Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

5373566 .. 5374599

Gene Structure 1034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCCCAGATTTAGTGCACATGTTTCTAAATCCACAAGGACCTCAAATACAGTGGTGACGGAGCTTCCACCTCTCAGAATCAAAGACCTTCCGGTGTTCCCAAAGGGCGACCCGGAGAAACATTTTGAACTATGTGTAGTTATTGTGGCCAAAGTTGCAGCCTCTGATGGAGTCATTTTTAACACTTTTAGAGATCTTGAAGAACAAGGACTGGCAACATTGCACAAACAATTCCCTAATCTTCCATTTTTCCCAATAGGCCCATTCCACAAGTGTGTCCCTGAGGAAGCCTCTTCTTCAACTAGTGATCAAAGTTGCATTTCTTGGCTAAACACTCAAGCACCAAACTCTGTTATTTATGTTAGTTTTGGGACCATTGCAGCAATATCCAAGACGCAGTTTTTGGAGATAGCTTGGGGATTAGCCAACAGCCACCAACCTTTCTTGTGGGTGGTTCGACCTGGCTTAGTCCATGGGTCAGACTGGCTTGAATCATTGCCTACTGGATTTCTTGAGAATTTGAATGAGAGGGGTCACATTGTGAAATGGGCACCCCAAAAAGAAGTGTTGGCACATCCATCAGTTGGAGCTTTTTGGACTCACAATGGTTGGAATTCTACATTGGAGAGTGTGTGTGAAGGTGTCCCTATGATTTGTATGCCTTGTTTCAGTGATCAACTGGTGCTTGCAAGGTACGTAAGTAAGGTTTGGAAAATTGGGTTGCAGTTTGAGAATGGAACTGAGAGAGGTGAAATTGAAGAAACAATTAGAAAACTAATGGAGGAGAAAGAAGGAGAAGACATCAGAGACAGAAGTTTGAAGCTAATGGAGAAGGCAAATGTTTCCTTCAAACCAGGTGGATCTTCATACCAATGCTTGGATGGCTTGGTCAAACATATTTTATCATTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

304

Amino Acids

34.0

Weight (kDa)

