Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

70061769 .. 70062536

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG438400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGATTTCATATACAAATTTCTTATTGTTCCAGGGATAGAATCATCTATGCATTCCCGCTTGGGGACAATTGCATCAATAAATGAAGCAAAATTTCTGGAGATAGCTTGGGGACTAGCCAACAGCAACCAAACCTTTTTGTGGGTTGTTCGACCCGAAGTAGTATGTAGGTCGGAATGGCTTCAACCACTCCCTAGTGGGTTTCTTGAAACTTTGAATGAGAGAGGACACATTGTAAAATGGGCTCCCCAAAAAGAAGTACTTGCACATTCAGCAGTTGGAGCCTTTTGGACTCACAATGGGTGGAGCTCTACACCGGAGAGTATCTGTGAAGGGATCCCTATGATTTGTATGCCATGTTTCAATGATCAAATGACGATTGCAAGATATGTAAGTGATGTTTGGAAGGTCGGTTTGCAGTTTGAGCATGGGGTTGAGAGAGACGAGATCAAAAGAACGATTAGAAAACTAATGGTGGAGAAAGAAGGGAATGAGATCAGGGATAGGAGCTTGAAGCTAATGGAGAGGAGCTTGAAGCTAATAGAGAAGGCAAGTCATTCCTTGAAAGAAGGTGGCTCCTCAAACCAATCCTTGGATGCCTTGGTCAAACACATTTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

207

Amino Acids

23.54

Weight (kDa)

6.66

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	21 - 161	2e-25	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	592
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	2 cut(s)	331, 344
AcsI	RAATTY	2 cut(s)	17, 92
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	63, 141, 592
AgsI	TTSAA	7 cut(s)	185, 209, 217, 364, 514, 535, 565
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	6 cut(s)	107, 309, 510, 517, 531, 538
AluI	AGCT	6 cut(s)	107, 309, 510, 517, 531, 538
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	331, 344
ApoI	RAATTY	2 cut(s)	17, 92
Asp700I	GAANNNNTTC	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	336
BanII	GRGCYC	2 cut(s)	247, 311
Bbv12I	GWGCWC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	2 cut(s)	116, 195
BmcAI	AGTACT	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	33
BmiI	GGNNCC	4 cut(s)	246, 283, 338, 577
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	83, 586
BpmI	CTGGAG	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	32, 591, 600
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 141, 592
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	32, 591, 600
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	3 cut(s)	63, 141, 592
BseRI	GAGGAG	2 cut(s)	541, 568
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	79, 126
BslI	CCNNNNNNNGG	3 cut(s)	63, 141, 592
BsmAI	GTCTC	1 cut(s)	435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	2 cut(s)	79, 126
BsmI	GAATGC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	247, 311
Bsp143I	GATC	4 cut(s)	336, 367, 447, 495
BspACI	CCGC	1 cut(s)	58
BspLI	GGNNCC	4 cut(s)	246, 283, 338, 577
BspPI	GGATC	2 cut(s)	331, 344
BssECI	CCNNGG	3 cut(s)	32, 591, 600
BssMI	GATC	4 cut(s)	336, 367, 447, 495
BssT1I	CCWWGG	2 cut(s)	591, 600
Bst2UI	CCWGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	4 cut(s)	339, 370, 450, 498
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	4 cut(s)	336, 367, 447, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 281, 424
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	2 cut(s)	357, 428
CviQI	GTAC	1 cut(s)	260
DpnI	GATC	4 cut(s)	338, 369, 449, 497
DpnII	GATC	4 cut(s)	336, 367, 447, 495
Ecl136II	GAGCTC	1 cut(s)	309
Eco130I	CCWWGG	2 cut(s)	591, 600
Eco24I	GRGCYC	2 cut(s)	247, 311
Eco53kI	GAGCTC	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	591, 600
EcoT22I	ATGCAT	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	247, 311
ErhI	CCWWGG	2 cut(s)	591, 600
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	2 cut(s)	360, 431
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	2 cut(s)	79, 126
FatI	CATG	2 cut(s)	356, 427
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	367
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	2 cut(s)	247, 311
FspBI	CTAG	2 cut(s)	116, 195
GsuI	CTGGAG	1 cut(s)	119
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	2 cut(s)	360, 431
HinfI	GANTC	2 cut(s)	41, 292
HpaII	CCGG	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	98, 206
HpyAV	CCTTC	5 cut(s)	326, 400, 479, 541, 563
HpyCH4V	TGCA	5 cut(s)	52, 74, 266, 383, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 281, 424
Hsp92II	CATG	2 cut(s)	360, 431
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	336, 367, 447, 495
LmnI	GCTCC	6 cut(s)	250, 281, 306, 507, 528, 581
LpnPI	CCDG	5 cut(s)	18, 45, 83, 330, 484
LweI	GCATC	2 cut(s)	83, 586
MaeI	CTAG	2 cut(s)	116, 195
MalI	GATC	4 cut(s)	338, 369, 449, 497
MboI	GATC	4 cut(s)	336, 367, 447, 495
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	247, 311
MluCI	AATT	3 cut(s)	17, 69, 92
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	153, 259
MnlI	CCTC	3 cut(s)	218, 519, 589
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	180
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	272, 281, 424
NdeII	GATC	4 cut(s)	336, 367, 447, 495
NlaIII	CATG	2 cut(s)	360, 431
NlaIV	GGNNCC	4 cut(s)	246, 283, 338, 577
NsiI	ATGCAT	1 cut(s)	54
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	592
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	4 cut(s)	246, 283, 338, 577
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	311
Sau3AI	GATC	4 cut(s)	336, 367, 447, 495
ScaI	AGTACT	1 cut(s)	261
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	247, 311
SfaNI	GCATC	2 cut(s)	83, 586
Sse9I	AATT	3 cut(s)	17, 69, 92
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	2 cut(s)	116, 195
SstI	GAGCTC	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	2 cut(s)	591, 600
TaqI	TCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	17, 69, 92
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	592
XapI	RAATTY	2 cut(s)	17, 92
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	2 cut(s)	116, 195
ZrmI	AGTACT	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.