Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

60516326 .. 60518684

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG331100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGTCCTTGTAAACTTCGAATGGAGCAGAGGAAAGGCCGGAGGTTGATACTCTTCCCATTTCCCTTGCAAGGCCATATAAACCCTATGCTTGAGCTGGCCAACATTCTACACTTCAAAGGCTTCTCCATAACAATCATCCATACAAACTTCAACTCTCTCAACCCTTCAACCCATCCACAGTTCACCTTCCACTCAATCTCAGATGACTTATCTGAAAGCGAGGCTGCTGAAGAGGATCTTCTCCTTCTTCTTTCTCATCTCAACGCAAAGTGCAGTGAACCTTTCCGGGAATGCTTGGCCACCTTGTTGTCTAGTGTAACAGAGGAGCCTGTTGCTTGCTTGATCTGTGACCCACTCTTTGACTTCACTCAGTCTGTTGCTGAGAGCCTTAAGCTCCCATGGATTCTGCTAAGGACCAGTGGTGCTTCTTCCACTGCTGTCTATTCTGCATTTCCACTCCTGCGGGAAAAGGGTTACATTCCAAAGCAAGACTCTCGACTGGAAGAGACGGTGACAGAGCTTTCACCTGTCAAAGTTAAAGATCTTCCGATGATCCACAGTTCCGACCCAGAGAGATTTTTTAAACTAGTACGCTCCATTACATATGAAACCAAGGACTCATATGGATATATCTTTAACACTTTTGAAGACCTTGAACAAGATGCACTGGCCACAATTCGCAAGAAATTTCACATTCCAGTTTTCCCAAATAGGTCCATTTCACAAGTGTGTCCCAGCAACCACTTCTGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

252

Amino Acids

28.7

Weight (kDa)