5.95

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	105 - 263	4.4e-29	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AccB7I	CCANNNNNTGG	2 cut(s)	584, 877
AclWI	GGATC	1 cut(s)	868
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	517, 613
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	2 cut(s)	584, 877
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	9 cut(s)	128, 200, 300, 491, 523, 758, 820, 850, 911
AhlI	ACTAGT	1 cut(s)	302
AjnI	CCWGG	2 cut(s)	460, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	4 cut(s)	64, 413, 590, 823
AluI	AGCT	4 cut(s)	64, 413, 590, 823
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	801
Alw44I	GTGCAC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	868
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	147, 259
ApaLI	GTGCAC	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	158, 380
ApoI	RAATTY	2 cut(s)	517, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	385, 417
AspS9I	GGNCC	3 cut(s)	39, 260, 372
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	67, 761
AvaII	GGWCC	2 cut(s)	39, 372
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	2 cut(s)	19, 553
BaeI	ACNNNNGTAYC	2 cut(s)	685, 718
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	170, 392
BccI	CCATC	3 cut(s)	161, 586, 875
BciT130I	CCWGG	2 cut(s)	462, 855
BclI	TGATCA	2 cut(s)	307, 673
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	801
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	1 cut(s)	303
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	159, 381
BlsI	GCNGC	2 cut(s)	160, 382
Bme1390I	CCNGG	3 cut(s)	113, 462, 855
Bme18I	GGWCC	2 cut(s)	39, 372
BmgT120I	GGNCC	3 cut(s)	39, 260, 372
BmiI	GGNNCC	2 cut(s)	373, 552
BmrFI	CCNGG	3 cut(s)	113, 462, 855
BpiI	GAAGAC	1 cut(s)	804
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpuEI	CTTGAG	2 cut(s)	321, 533
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	472
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 877
Bse1I	ACTGG	4 cut(s)	216, 488, 508, 684
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	3 cut(s)	218, 375, 494
BseBI	CCWGG	2 cut(s)	462, 855
BseDI	CCNNGG	1 cut(s)	472
BseGI	GGATG	2 cut(s)	574, 886
BseLI	CCNNNNNNNGG	2 cut(s)	584, 877
BseMI	GCAATG	3 cut(s)	218, 375, 494
BseMII	CTCAG	3 cut(s)	88, 273, 732
BseNI	ACTGG	4 cut(s)	216, 488, 508, 684
BseRI	GAGGAG	1 cut(s)	797
BseSI	GKGCMC	2 cut(s)	19, 553
BseXI	GCAGC	2 cut(s)	170, 392
BshFI	GGCC	2 cut(s)	149, 261
BshNI	GGYRCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	92, 113
BslFI	GGGAC	3 cut(s)	263, 385, 629
BslI	CCNNNNNNNGG	2 cut(s)	584, 877
BsmAI	GTCTC	1 cut(s)	801
BsmFI	GGGAC	3 cut(s)	263, 385, 629
BsnI	GGCC	2 cut(s)	149, 261
Bsp1286I	GDGCHC	2 cut(s)	19, 553
Bsp143I	GATC	4 cut(s)	193, 307, 673, 860
Bsp19I	CCATGG	1 cut(s)	472
BspANI	GGCC	2 cut(s)	149, 261
BspCNI	CTCAG	3 cut(s)	87, 274, 733
BspLI	GGNNCC	2 cut(s)	373, 552
BspPI	GGATC	1 cut(s)	868
BspT107I	GGYRCC	1 cut(s)	550
BsrDI	GCAATG	3 cut(s)	218, 375, 494
BsrI	ACTGG	4 cut(s)	216, 488, 508, 684
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	4 cut(s)	193, 307, 673, 860
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	462, 855
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	4 cut(s)	74, 282, 466, 741
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	2 cut(s)	574, 886
BstKTI	GATC	4 cut(s)	196, 310, 676, 863
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	4 cut(s)	193, 307, 673, 860
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 882
BstNI	CCWGG	2 cut(s)	462, 855
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	3 cut(s)	111, 460, 853
BstSLI	GKGCMC	2 cut(s)	19, 553
BstSNI	TACGTA	1 cut(s)	697
BstV1I	GCAGC	2 cut(s)	170, 392
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	193, 860
BstYI	RGATCY	2 cut(s)	193, 860
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	149, 261
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	574, 886
BtsIMutI	CAGTG	2 cut(s)	57, 676
Cac8I	GCNNGC	1 cut(s)	687
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	39, 260, 372
CseI	GACGC	1 cut(s)	403
CsiI	ACCWGGT	1 cut(s)	853
Csp6I	GTAC	1 cut(s)	694
CspCI	CAANNNNNGTGG	4 cut(s)	33, 68, 838, 873
CviAII	CATG	2 cut(s)	20, 473
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	4 cut(s)	74, 282, 466, 741
DpnI	GATC	4 cut(s)	195, 309, 675, 862
