Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

5883357 .. 5884958

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGACTTCCTATGCTATTTTTACTCAATTTCCACTACTAAAAGAAAAAGGCTACATTCCGGTCACGCAAGATTCTCAACTAGAAAAGGTGGTGACGGAGCTTCCACCTCTCAGAATCAAAGACCTTCCGGTGTTCCCAAAGGGCGACCCGGAGAAACATTTTGAACTATGTGTAGTTATTGTGACCAAAGTTACAGCCTCTGATGGAGTCATTTTTAACACTTTTAGAGATCTTGAAGAACAAGGACTGGCAACATTGCACAAACAATTCCCTAATCTTCCAGTTTTCCCAATAGGCCCATTCCACAAGTGCGTCCCTGAGGAAGCCTCTTCTTCAACTAGTGACCAAAGTTGCATTTCTTGGCTAAACACTCAAGCACCAAACTCTGTTATTTATGTTAGCTTTGGGACCATTGCAGCAATATCCAAGATGCAGTTTTTGGAGATAGCTTGGGGATTAGCCAACAGCCACCAACCTTTCTTGGGTCACATTGTGAAACGGGCACCCCAAAAAGAAGTGTTGGCACATCCATCAGTTAGAGCTTTTTGGACTCACAATGGTTGGAATTCTACATTGGAGAGTGTGTCTGAAGGTGTCCCTATGATTTGTATGCCTTGTTTCAGTGATCAACTGGTGCTTGCAAGGTATGTAAGTAAGGTTTGGAAAATTGGGTTGCAGTTTGAGAATGGAACTGAGAGAGGTGAAATTGAAGAAACAATTAGAAAACTAATGGAGGAGAAAGAAGGAGAAGACATCAGAGACAGAAGTTTGAAGCTAATGGAGAAGGCAAATGTTTCCTTCAAACCAGGTGGATCTTCATACCAATGCTTGGATGGCTTGGTCAAACATATTTTATCATTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

288

Amino Acids

32.36

Weight (kDa)

