Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

25330111 .. 25331661

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1143400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAGCAAAGCAAAGGCAGGAGAGTTATCCTCTTCCCGCTGCCCTTCCAAGGGCACATAAACCCTATGCTAGAACTGGCCAACATTCTGCATGCCAAAGGATTCTCCATAGCCATCATCTCTACCAACTTCAACTCCCTCAACCCTTCAACCCTAAACCCACACTTCACCTACCATTCAATCCCTGTTGACTTGACAGAAAACGAGGCCTCCATGAAGGATCCATTCCTTCTTCTTTCTATTCTAAATGCTAAATGTGTTGAGCCTTTCAGAGAATACTTGTCCGGGTTGTTATCCAAGGACGTTAATTCGGAGGACCCCATTGCATGCTTGATCTCGGATCCTCTCTTCAACTTCACTCGATCGGTTGCGGAAAGCTTTAAGTTGCCGAGGATCGTGTTAAGAACAGGGGGTGCAGCTTCCTTCGCTGTTTATGCTGCATTTCCACAACTCTTATGCTGCATTTCCACAACTCAAGGAAAAGGGTTACCTACCAATACCAGATTCTCGACTAGAAGAGTGACGGAGCTTTCACCTATCAAAGTTAAAGACCTACCTGCAGCGATGCCCAATTGCGACCCTGAAGATTTCTATCAACTGATAACCAACATGGCAAATGAACCCAAGGATTCCCATGGACTCATCTTCAATACGTTTGAAGATCTTGAGGAAAAGCACTTGCCACAATTTGCCAAGAATATTACCCCAATATTCCAATTTTCTCACCAGGTCCATTTCACAAGTGCGGCCCTACAACCTCTTCTTCTTCAACTAGCTTACTATCACAAGACCAAAGTTGCATTTCATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

271

Amino Acids

30.22

Weight (kDa)