DpnII	GATC	4 cut(s)	193, 307, 673, 860
DraIII	CACNNNGTG	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Eco105I	TACGTA	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	39, 372
Eco81I	CCTNAGG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	460, 853
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	2 cut(s)	23, 476
FaiI	YATR	8 cut(s)	21, 133, 360, 474, 650, 659, 868, 897
FaqI	GGGAC	3 cut(s)	263, 385, 629
FatI	CATG	2 cut(s)	19, 472
FbaI	TGATCA	2 cut(s)	307, 673
Fnu4HI	GCNGC	2 cut(s)	159, 381
FokI	GGATG	2 cut(s)	561, 893
Fsp4HI	GCNGC	2 cut(s)	159, 381
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	2 cut(s)	159, 381
HaeIII	GGCC	2 cut(s)	149, 261
HapII	CCGG	2 cut(s)	92, 113
HgaI	GACGC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	23, 476
HinfI	GANTC	4 cut(s)	78, 171, 491, 598
HpaII	CCGG	2 cut(s)	92, 113
HphI	GGTGA	2 cut(s)	67, 761
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	77, 166, 481, 806
Hpy188III	TCNNGA	2 cut(s)	197, 512
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	5 cut(s)	98, 632, 785, 826, 856
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	7 cut(s)	17, 158, 223, 318, 380, 689, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 882
HpyF3I	CTNAG	4 cut(s)	74, 282, 466, 741
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	2 cut(s)	23, 476
Ksp22I	TGATCA	2 cut(s)	307, 673
Kzo9I	GATC	4 cut(s)	193, 307, 673, 860
LmnI	GCTCC	2 cut(s)	61, 587
Lsp1109I	GCAGC	2 cut(s)	170, 392
MabI	ACCWGGT	1 cut(s)	853
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	55, 533
MalI	GATC	4 cut(s)	195, 309, 675, 862
MboI	GATC	4 cut(s)	193, 307, 673, 860
MboII	GAAGA	7 cut(s)	212, 233, 285, 288, 770, 809, 855
MflI	RGATCY	2 cut(s)	193, 860
MhlI	GDGCHC	2 cut(s)	19, 553
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	6 cut(s)	230, 517, 613, 714, 753, 765
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	180, 592
MmeI	TCCRAC	2 cut(s)	565, 590
MnlI	CCTC	8 cut(s)	52, 81, 172, 277, 301, 522, 740, 775
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	2 cut(s)	273, 871
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	2 cut(s)	92, 113
MspR9I	CCNGG	3 cut(s)	113, 462, 855
MvaI	CCWGG	2 cut(s)	462, 855
MwoI	GCNNNNNNNGC	2 cut(s)	155, 882
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	4 cut(s)	193, 307, 673, 860
NlaIII	CATG	2 cut(s)	23, 476
NlaIV	GGNNCC	2 cut(s)	373, 552
NmuCI	GTSAC	2 cut(s)	55, 533
NspI	RCATGY	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	273
PciI	ACATGT	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	78, 491
PflMI	CCANNNNNTGG	2 cut(s)	584, 877
PkrI	GCNGC	2 cut(s)	160, 382
PleI	GAGTC	2 cut(s)	179, 592
PpsI	GAGTC	2 cut(s)	179, 592
Ppu21I	YACGTR	1 cut(s)	697
PpuMI	RGGWCCY	1 cut(s)	39
PscI	ACATGT	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	460, 853
PspGI	CCWGG	2 cut(s)	460, 853
PspN4I	GGNNCC	2 cut(s)	373, 552
PspPI	GGNCC	3 cut(s)	39, 260, 372
PspPPI	RGGWCCY	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	193, 860
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
RseI	CAYNNNNRTG	2 cut(s)	273, 871
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	159, 381
Sau3AI	GATC	4 cut(s)	193, 307, 673, 860
Sau96I	GGNCC	3 cut(s)	39, 260, 372
SchI	GAGTC	2 cut(s)	180, 592
ScrFI	CCNGG	3 cut(s)	113, 462, 855
SduI	GDGCHC	2 cut(s)	19, 553
SexAI	ACCWGGT	1 cut(s)	853
SinI	GGWCC	2 cut(s)	39, 372
SmiMI	CAYNNNNRTG	2 cut(s)	273, 871
SmlI	CTYRAG	2 cut(s)	336, 512
SmoI	CTYRAG	2 cut(s)	336, 512
SnaBI	TACGTA	1 cut(s)	697
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	6 cut(s)	230, 517, 613, 714, 753, 765
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	111, 460, 853
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	1 cut(s)	457
TasI	AATT	6 cut(s)	230, 517, 613, 714, 753, 765
TfiI	GAWTC	2 cut(s)	78, 491
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	57, 676
TseFI	GTSAC	2 cut(s)	55, 533
TseI	GCWGC	2 cut(s)	158, 380
Tsp45I	GTSAC	2 cut(s)	55, 533
TspDTI	ATGAA	1 cut(s)	855
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	57, 676
Van91I	CCANNNNNTGG	2 cut(s)	584, 877
VneI	GTGCAC	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	39, 372
XapI	RAATTY	2 cut(s)	517, 613
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	878
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.