCAC	1 cut(s)	595
ApoI	RAATTY	2 cut(s)	653, 761
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	202, 500
AvaI	CYCGRG	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	945
BanII	GRGCYC	3 cut(s)	555, 856, 1121
BarI	GAAGNNNNNNTAC	2 cut(s)	453, 485
BbsI	GAAGAC	2 cut(s)	233, 435
Bbv12I	GWGCWC	2 cut(s)	599, 1121
BbvCI	CCTCAGC	1 cut(s)	204
BccI	CCATC	4 cut(s)	125, 165, 542, 1075
BclI	TGATCA	1 cut(s)	976
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	3 cut(s)	344, 367, 1044
BfaI	CTAG	5 cut(s)	80, 252, 285, 321, 785
BfmI	CTRYAG	1 cut(s)	74
BfrI	CTTAAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	574
BmcAI	AGTACT	1 cut(s)	870
Bme1390I	CCNGG	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	494
BmiI	GGNNCC	3 cut(s)	855, 947, 1186
BmrFI	CCNGG	1 cut(s)	434
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	752, 1195
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	2 cut(s)	233, 435
BpmI	CTGGAG	2 cut(s)	375, 788
Bpu10I	CCTNAGC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	673, 1200, 1209
BsaWI	WCCGGW	1 cut(s)	925
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 190, 549, 810, 1201
Bse1I	ACTGG	5 cut(s)	130, 358, 473, 626, 876
BseDI	CCNNGG	3 cut(s)	673, 1200, 1209
BseGI	GGATG	4 cut(s)	120, 157, 319, 1210
BseLI	CCNNNNNNNGG	5 cut(s)	53, 190, 549, 810, 1201
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	5 cut(s)	130, 358, 473, 626, 876
BseRI	GAGGAG	2 cut(s)	1150, 1177
BseSI	GKGCMC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	57, 539
BsiHKAI	GWGCWC	2 cut(s)	599, 1121
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	434, 926
BslFI	GGGAC	2 cut(s)	795, 1124
BslI	CCNNNNNNNGG	5 cut(s)	53, 190, 549, 810, 1201
BsmAI	GTCTC	3 cut(s)	344, 367, 1044
BsmBI	CGTCTC	1 cut(s)	1044
BsmFI	GGGAC	2 cut(s)	795, 1124
BsnI	GGCC	2 cut(s)	57, 539
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	4 cut(s)	555, 599, 856, 1121
Bsp143I	GATC	8 cut(s)	30, 180, 574, 612, 945, 976, 1056, 1104
BspACI	CCGC	2 cut(s)	271, 400
BspANI	GGCC	2 cut(s)	57, 539
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	855, 947, 1186
BspPI	GGATC	5 cut(s)	25, 175, 607, 940, 953
BspTI	CTTAAG	1 cut(s)	326
BsrI	ACTGG	5 cut(s)	130, 358, 473, 626, 876
BssECI	CCNNGG	3 cut(s)	673, 1200, 1209
BssMI	GATC	8 cut(s)	30, 180, 574, 612, 945, 976, 1056, 1104
BssT1I	CCWWGG	3 cut(s)	673, 1200, 1209
Bst4CI	ACNGT	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	204
BstEII	GGTNACC	3 cut(s)	208, 410, 488
BstF5I	GGATG	4 cut(s)	120, 157, 319, 1210
BstKTI	GATC	8 cut(s)	33, 183, 577, 615, 948, 979, 1059, 1107
BstMAI	GTCTC	3 cut(s)	344, 367, 1044
BstMBI	GATC	8 cut(s)	30, 180, 574, 612, 945, 976, 1056, 1104
BstMWI	GCNNNNNNNGC	3 cut(s)	881, 890, 1033
BstPI	GGTNACC	3 cut(s)	208, 410, 488
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	599
BstV2I	GAAGAC	2 cut(s)	233, 435
BstX2I	RGATCY	3 cut(s)	574, 612, 945
BstYI	RGATCY	3 cut(s)	574, 612, 945
BsuRI	GGCC	2 cut(s)	57, 539
BtsCI	GGATG	4 cut(s)	120, 157, 319, 1210
BtsIMutI	CAGTG	2 cut(s)	265, 480
Csp6I	GTAC	2 cut(s)	256, 869
CviAII	CATG	4 cut(s)	70, 520, 966, 1037
CviQI	GTAC	2 cut(s)	256, 869
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	8 cut(s)	32, 182, 576, 614, 947, 978, 1058, 1106
DpnII	GATC	8 cut(s)	30, 180, 574, 612, 945, 976, 1056, 1104
EaeI	YGGCCR	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	1119
Eco130I	CCWWGG	3 cut(s)	673, 1200, 1209
Eco24I	GRGCYC	3 cut(s)	555, 856, 1121
Eco53kI	GAGCTC	1 cut(s)	1119
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	494
Eco91I	GGTNACC	3 cut(s)	208, 410, 488
EcoICRI	GAGCTC	1 cut(s)	1119
EcoO65I	GGTNACC	3 cut(s)	208, 410, 488
EcoT14I	CCWWGG	3 cut(s)	673, 1200, 1209
EcoT38I	GRGCYC	3 cut(s)	555, 856, 1121
ErhI	CCWWGG	3 cut(s)	673, 1200, 1209
Esp3I	CGTCTC	1 cut(s)	1044
FaeI	CATG	4 cut(s)	73, 523, 969, 1040
FaqI	GGGAC	2 cut(s)	795, 1124