6.79

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AciI	CCGC	3 cut(s)	38, 371, 746
AclWI	GGATC	5 cut(s)	215, 228, 335, 348, 401
AcoI	YGGCCR	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	603
AfiI	CCNNNNNNNGG	2 cut(s)	50, 51
AgsI	TTSAA	7 cut(s)	133, 150, 180, 352, 649, 659, 770
AjnI	CCWGG	1 cut(s)	726
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	4 cut(s)	378, 419, 529, 776
AluI	AGCT	4 cut(s)	378, 419, 529, 776
AlwI	GGATC	5 cut(s)	215, 228, 335, 348, 401
AoxI	GGCC	3 cut(s)	78, 207, 747
ApeKI	GCWGC	5 cut(s)	40, 416, 437, 459, 560
AspS9I	GGNCC	3 cut(s)	316, 730, 748
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	3 cut(s)	160, 525, 716
AvaII	GGWCC	2 cut(s)	316, 730
BaeGI	GKGCMC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	80
BamHI	GGATCC	2 cut(s)	220, 340
BbvI	GCAGC	5 cut(s)	27, 424, 428, 446, 572
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	728
BcnI	CCSGG	1 cut(s)	286
BfaI	CTAG	3 cut(s)	71, 513, 773
BfmI	CTRYAG	1 cut(s)	558
BfuAI	ACCTGC	1 cut(s)	565
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	6 cut(s)	41, 417, 438, 460, 561, 747
BlsI	GCNGC	6 cut(s)	42, 418, 439, 461, 562, 748
Bme1390I	CCNGG	2 cut(s)	286, 728
Bme18I	GGWCC	2 cut(s)	316, 730
BmgT120I	GGNCC	3 cut(s)	316, 730, 748
BmiI	GGNNCC	3 cut(s)	222, 318, 342
BmrFI	CCNGG	2 cut(s)	286, 728
BmsI	GCATC	1 cut(s)	555
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
BpuEI	CTTGAG	2 cut(s)	459, 686
BpuMI	CCSGG	1 cut(s)	286
BsaBI	GATNNNNATC	1 cut(s)	591
BsaJI	CCNNGG	5 cut(s)	49, 297, 389, 624, 634
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 51
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	5 cut(s)	49, 297, 389, 624, 634
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	50, 51
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	5 cut(s)	27, 424, 428, 446, 572
BsgI	GTGCAG	1 cut(s)	435
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	3 cut(s)	80, 209, 749
BsiEI	CGRYCG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	50, 51
BsnI	GGCC	3 cut(s)	80, 209, 749
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	6 cut(s)	220, 333, 340, 362, 393, 661
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	3 cut(s)	38, 371, 746
BspANI	GGCC	3 cut(s)	80, 209, 749
BspLI	GGNNCC	3 cut(s)	222, 318, 342
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	5 cut(s)	215, 228, 335, 348, 401
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	5 cut(s)	49, 297, 389, 624, 634
BssMI	GATC	6 cut(s)	220, 333, 340, 362, 393, 661
BssT1I	CCWWGG	4 cut(s)	49, 297, 624, 634
Bst2UI	CCWGG	1 cut(s)	728
Bst6I	CTCTTC	4 cut(s)	38, 353, 511, 765
BstC8I	GCNNGC	2 cut(s)	93, 328
BstDSI	CCRYGG	1 cut(s)	634
BstEII	GGTNACC	1 cut(s)	486
BstKTI	GATC	6 cut(s)	223, 336, 343, 365, 396, 664
BstMBI	GATC	6 cut(s)	220, 333, 340, 362, 393, 661
BstMCI	CGRYCG	1 cut(s)	365
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 434
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	2 cut(s)	95, 330
BstPI	GGTNACC	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	284, 726
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	57
BstV1I	GCAGC	5 cut(s)	27, 424, 428, 446, 572
BstX2I	RGATCY	3 cut(s)	220, 340, 661
BstYI	RGATCY	3 cut(s)	220, 340, 661
BsuRI	GGCC	3 cut(s)	80, 209, 749
BtgI	CCRYGG	1 cut(s)	634
BtgZI	GCGATG	1 cut(s)	578
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	93, 328
Cfr13I	GGNCC	3 cut(s)	316, 730, 748
CsiI	ACCWGGT	1 cut(s)	726
CviAII	CATG	6 cut(s)	92, 214, 327, 610, 635, 806
DpnI	GATC	6 cut(s)	222, 335, 342, 364, 395, 663
DpnII	GATC	6 cut(s)	220, 333, 340, 362, 393, 661
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	4 cut(s)	38, 353, 511, 765
EarI	CTCTTC	4 cut(s)	38, 353, 511, 765
Eco130I	CCWWGG	4 cut(s)	49, 297, 624, 634
Eco147I	AGGCCT	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	316, 730
Eco57I	CTGAAG	1 cut(s)	603
Eco91I	GGTNACC	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	316
EcoO65I	GGTNACC	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	4 cut(s)	49, 297, 624, 634
ErhI	CCWWGG	4 cut(s)	49, 297, 624, 634
