Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

28849299 .. 28849608

Gene Structure 310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1209300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGATTTGTATGCCATGTTTCAGTGATCAAATGGTTAATGCAAGATATGTGAGCGATGTTTGGAGGGTAGGGTTGCAGTTGGAGCATGGGATTGAGAGAGGTGAGGTTGAAAGAACAATTAGAAGACTAATGGTGGAGGAAGAAGGGGAAGAGATCCAAGACAGAGCTTTAAAGTTGATGGAGGAGGCAAATCTTTGCCTCAAAGAAGATGGCTCTTCATACCAATCTTTAGTTGGCTTGGTTCAACAAGTTTTTTTACATTTTTTTAATAAAGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

94

Amino Acids

10.84

Weight (kDa)

4.76

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	110, 245
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AlwI	GGATC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	130
BccI	CCATC	2 cut(s)	172, 203
BclI	TGATCA	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	25, 153
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	220
BssMI	GATC	2 cut(s)	25, 153
Bst6I	CTCTTC	2 cut(s)	144, 220
BstKTI	GATC	2 cut(s)	28, 156
BstMBI	GATC	2 cut(s)	25, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	28
CviAII	CATG	2 cut(s)	15, 86
CviJI	RGCY	3 cut(s)	167, 213, 237
CviKI_1	RGCY	3 cut(s)	167, 213, 237
DpnI	GATC	2 cut(s)	27, 155
DpnII	GATC	2 cut(s)	25, 153
DraI	TTTAAA	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	144, 220
EarI	CTCTTC	2 cut(s)	144, 220
FaeI	CATG	2 cut(s)	18, 89
FaiI	YATR	5 cut(s)	11, 16, 48, 87, 220
FatI	CATG	2 cut(s)	14, 85
FbaI	TGATCA	1 cut(s)	25
Hin1II	CATG	2 cut(s)	18, 89
HphI	GGTGA	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	41, 76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	18, 89
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	25, 153
LguI	GCTCTTC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	82
MalI	GATC	2 cut(s)	27, 155
MboI	GATC	2 cut(s)	25, 153
MboII	GAAGA	5 cut(s)	135, 152, 161, 207, 218
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	7 cut(s)	57, 92, 97, 130, 175, 178, 209
MseI	TTAA	3 cut(s)	36, 170, 267
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	25, 153
NlaIII	CATG	2 cut(s)	18, 89
PciSI	GCTCTTC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	36, 170, 267
Sau3AI	GATC	2 cut(s)	25, 153
SetI	ASST	3 cut(s)	103, 108, 169
SgeI	CNNG	6 cut(s)	27, 54, 98, 170, 250, 260
Sse9I	AATT	1 cut(s)	117
TasI	AATT	1 cut(s)	117
Tru1I	TTAA	3 cut(s)	36, 170, 267
Tru9I	TTAA	3 cut(s)	36, 170, 267
TscAI	CASTG	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.