Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

60567638 .. 60569553

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG331600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGATCAACTTAAGAAGGGTCGGAGATTGATACTCTTCCCACTGCCCTTTCAAGGCCATATAAATCCCATGCTTGAGCTGGCCAATATTTTACACTCGAAAGGCTTCTCAATAACCATAATCCAAAGCAACTTCAACTCTCTCAACCCTTCAAGCCATCCCCACTTCATCTTCCACTCAATAGATATTGGCTTGTCTGAAAGCGGAACCTCAACAAAGGATCCGCTCCTTCTTCTTTCTCGTCTAAATGAAAATTCTCGTGAACCTTTCCAGGAATGTTTGGCTACGTTGTTGTCTGATGTTTCGAAGGAGCCTGTTGGTTGCTTAATCACCGACTCCGTCTATGACTTCGCTCAATCTGTTGCAGAGAGCCTAAAGCTGCCAAGGATTCTGTTAAGGACTGGGAGTGCCTCTTCATTTGCAATTTATACTGCATTTCCACTTCTTCGAGAGAAAGGCTACCTCCCAAAACAAGATTCTCGACTAGAAGAGGAAGTGACAGAGCTTTCACCTCTCAAGGTTAAAGACCTTCCAATTATCAACAGTGATGGTCCAGAGAGATTTTTTAATCTAATAGCTGACCTGGAAATTCAAACCAAGACCTCAGATGGATTGATTCTCAATACTTTTGAAGACCTTGAAGAACATGCACTGGCCACTATTCGCCAGGTACGATATTTTATTGTGTTATGGGAACACATTAGTTTGTCTCCTATGAAAATGTTGTTGGGTCGAGTGGAAAGGTTGGTGAGGGCGGCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

254

Amino Acids

28.63

Weight (kDa)

