Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

28812696 .. 28813247

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1208300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAAGAAGCTCAATTTTTGGAGATAGCTTGGGGACTATGCAATAGCAACCAACCTTTCTTGTGGGTGGTTCGACCTGATTTAGTCCATGGATTGAATTGCCTCGAACAATTACCTAGTGGGTTTGTCGAGACTTTGAATGGGAGGGGACACATTGTGAAATGGGCGCCACAAAAAGAAGTGTTGGCCCATCTGGCAGTTGGAGCCTTTTGGACCCACAATGGTTGGAATTCTACATTCGAGAGTGTTTGTGAGGGGGTCCCCATGATTTGTACGCCAAGTTTCGCCGATCAAATGGTTCTTGCAAGATATGCGAGTGAAGTTTGGAAGGTCGGGTTGCAGATTGAAGATGGGATTGAGAGAGGTGTGATTGAAAAAGCAATTAGGAGAGTAATGGTGGAGAAGGAAGGGGAAGAGATGAGACACAGAGCCTTGAAGCTAATGGAGAAGGCAAATCTTTGCCTCAAGCAAGGTGGCTCCTCAAACCAATCTTTGGATGGGTTGGTTAAACACATTTTATCATTCAAACCATTTGGTGTTCTACAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

184

Amino Acids

20.56

Weight (kDa)

5.89

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	3 - 135	1.4e-22	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	493
AgsI	TTSAA	6 cut(s)	97, 139, 347, 374, 436, 526
AluBI	AGCT	3 cut(s)	11, 29, 439
AluI	AGCT	3 cut(s)	11, 29, 439
Alw26I	GTCTC	2 cut(s)	125, 415
AoxI	GGCC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	3 cut(s)	187, 213, 259
AvaII	GGWCC	2 cut(s)	213, 259
BanI	GGYRCC	1 cut(s)	166
BccI	CCATC	3 cut(s)	198, 344, 491
BcoDI	GTCTC	2 cut(s)	125, 415
BfaI	CTAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	194
Bme18I	GGWCC	2 cut(s)	213, 259
BmgT120I	GGNCC	3 cut(s)	187, 213, 259
BmiI	GGNNCC	6 cut(s)	168, 205, 215, 260, 261, 478
BpuEI	CTTGAG	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	166
BslFI	GGGAC	3 cut(s)	48, 162, 245
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	2 cut(s)	125, 415
BsmFI	GGGAC	3 cut(s)	48, 162, 245
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	289
Bsp19I	CCATGG	1 cut(s)	88
BspANI	GGCC	1 cut(s)	188
BspLI	GGNNCC	6 cut(s)	168, 205, 215, 260, 261, 478
BspT107I	GGYRCC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	502
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	2 cut(s)	125, 415
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 203, 311
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	502
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	187, 213, 259
Csp6I	GTAC	1 cut(s)	273
CspCI	CAANNNNNGTGG	4 cut(s)	206, 241, 454, 489
CviAII	CATG	2 cut(s)	89, 265
CviJI	RGCY	7 cut(s)	11, 29, 188, 206, 431, 439, 477
CviKI_1	RGCY	7 cut(s)	11, 29, 188, 206, 431, 439, 477
CviQI	GTAC	1 cut(s)	273
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraIII	CACNNNGTG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	213, 259
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	88
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	92, 268
FaiI	YATR	4 cut(s)	40, 90, 266, 312
FaqI	GGGAC	3 cut(s)	48, 162, 245
FatI	CATG	2 cut(s)	88, 264
FokI	GGATG	1 cut(s)	509
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	92, 268
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
Hpy188III	TCNNGA	2 cut(s)	130, 241
HpyAV	CCTTC	4 cut(s)	322, 397, 401, 442
HpyCH4V	TGCA	3 cut(s)	42, 305, 340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 203, 311
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	92, 268
HspAI	GCGC	1 cut(s)	167
KasI	GGCGCC	1 cut(s)	166
KflI	GGGWCCC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	203, 482
LpnPI	CCDG	2 cut(s)	90, 179
MaeI	CTAG	1 cut(s)	117
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	3 cut(s)	17, 359, 425
MluCI	AATT	5 cut(s)	14, 97, 110, 229, 381
Mly113I	GGCGCC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	181, 206
MnlI	CCTC	6 cut(s)	113, 138, 247, 356, 473, 490
MseI	TTAA	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	194, 203, 311
NarI	GGCGCC	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	92, 268
NlaIV	GGNNCC	6 cut(s)	168, 205, 215, 260, 261, 478
PflMI	CCANNNNNTGG	1 cut(s)	493
PluTI	GGCGCC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	6 cut(s)	168, 205, 215, 260, 261, 478
PspPI	GGNCC	3 cut(s)	187, 213, 259
PspPPI	RGGWCCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	507
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	3 cut(s)	187, 213, 259
SetI	ASST	9 cut(s)	13, 31, 58, 79, 118, 333, 367, 441, 475
SfoI	GGCGCC	1 cut(s)	168
SinI	GGWCC	2 cut(s)	213, 259
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	14, 97, 110, 229, 381
SspDI	GGCGCC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	88
TaqI	TCGA	4 cut(s)	73, 105, 129, 240
TasI	AATT	5 cut(s)	14, 97, 110, 229, 381
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	213, 259
XapI	RAATTY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	2 cut(s)	197, 494
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.