Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

45069831 .. 45086876

Gene Structure 17046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG316900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGCAAAGGAAGGGCCGGAGATTGATACTCTTCCCACTGCCCTTTCAAGGTCATATAAACCCCATGCTAGAGCTGGCCAACATTTTACACCTGAAAGGCTTCTCCATAACCATCATTCACACCAACTTCAACTCTCTCAACCCTTCAAGCCATCCACACTTCACCTTTCACTCAATTCCTGATGGCTTATCTGAAAGTGAGGCCTCCACAAAGGATATCATCTTCCTCGTTTCTGTTCTAAATGTTAAATGTGTCGAACCTTTCCGAGAATGCTTGGCTAGCTTGTTATCTGATGTTTCAGAGGAGCCTGTTGCTTGTTTGATATCAGACGCTTTCTTTCACTTCGCTCAGTCTGTTGCCGACAGCCTTAAGGTCCCGAGGGTTGTTTTAAGGACTGGGGGTGCTTCTTCATTTACTGTTTTTGCTGCATTTCCACTTCTGCGTGAAAAGGGCTACATCCCAATACAAGCTGATGTATTCAGGTCAGTTGAACCTTCATTTGGTATGAGGTTTGTCTCCTATGAAAATGTTGTTGGGTTGAGTGGAAAGGTTGGTGAGGGCGGCTGTGTGAGGACGTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

195

Amino Acids

21.45

Weight (kDa)

6.65

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	581
AciI	CCGC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	578
AfiI	CCNNNNNNNGG	2 cut(s)	50, 503
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	50, 133, 150, 494
AjuI	GAANNNNNNNTTGG	4 cut(s)	486, 518, 519, 551
AluBI	AGCT	3 cut(s)	76, 285, 473
AluI	AGCT	3 cut(s)	76, 285, 473
Alw26I	GTCTC	1 cut(s)	523
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	3 cut(s)	16, 78, 204
ApeKI	GCWGC	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	16, 376
AsuHPI	GGTGA	2 cut(s)	157, 569
AsuNHI	GCTAGC	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	3 cut(s)	122, 162, 179
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	2 cut(s)	71, 282
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	2 cut(s)	429, 565
BlsI	GCNGC	2 cut(s)	430, 566
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	16, 376
BmiI	GGNNCC	2 cut(s)	309, 378
BmrI	ACTGGG	1 cut(s)	408
BmtI	GCTAGC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 503
Bse1I	ACTGG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	2 cut(s)	154, 459
BseLI	CCNNNNNNNGG	2 cut(s)	50, 503
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	18, 80, 206
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	50, 503
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	18, 80, 206
BsoBI	CYCGRG	1 cut(s)	379
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	3 cut(s)	18, 80, 206
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	309, 378
BspOI	GCTAGC	1 cut(s)	285
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	380
BssNI	GRCGYC	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	578
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	78, 283
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	154, 459
BstMAI	GTCTC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	18, 80, 206
BtsCI	GGATG	2 cut(s)	154, 459
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	78, 283
Cfr13I	GGNCC	2 cut(s)	16, 376
CseI	GACGC	1 cut(s)	341
CviAII	CATG	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	206
Eco32I	GATATC	2 cut(s)	220, 327
Eco47I	GGWCC	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRV	GATATC	2 cut(s)	220, 327
FaeI	CATG	1 cut(s)	70
FaiI	YATR	6 cut(s)	57, 59, 68, 110, 509, 525
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	429, 565
FokI	GGATG	2 cut(s)	141, 446
Fsp4HI	GCNGC	2 cut(s)	429, 565
FspBI	CTAG	2 cut(s)	71, 282
GluI	GCNGC	2 cut(s)	429, 565
HaeIII	GGCC	3 cut(s)	18, 80, 206
HapII	CCGG	1 cut(s)	19
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	1 cut(s)	70
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	2 cut(s)	157, 569
Hpy188I	TCNGA	5 cut(s)	196, 269, 295, 304, 331
Hpy188III	TCNNGA	2 cut(s)	182, 379
HpyAV	CCTTC	3 cut(s)	7, 156, 507
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	578
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	4, 307
LpnPI	CCDG	7 cut(s)	32, 62, 107, 195, 324, 384, 469
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	71, 282
MaeII	ACGT	1 cut(s)	578
MboII	GAAGA	3 cut(s)	25, 217, 402
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	80
MnlI	CCTC	8 cut(s)	196, 217, 239, 298, 375, 504, 553, 567
Mox20I	TGGCCA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	3 cut(s)	249, 372, 392
Msp20I	TGGCCA	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	282
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	309, 378
PceI	AGGCCT	1 cut(s)	206
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	430, 566
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	309, 378
PspPI	GGNCC	2 cut(s)	16, 376
PspPPI	RGGWCCY	1 cut(s)	376
SaqAI	TTAA	3 cut(s)	249, 372, 392
SatI	GCNGC	2 cut(s)	429, 565
Sau96I	GGNCC	2 cut(s)	16, 376
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	177
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	564
SspMI	CTAG	2 cut(s)	71, 282
StuI	AGGCCT	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	258
TasI	AATT	1 cut(s)	177
TauI	GCSGC	1 cut(s)	567
Tru1I	TTAA	3 cut(s)	249, 372, 392
Tru9I	TTAA	3 cut(s)	249, 372, 392
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	402, 489, 540
TspRI	CASTG	1 cut(s)	45
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	71, 282
ZraI	GACGTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.