5.83

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	3 cut(s)	204, 224, 755
AclWI	GGATC	3 cut(s)	12, 215, 228
AcoI	YGGCCR	2 cut(s)	81, 654
AcsI	RAATTY	2 cut(s)	253, 588
AfaI	GTAC	1 cut(s)	672
AfiI	CCNNNNNNNGG	1 cut(s)	53
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	6 cut(s)	53, 136, 153, 593, 632, 641
AjnI	CCWGG	3 cut(s)	270, 582, 666
AjuI	GAANNNNNNNTTGG	4 cut(s)	460, 492, 710, 742
AluBI	AGCT	4 cut(s)	79, 379, 505, 578
AluI	AGCT	4 cut(s)	79, 379, 505, 578
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	3 cut(s)	12, 215, 228
AoxI	GGCC	3 cut(s)	55, 81, 654
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	2 cut(s)	253, 588
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	322, 501, 760
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	2 cut(s)	83, 656
BamHI	GGATCC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	3 cut(s)	165, 542, 602
BciT130I	CCWGG	3 cut(s)	272, 584, 668
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	1 cut(s)	485
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	380, 756
BlsI	GCNGC	2 cut(s)	381, 757
Bme1390I	CCNGG	3 cut(s)	272, 584, 668
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	3 cut(s)	208, 222, 312
BmrFI	CCNGG	3 cut(s)	272, 584, 668
BmrI	ACTGGG	1 cut(s)	411
BmuI	ACTGGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	639
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	95, 500
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	406, 657
BseBI	CCWGG	3 cut(s)	272, 584, 668
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	406, 657
BseXI	GCAGC	1 cut(s)	366
BshFI	GGCC	3 cut(s)	57, 83, 656
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	714
BsnI	GGCC	3 cut(s)	57, 83, 656
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	4, 220
BspACI	CCGC	3 cut(s)	204, 224, 755
BspANI	GGCC	3 cut(s)	57, 83, 656
BspCNI	CTCAG	1 cut(s)	617
BspLI	GGNNCC	3 cut(s)	208, 222, 312
BspPI	GGATC	3 cut(s)	12, 215, 228
BspT104I	TTCGAA	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	406, 657
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	2 cut(s)	4, 220
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	3 cut(s)	272, 584, 668
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	3 cut(s)	41, 418, 483
BstAFI	CTTAAG	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	2 cut(s)	7, 223
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	2 cut(s)	4, 220
BstNI	CCWGG	3 cut(s)	272, 584, 668
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	3 cut(s)	270, 582, 666
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	57, 83, 656
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	3 cut(s)	41, 550, 650
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	671
CviAII	CATG	2 cut(s)	70, 647
CviQI	GTAC	1 cut(s)	671
DdeI	CTNAG	1 cut(s)	604
DpnI	GATC	2 cut(s)	6, 222
DpnII	GATC	2 cut(s)	4, 220
EaeI	YGGCCR	2 cut(s)	81, 654
Eam1104I	CTCTTC	3 cut(s)	41, 418, 483
EarI	CTCTTC	3 cut(s)	41, 418, 483
Eco130I	CCWWGG	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	551
EcoRII	CCWGG	3 cut(s)	270, 582, 666
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	2 cut(s)	73, 650
FaiI	YATR	9 cut(s)	60, 62, 71, 119, 345, 429, 648, 691, 716
FatI	CATG	2 cut(s)	69, 646
Fnu4HI	GCNGC	2 cut(s)	380, 756
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	380, 756
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	2 cut(s)	380, 756
HaeIII	GGCC	3 cut(s)	57, 83, 656
Hin1II	CATG	2 cut(s)	73, 650
HinfI	GANTC	4 cut(s)	335, 388, 476, 616
HphI	GGTGA	3 cut(s)	322, 501, 760
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	4 cut(s)	24, 199, 298, 607
Hpy188III	TCNNGA	4 cut(s)	260, 449, 480, 554
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	5 cut(s)	10, 159, 239, 301, 539
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	4 cut(s)	365, 422, 434, 650
HpyF3I	CTNAG	1 cut(s)	604
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	73, 650
Kzo9I	GATC	2 cut(s)	4, 220
LmnI	GCTCC	2 cut(s)	231, 310
Lsp1109I	GCAGC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	2 cut(s)	6, 222
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	2 cut(s)	4, 220
MboII	GAAGA	8 cut(s)	28, 163, 224, 405, 437, 500, 644, 653
MflI	RGATCY	1 cut(s)	220
MlsI	TGGCCA	2 cut(s)	83, 656
MluCI	AATT	4 cut(s)	253, 423, 534, 588
MluNI	TGGCCA	2 cut(s)	83, 656
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	7 cut(s)	220, 421, 473, 484, 522, 613, 744
Mox20I	TGGCCA	2 cut(s)	83, 656
MroXI	GAANNNNTTC	1 cut(s)	104
MscI	TGGCCA	2 cut(s)	83, 656
MseI	TTAA	5 cut(s)	12, 326, 395, 522, 567
Msp20I	TGGCCA	2 cut(s)	83, 656
MspCI	CTTAAG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	272, 584, 668
MvaI	CCWGG	3 cut(s)	272, 584, 668
NdeII	GATC	2 cut(s)	4, 220
NlaIII	CATG	2 cut(s)	73, 650
NlaIV	GGNNCC	3 cut(s)	208, 222, 312
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	650
NspV	TTCGAA	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	3 cut(s)	388, 476, 616
PflFI	GACNNNGTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	381, 757
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	3 cut(s)	270, 582, 666
PspGI	CCWGG	3 cut(s)	270, 582, 666
PspN4I	GGNNCC	3 cut(s)	208, 222, 312
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	220
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	672
RsaNI	GTAC	1 cut(s)	671
SaqAI	TTAA	5 cut(s)	12, 326, 395, 522, 567
SatI	GCNGC	2 cut(s)	380, 756
Sau3AI	GATC	2 cut(s)	4, 220
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	272, 584, 668
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	1 cut(s)	551
SmlI	CTYRAG	3 cut(s)	11, 74, 515
SmoI	CTYRAG	3 cut(s)	11, 74, 515
Sse9I	AATT	4 cut(s)	253, 423, 534, 588
SsiI	CCGC	3 cut(s)	204, 224, 755
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	270, 582, 666
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	5 cut(s)	98, 305, 448, 481, 733
TasI	AATT	4 cut(s)	253, 423, 534, 588
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	3 cut(s)	388, 476, 616
Tru1I	TTAA	5 cut(s)	12, 326, 395, 522, 567
Tru9I	TTAA	5 cut(s)	12, 326, 395, 522, 567
TscAI	CASTG	3 cut(s)	48, 550, 657
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	4 cut(s)	157, 264, 405, 731
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	3 cut(s)	48, 550, 657
Tth111I	GACNNNGTC	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	253, 588
XceI	RCATGY	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.