Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

45032724 .. 45033236

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG316500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGCAGAGGAAAGGCCGGAGATTGATACTCTTCCCACTGCCCTTGCAAGGCCATATGAACCCCATGCTTGAGCTGGCCAACATTCTATACTTCAAAGGCTTCTCCATAACCATCATTCACACCAACTTCAACTCTCTAAACCCTTCAACCCATCCTCACTTTACCTACCACTCGATCTCAGATAACTTATCTGAGAGCGAGGCTGCTGAAAAGGATCTCCTCCTCCTCCTTTCTCATCTCAACACAAAGTGTTTTGAACCTTTCAGGGAATGCCTGGCTACCTTGGTATCTGATGTCTCAAAAGAGCCTGTTGCTTGCTTGATCTCTGACCCTGTCTTTGATTTCACTCAATCTGTAGCAGAGAGCCTCAAGATCCCAAGGATTCTGTTAAGGACCGGTAGTGCCTCTTTCACTGCTGTTATATCTGCATTTCCACTTTTGGAGAAAAAAGGTTACATTCCAAAACAAGGTACGGTTAGTTTCTTTCTAAAAGACAAATGCAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

170

Amino Acids

19.19

Weight (kDa)

8.36

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	225, 370
AcoI	YGGCCR	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	2 cut(s)	50, 470
AgeI	ACCGGT	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	97, 133, 150, 260
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	225, 370
AoxI	GGCC	3 cut(s)	16, 52, 78
ApeKI	GCWGC	1 cut(s)	206
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AsiGI	ACCGGT	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	396
AvaII	GGWCC	1 cut(s)	396
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BalI	TGGCCA	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	122, 162
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	278
BpuEI	CTTGAG	2 cut(s)	92, 356
BsaJI	CCNNGG	2 cut(s)	285, 380
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 470
Bse118I	RCCGGY	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	285, 380
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	50, 470
BseMII	CTCAG	2 cut(s)	186, 195
BseRI	GAGGAG	3 cut(s)	212, 215, 218
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	3 cut(s)	18, 54, 80
BshTI	ACCGGT	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	19, 399
BslI	CCNNNNNNNGG	2 cut(s)	50, 470
BsmAI	GTCTC	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	18, 54, 80
Bsp143I	GATC	4 cut(s)	177, 217, 324, 375
BspANI	GGCC	3 cut(s)	18, 54, 80
BspCNI	CTCAG	2 cut(s)	187, 194
BspPI	GGATC	2 cut(s)	225, 370
BsrFI	RCCGGY	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	285, 380
BssMI	GATC	4 cut(s)	177, 217, 324, 375
BssT1I	CCWWGG	2 cut(s)	285, 380
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	78, 319
BstDEI	CTNAG	2 cut(s)	181, 195
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	4 cut(s)	180, 220, 327, 378
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	4 cut(s)	177, 217, 324, 375
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	2 cut(s)	217, 375
BstYI	RGATCY	2 cut(s)	217, 375
BsuRI	GGCC	3 cut(s)	18, 54, 80
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	38, 414
BtsIMutI	CAGTG	2 cut(s)	38, 414
Cac8I	GCNNGC	2 cut(s)	78, 319
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	474
CspAI	ACCGGT	1 cut(s)	398
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	18, 54, 76, 80, 102, 206, 281, 310, 369
CviKI_1	RGCY	9 cut(s)	18, 54, 76, 80, 102, 206, 281, 310, 369
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	181, 195
DpnI	GATC	4 cut(s)	179, 219, 326, 377
DpnII	GATC	4 cut(s)	177, 217, 324, 375
DraIII	CACNNNGTG	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	285, 380
Eco47I	GGWCC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	285, 380
ErhI	CCWWGG	2 cut(s)	285, 380
FaeI	CATG	1 cut(s)	70
FaiI	YATR	6 cut(s)	57, 59, 68, 91, 110, 425
FatI	CATG	1 cut(s)	66
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	18, 54, 80
HapII	CCGG	2 cut(s)	19, 399
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	19, 399
Hpy188I	TCNGA	4 cut(s)	184, 196, 295, 331
Hpy188III	TCNNGA	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	49, 431, 504
HpyF3I	CTNAG	2 cut(s)	181, 195
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	177, 217, 324, 375
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	32, 62, 253, 263, 290, 324, 348, 412
Lsp1109I	GCAGC	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	4 cut(s)	179, 219, 326, 377
MboI	GATC	4 cut(s)	177, 217, 324, 375
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	2 cut(s)	217, 375
MlsI	TGGCCA	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	80
MnlI	CCTC	8 cut(s)	3, 168, 196, 233, 236, 239, 380, 418
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	2 cut(s)	392, 511
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	2 cut(s)	19, 399
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	4 cut(s)	177, 217, 324, 375
NlaIII	CATG	1 cut(s)	70
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	398
PkrI	GCNGC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	396
PsuI	RGATCY	2 cut(s)	217, 375
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	392, 511
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	177, 217, 324, 375
Sau96I	GGNCC	1 cut(s)	396
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	6 cut(s)	78, 170, 265, 287, 457, 475
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	71, 371
SmoI	CTYRAG	2 cut(s)	71, 371
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	285, 380
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	2 cut(s)	392, 511
Tru9I	TTAA	2 cut(s)	392, 511
TscAI	CASTG	2 cut(s)	45, 421
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	45, 421
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.