FaeI	CATG	6 cut(s)	95, 217, 330, 613, 638, 809
FatI	CATG	6 cut(s)	91, 213, 326, 609, 634, 805
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	6 cut(s)	41, 417, 438, 460, 561, 747
Fsp4HI	GCNGC	6 cut(s)	41, 417, 438, 460, 561, 747
FspBI	CTAG	3 cut(s)	71, 513, 773
GluI	GCNGC	6 cut(s)	41, 417, 438, 460, 561, 747
HaeIII	GGCC	3 cut(s)	80, 209, 749
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	6 cut(s)	95, 217, 330, 613, 638, 809
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	4 cut(s)	102, 504, 629, 639
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	3 cut(s)	160, 525, 716
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	272, 313, 340
Hpy188III	TCNNGA	2 cut(s)	508, 665
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	5 cut(s)	55, 156, 211, 239, 433
HpyCH4IV	ACGT	2 cut(s)	303, 653
HpyCH4V	TGCA	7 cut(s)	91, 326, 416, 440, 462, 560, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 434
HpySE526I	ACGT	2 cut(s)	303, 653
Hsp92II	CATG	6 cut(s)	95, 217, 330, 613, 638, 809
Kzo9I	GATC	6 cut(s)	220, 333, 340, 362, 393, 661
LmnI	GCTCC	2 cut(s)	4, 526
Lsp1109I	GCAGC	5 cut(s)	27, 424, 428, 446, 572
LweI	GCATC	1 cut(s)	555
MabI	ACCWGGT	1 cut(s)	726
MaeI	CTAG	3 cut(s)	71, 513, 773
MaeII	ACGT	2 cut(s)	303, 653
MaeIII	GTNAC	2 cut(s)	486, 520
MalI	GATC	6 cut(s)	222, 335, 342, 364, 395, 663
MboI	GATC	6 cut(s)	220, 333, 340, 362, 393, 661
MfeI	CAATTG	1 cut(s)	571
MflI	RGATCY	3 cut(s)	220, 340, 661
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	4 cut(s)	307, 571, 686, 716
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	633
MnlI	CCTC	9 cut(s)	41, 149, 199, 220, 307, 354, 384, 661, 768
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	4 cut(s)	306, 381, 401, 546
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	286, 728
MunI	CAATTG	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	728
MwoI	GCNNNNNNNGC	2 cut(s)	425, 434
NciI	CCSGG	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	6 cut(s)	220, 333, 340, 362, 393, 661
NlaIII	CATG	6 cut(s)	95, 217, 330, 613, 638, 809
NlaIV	GGNNCC	3 cut(s)	222, 318, 342
NmeAIII	GCCGAG	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	2 cut(s)	95, 330
PaeI	GCATGC	2 cut(s)	95, 330
PceI	AGGCCT	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	102, 504, 629
PkrI	GCNGC	6 cut(s)	42, 418, 439, 461, 562, 748
Ple19I	CGATCG	1 cut(s)	365
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
PpuMI	RGGWCCY	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	726
PspEI	GGTNACC	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	3 cut(s)	222, 318, 342
PspPI	GGNCC	3 cut(s)	316, 730, 748
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	3 cut(s)	220, 340, 661
PvuI	CGATCG	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	306, 381, 401, 546
SatI	GCNGC	6 cut(s)	41, 417, 438, 460, 561, 747
Sau3AI	GATC	6 cut(s)	220, 333, 340, 362, 393, 661
Sau96I	GGNCC	3 cut(s)	316, 730, 748
SchI	GAGTC	1 cut(s)	633
ScrFI	CCNGG	2 cut(s)	286, 728
SduI	GDGCHC	1 cut(s)	57
SexAI	ACCWGGT	1 cut(s)	726
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	2 cut(s)	316, 730
SmlI	CTYRAG	2 cut(s)	474, 665
SmoI	CTYRAG	2 cut(s)	474, 665
SphI	GCATGC	2 cut(s)	95, 330
Sse9I	AATT	4 cut(s)	307, 571, 686, 716
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	3 cut(s)	38, 371, 746
SspI	AATATT	2 cut(s)	700, 711
SspMI	CTAG	3 cut(s)	71, 513, 773
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	284, 726
StyI	CCWWGG	4 cut(s)	49, 297, 624, 634
TaiI	ACGT	2 cut(s)	306, 656
TaqI	TCGA	2 cut(s)	361, 509
TasI	AATT	4 cut(s)	307, 571, 686, 716
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	3 cut(s)	102, 504, 629
Tru1I	TTAA	4 cut(s)	306, 381, 401, 546
Tru9I	TTAA	4 cut(s)	306, 381, 401, 546
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	5 cut(s)	40, 416, 437, 459, 560
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	230, 633, 794
TspGWI	ACGGA	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	316, 730
XceI	RCATGY	2 cut(s)	95, 330
XspI	CTAG	3 cut(s)	71, 513, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.