FatI	CATG	4 cut(s)	69, 519, 965, 1036
FauI	CCCGC	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	976
FokI	GGATG	4 cut(s)	107, 144, 326, 1217
FriOI	GRGCYC	3 cut(s)	555, 856, 1121
FspBI	CTAG	5 cut(s)	80, 252, 285, 321, 785
GsuI	CTGGAG	2 cut(s)	375, 788
HaeIII	GGCC	2 cut(s)	57, 539
HapII	CCGG	2 cut(s)	434, 926
Hin1II	CATG	4 cut(s)	73, 523, 969, 1040
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	478, 901
HpaII	CCGG	2 cut(s)	434, 926
HphI	GGTGA	2 cut(s)	202, 500
Hpy166II	GTNNAC	2 cut(s)	85, 597
Hpy188I	TCNGA	5 cut(s)	24, 199, 301, 456, 547
Hpy188III	TCNNGA	3 cut(s)	572, 578, 767
Hpy8I	GTNNAC	2 cut(s)	85, 597
HpyAV	CCTTC	9 cut(s)	10, 159, 239, 479, 632, 935, 1088, 1150, 1172
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	1008
HpyCH4V	TGCA	7 cut(s)	597, 665, 681, 743, 992, 1014, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	881, 890, 1033
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	1008
Hsp92II	CATG	4 cut(s)	73, 523, 969, 1040
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	8 cut(s)	30, 180, 574, 612, 945, 976, 1056, 1104
LmnI	GCTCC	6 cut(s)	336, 646, 859, 1116, 1137, 1190
LweI	GCATC	2 cut(s)	752, 1195
MaeI	CTAG	5 cut(s)	80, 252, 285, 321, 785
MaeII	ACGT	1 cut(s)	1008
MaeIII	GTNAC	6 cut(s)	208, 410, 475, 488, 523, 1004
MalI	GATC	8 cut(s)	32, 182, 576, 614, 947, 978, 1058, 1106
MboI	GATC	8 cut(s)	30, 180, 574, 612, 945, 976, 1056, 1104
MboII	GAAGA	2 cut(s)	233, 440
MflI	RGATCY	3 cut(s)	574, 612, 945
MhlI	GDGCHC	4 cut(s)	555, 599, 856, 1121
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	6 cut(s)	136, 499, 562, 653, 738, 761
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	2 cut(s)	472, 895
MnlI	CCTC	9 cut(s)	18, 44, 199, 350, 425, 553, 827, 1128, 1198
Mox20I	TGGCCA	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	4 cut(s)	12, 143, 327, 561
Msp20I	TGGCCA	1 cut(s)	539
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	2 cut(s)	434, 926
MspR9I	CCNGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	3 cut(s)	881, 890, 1033
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	8 cut(s)	30, 180, 574, 612, 945, 976, 1056, 1104
NlaIII	CATG	4 cut(s)	73, 523, 969, 1040
NlaIV	GGNNCC	3 cut(s)	855, 947, 1186
NmuCI	GTSAC	5 cut(s)	208, 475, 488, 523, 1004
PflMI	CCANNNNNTGG	1 cut(s)	1201
PleI	GAGTC	2 cut(s)	472, 895
PpsI	GAGTC	2 cut(s)	472, 895
Psp124BI	GAGCTC	1 cut(s)	1121
PspEI	GGTNACC	3 cut(s)	208, 410, 488
PspN4I	GGNNCC	3 cut(s)	855, 947, 1186
PsuI	RGATCY	3 cut(s)	574, 612, 945
RsaI	GTAC	2 cut(s)	257, 870
RsaNI	GTAC	2 cut(s)	256, 869
SacI	GAGCTC	1 cut(s)	1121
SaqAI	TTAA	4 cut(s)	12, 143, 327, 561
Sau3AI	GATC	8 cut(s)	30, 180, 574, 612, 945, 976, 1056, 1104
ScaI	AGTACT	1 cut(s)	870
SchI	GAGTC	2 cut(s)	472, 895
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	4 cut(s)	555, 599, 856, 1121
SfaNI	GCATC	2 cut(s)	752, 1195
SfcI	CTRYAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	6 cut(s)	136, 499, 562, 653, 738, 761
SsiI	CCGC	2 cut(s)	271, 400
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	5 cut(s)	80, 252, 285, 321, 785
SstI	GAGCTC	1 cut(s)	1121
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	3 cut(s)	673, 1200, 1209
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	1011
TaqI	TCGA	3 cut(s)	179, 820, 1121
TasI	AATT	6 cut(s)	136, 499, 562, 653, 738, 761
TatI	WGTACW	1 cut(s)	868
Tru1I	TTAA	4 cut(s)	12, 143, 327, 561
Tru9I	TTAA	4 cut(s)	12, 143, 327, 561
TscAI	CASTG	2 cut(s)	265, 480
TseFI	GTSAC	5 cut(s)	208, 475, 488, 523, 1004
Tsp45I	GTSAC	5 cut(s)	208, 475, 488, 523, 1004
TspDTI	ATGAA	2 cut(s)	646, 768
TspRI	CASTG	2 cut(s)	265, 480
Van91I	CCANNNNNTGG	1 cut(s)	1201
Vha464I	CTTAAG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	595
XapI	RAATTY	2 cut(s)	653, 761
XspI	CTAG	5 cut(s)	80, 252, 285, 321, 785
ZrmI	AGTACT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.