5.95

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	117 - 247	5.4e-21	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	502
AccB7I	CCANNNNNTGG	1 cut(s)	829
AclWI	GGATC	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	609
AdeI	CACNNNGTG	1 cut(s)	493
AfiI	CCNNNNNNNGG	2 cut(s)	482, 829
AgsI	TTSAA	7 cut(s)	164, 236, 336, 710, 772, 802, 863
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	5 cut(s)	100, 402, 449, 542, 775
AluI	AGCT	5 cut(s)	100, 402, 449, 542, 775
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	1 cut(s)	820
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	296, 408
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	103, 713
AvaII	GGWCC	1 cut(s)	408
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	756
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	3 cut(s)	197, 538, 827
BciT130I	CCWGG	1 cut(s)	807
BclI	TGATCA	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	753
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	2 cut(s)	80, 339
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	2 cut(s)	149, 807
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	296, 408
BmiI	GGNNCC	2 cut(s)	409, 504
BmrFI	CCNGG	2 cut(s)	149, 807
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	756
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpuEI	CTTGAG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	149
BsaWI	WCCGGW	2 cut(s)	58, 127
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 829
Bse1I	ACTGG	3 cut(s)	252, 281, 636
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	2 cut(s)	254, 411
BseBI	CCWGG	1 cut(s)	807
BseGI	GGATG	2 cut(s)	526, 838
BseLI	CCNNNNNNNGG	2 cut(s)	482, 829
BseMI	GCAATG	2 cut(s)	254, 411
BseMII	CTCAG	3 cut(s)	124, 309, 684
BseNI	ACTGG	3 cut(s)	252, 281, 636
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	428
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	502
BsiSI	CCGG	3 cut(s)	59, 128, 149
BslFI	GGGAC	3 cut(s)	299, 421, 581
BslI	CCNNNNNNNGG	2 cut(s)	482, 829
BsmAI	GTCTC	1 cut(s)	753
BsmFI	GGGAC	3 cut(s)	299, 421, 581
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	229, 625, 812
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	3 cut(s)	123, 310, 685
BspLI	GGNNCC	2 cut(s)	409, 504
BspPI	GGATC	1 cut(s)	820
BspT107I	GGYRCC	1 cut(s)	502
BsrDI	GCAATG	2 cut(s)	254, 411
BsrI	ACTGG	3 cut(s)	252, 281, 636
BssMI	GATC	3 cut(s)	229, 625, 812
Bst2UI	CCWGG	1 cut(s)	807
Bst6I	CTCTTC	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	3 cut(s)	110, 318, 693
BstF5I	GGATG	2 cut(s)	526, 838
BstKTI	GATC	3 cut(s)	232, 628, 815
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	3 cut(s)	229, 625, 812
BstMWI	GCNNNNNNNGC	1 cut(s)	834
BstNI	CCWGG	1 cut(s)	807
BstSCI	CCNGG	2 cut(s)	147, 805
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	2 cut(s)	229, 812
BstYI	RGATCY	2 cut(s)	229, 812
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	526, 838
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	296, 408
CseI	GACGC	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	805
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
DdeI	CTNAG	3 cut(s)	110, 318, 693
DpnI	GATC	3 cut(s)	231, 627, 814
DpnII	GATC	3 cut(s)	229, 625, 812
DraIII	CACNNNGTG	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	805
FaiI	YATR	8 cut(s)	12, 169, 396, 602, 611, 648, 820, 849
FaqI	GGGAC	3 cut(s)	299, 421, 581
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	2 cut(s)	513, 845
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	2 cut(s)	80, 339
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	3 cut(s)	59, 128, 149
HgaI	GACGC	1 cut(s)	301
HinfI	GANTC	4 cut(s)	71, 114, 207, 550
HpaII	CCGG	3 cut(s)	59, 128, 149
HphI	GGTGA	2 cut(s)	103, 713
Hpy188I	TCNGA	4 cut(s)	113, 202, 589, 758
Hpy188III	TCNNGA	1 cut(s)	233
HpyAV	CCTTC	5 cut(s)	134, 584, 737, 778, 808
HpyCH4V	TGCA	6 cut(s)	259, 354, 416, 433, 641, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	834
HpyF3I	CTNAG	3 cut(s)	110, 318, 693
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	229, 625, 812
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	9 cut(s)	72, 141, 162, 233, 294, 330, 617, 792, 819
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	1 cut(s)	420
MabI	ACCWGGT	1 cut(s)	805
MaeI	CTAG	2 cut(s)	80, 339
MaeIII	GTNAC	6 cut(s)	61, 91, 181, 190, 341, 485
MalI	GATC	3 cut(s)	231, 627, 814
MboI	GATC	3 cut(s)	229, 625, 812
MboII	GAAGA	7 cut(s)	248, 269, 321, 324, 722, 761, 807
MflI	RGATCY	2 cut(s)	229, 812
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	6 cut(s)	26, 266, 565, 666, 705, 717
MlyI	GAGTC	2 cut(s)	216, 544
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	6 cut(s)	117, 208, 313, 337, 692, 727
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	823
MspI	CCGG	3 cut(s)	59, 128, 149
MspR9I	CCNGG	2 cut(s)	149, 807
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	1 cut(s)	834
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	229, 625, 812
NlaIV	GGNNCC	2 cut(s)	409, 504
NmuCI	GTSAC	5 cut(s)	61, 91, 181, 341, 485
PfeI	GAWTC	2 cut(s)	71, 114
PflMI	CCANNNNNTGG	1 cut(s)	829
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	2 cut(s)	215, 544
PpsI	GAGTC	2 cut(s)	215, 544
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	2 cut(s)	409, 504
PspPI	GGNCC	2 cut(s)	296, 408
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	229, 812
RseI	CAYNNNNRTG	1 cut(s)	823
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	3 cut(s)	229, 625, 812
Sau96I	GGNCC	2 cut(s)	296, 408
SchI	GAGTC	2 cut(s)	216, 544
ScrFI	CCNGG	2 cut(s)	149, 807
SduI	GDGCHC	1 cut(s)	505
SexAI	ACCWGGT	1 cut(s)	805
SfaNI	GCATC	1 cut(s)	420
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	823
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	6 cut(s)	26, 266, 565, 666, 705, 717
SspMI	CTAG	2 cut(s)	80, 339
StyD4I	CCNGG	2 cut(s)	147, 805
TasI	AATT	6 cut(s)	26, 266, 565, 666, 705, 717
TfiI	GAWTC	2 cut(s)	71, 114
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	5 cut(s)	61, 91, 181, 341, 485
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	5 cut(s)	61, 91, 181, 341, 485
TspDTI	ATGAA	1 cut(s)	807
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	628
Van91I	CCANNNNNTGG	1 cut(s)	829
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	830
XspI	CTAG	2 cut(s)	80, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.