6.14

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	466
AclWI	GGATC	2 cut(s)	246, 550
AcoI	YGGCCR	3 cut(s)	99, 300, 672
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	5 cut(s)	118, 154, 171, 650, 659
AhlI	ACTAGT	1 cut(s)	589
AleI	CACNNNNGTG	1 cut(s)	730
AluBI	AGCT	3 cut(s)	97, 397, 523
AluI	AGCT	3 cut(s)	97, 397, 523
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	2 cut(s)	246, 550
AoxI	GGCC	5 cut(s)	37, 73, 99, 300, 672
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AspS9I	GGNCC	2 cut(s)	417, 717
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	3 cut(s)	178, 519, 526
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	417, 717
BalI	TGGCCA	3 cut(s)	101, 302, 674
BbsI	GAAGAC	1 cut(s)	657
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	183
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	503
BcuI	ACTAGT	1 cut(s)	589
BfaI	CTAG	2 cut(s)	315, 590
BfrI	CTTAAG	1 cut(s)	392
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	417, 717
BmgT120I	GGNCC	2 cut(s)	417, 717
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	413
Bpu14I	TTCGAA	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	401, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	4 cut(s)	420, 507, 675, 701
BseDI	CCNNGG	2 cut(s)	401, 615
BseGI	GGATG	2 cut(s)	138, 175
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	3 cut(s)	216, 375, 386
BseNI	ACTGG	4 cut(s)	420, 507, 675, 701
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	737
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	5 cut(s)	39, 75, 101, 302, 674
BsiSI	CCGG	2 cut(s)	40, 289
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	503
BsmBI	CGTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	5 cut(s)	39, 75, 101, 302, 674
Bsp119I	TTCGAA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	238, 345, 544, 555
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	5 cut(s)	39, 75, 101, 302, 674
BspCNI	CTCAG	3 cut(s)	215, 376, 385
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	246, 550
BspT104I	TTCGAA	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	392
BsrI	ACTGG	4 cut(s)	420, 507, 675, 701
BssECI	CCNNGG	2 cut(s)	401, 615
BssMI	GATC	4 cut(s)	238, 345, 544, 555
BssT1I	CCWWGG	2 cut(s)	401, 615
Bst4CI	ACNGT	3 cut(s)	183, 514, 563
Bst6I	CTCTTC	3 cut(s)	59, 228, 501
BstAFI	CTTAAG	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	99, 340
BstDEI	CTNAG	4 cut(s)	202, 372, 384, 413
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	138, 175
BstKTI	GATC	4 cut(s)	241, 348, 547, 558
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	4 cut(s)	238, 345, 544, 555
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	2 cut(s)	238, 544
BstYI	RGATCY	2 cut(s)	238, 544
BsuRI	GGCC	5 cut(s)	39, 75, 101, 302, 674
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	138, 175
BtsI	GCAGTG	2 cut(s)	283, 435
BtsIMutI	CAGTG	4 cut(s)	283, 427, 435, 668
Cac8I	GCNNGC	2 cut(s)	99, 340
Cfr13I	GGNCC	2 cut(s)	417, 717
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	1 cut(s)	402
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	4 cut(s)	202, 372, 384, 413
DpnI	GATC	4 cut(s)	240, 347, 546, 557
DpnII	GATC	4 cut(s)	238, 345, 544, 555
DraI	TTTAAA	1 cut(s)	586
EaeI	YGGCCR	3 cut(s)	99, 300, 672
Eam1104I	CTCTTC	3 cut(s)	59, 228, 501
EarI	CTCTTC	3 cut(s)	59, 228, 501
Eco130I	CCWWGG	2 cut(s)	401, 615
Eco47I	GGWCC	2 cut(s)	417, 717
Eco57I	CTGAAG	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	401, 615
ErhI	CCWWGG	2 cut(s)	401, 615
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	1 cut(s)	405
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	1 cut(s)	401
FauI	CCCGC	1 cut(s)	459
FauNDI	CATATG	2 cut(s)	607, 625
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	125, 162
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	315, 590
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	1 cut(s)	741
HaeIII	GGCC	5 cut(s)	39, 75, 101, 302, 674
HapII	CCGG	2 cut(s)	40, 289
Hin1II	CATG	1 cut(s)	405
HinfI	GANTC	4 cut(s)	4, 406, 494, 620
HpaII	CCGG	2 cut(s)	40, 289
HphI	GGTGA	3 cut(s)	178, 519, 526
Hpy166II	GTNNAC	3 cut(s)	14, 186, 281
Hpy188I	TCNGA	4 cut(s)	205, 217, 552, 568
Hpy188III	TCNNGA	1 cut(s)	498
Hpy8I	GTNNAC	3 cut(s)	14, 186, 281
HpyAV	CCTTC	3 cut(s)	177, 199, 257
HpyCH4III	ACNGT	3 cut(s)	183, 514, 563
HpyCH4V	TGCA	5 cut(s)	70, 276, 452, 668, 753
HpyF3I	CTNAG	4 cut(s)	202, 372, 384, 413
Hsp92II	CATG	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	238, 345, 544, 555
LmnI	GCTCC	4 cut(s)	25, 328, 402, 602
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	315, 590
MaeIII	GTNAC	4 cut(s)	319, 350, 476, 514
MalI	GATC	4 cut(s)	240, 347, 546, 557
MboI	GATC	4 cut(s)	238, 345, 544, 555
MboII	GAAGA	8 cut(s)	46, 233, 242, 245, 423, 518, 539, 662
MflI	RGATCY	2 cut(s)	238, 544
MlsI	TGGCCA	3 cut(s)	101, 302, 674
MluCI	AATT	2 cut(s)	678, 689
MluNI	TGGCCA	3 cut(s)	101, 302, 674
MlyI	GAGTC	3 cut(s)	13, 488, 614
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	5 cut(s)	24, 36, 217, 229, 319
Mox20I	TGGCCA	3 cut(s)	101, 302, 674
MscI	TGGCCA	3 cut(s)	101, 302, 674
MseI	TTAA	4 cut(s)	393, 540, 585, 639
MslI	CAYNNNNRTG	1 cut(s)	730
Msp20I	TGGCCA	3 cut(s)	101, 302, 674
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	2 cut(s)	40, 289
MspR9I	CCNGG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	401
NdeI	CATATG	2 cut(s)	607, 625
NdeII	GATC	4 cut(s)	238, 345, 544, 555
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	350, 514
NspV	TTCGAA	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	730
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	406
PfoI	TCCNGGA	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	3 cut(s)	12, 488, 614
PpsI	GAGTC	3 cut(s)	12, 488, 614
PspFI	CCCAGC	1 cut(s)	737
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	417, 717
PsuI	RGATCY	2 cut(s)	238, 544
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
RseI	CAYNNNNRTG	1 cut(s)	730
SaqAI	TTAA	4 cut(s)	393, 540, 585, 639
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	4 cut(s)	238, 345, 544, 555
Sau96I	GGNCC	2 cut(s)	417, 717
SchI	GAGTC	3 cut(s)	13, 488, 614
ScrFI	CCNGG	1 cut(s)	290
SfaNI	GCATC	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	2 cut(s)	417, 717
SmiMI	CAYNNNNRTG	1 cut(s)	730
SmlI	CTYRAG	2 cut(s)	92, 392
SmoI	CTYRAG	2 cut(s)	92, 392
SpeI	ACTAGT	1 cut(s)	589
Sse9I	AATT	2 cut(s)	678, 689
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	2 cut(s)	315, 590
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	2 cut(s)	401, 615
TaaI	ACNGT	3 cut(s)	183, 514, 563
TaqI	TCGA	2 cut(s)	19, 499
TasI	AATT	2 cut(s)	678, 689
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	4 cut(s)	393, 540, 585, 639
Tru9I	TTAA	4 cut(s)	393, 540, 585, 639
TscAI	CASTG	4 cut(s)	283, 427, 442, 675
TseFI	GTSAC	2 cut(s)	350, 514
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	350, 514
TspDTI	ATGAA	1 cut(s)	624
TspRI	CASTG	4 cut(s)	283, 427, 442, 675
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	417, 717
XapI	RAATTY	1 cut(s)	689
XspI	CTAG	2 cut(s)	315, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.