Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

9133905 .. 9135389

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G159400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGCAAAGGAAGGGTTTGAAATTGATACTGTTTCCAATGCCCCTTCAAGGCCATTTAAACCCCATGCTAGAACTGGCCAACCTTCTTCACCACCAAGGATTCTCCATAACCATCATCCACACCCAATTCAACCCTCTCAACCCTTCAACCTATCCACACTTCACCTTCCACTCAATCCCTGTTGCCTTATCTCAAGCTGAGGCCTCCACAAGCGATATTTTGGCGTTTATTTCTCTTCTCAATGTTAAGTGTTCTGAACCCTTCAGAGAATGCTTGGCTAGGTTGCTATCAGATAATCAGGAGCCTGTTGCTTGCTTGATCTCTGACCTTCTGTTTCACTTCACTCAACCTGTTGCTGAGAGCCTTAAGCTCCCAAGGATTCTATTAAGGACTTCAGCTGCCTTTTCCTTTGTTGCTTATGCTGCATTTCCACTTCTGCTGGAAAAGGGTTACCTTCCCATACAAGATTCTCAACTAGAAGAACCAGTTATAGAGCTTCCACCTCTCAAAGTCAAAGACCTTCCGGTGCTCAAAACTATGGACCCAGAAAAATACGATGAACTAGTGTCAGGCCTGAAGAAGGAAACTGAGGCCTCATATGGGATCATTTTCAATACTTTTGAAGACCTTGAAGGAAGTTCACTGGCCACAATTCGCCAAGAATTCAACATCCCAATTTTCCCAATAGGCCCATTTCACAAGTGCTTCCCTGCAGCCTCTTCTTCTTCTTCAAGTAGCAGCTTATTATCACAAGACCAAAGCTGCATTCCATGGCTAAACTGCGAAGCACCAAAATCTGTCATCTATGTCAGCTTTGGAAGCATTGCTGCAATAAGGGAAGCCCAATTTTTGGAGATGGCTTGGGGACTAGCCAACAGCAACCAACCCTTTACATTTGAAAAATATAATGTTGCAGAGAGAGAGCATATGAGAAAAGTGGATAAAGGAATAAGAGAGGTATCAAAAGGGAGAGATCAGAAAAACTTGTCTGGGAGCAGTCAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

337

Amino Acids

37.53

Weight (kDa)

5.75

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	853
AclWI	GGATC	1 cut(s)	614
AcoI	YGGCCR	2 cut(s)	78, 648
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	3 cut(s)	250, 381, 599
AfiI	CCNNNNNNNGG	4 cut(s)	50, 583, 603, 853
AflII	CTTAAG	1 cut(s)	368
AhlI	ACTAGT	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	753, 785
AluBI	AGCT	7 cut(s)	200, 373, 401, 499, 744, 765, 816
AluI	AGCT	7 cut(s)	200, 373, 401, 499, 744, 765, 816
Alw21I	GWGCWC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	614
AoxI	GGCC	7 cut(s)	52, 78, 204, 574, 594, 648, 691
ApeKI	GCWGC	6 cut(s)	401, 425, 716, 741, 765, 830
ApoI	RAATTY	1 cut(s)	665
AspS9I	GGNCC	2 cut(s)	544, 692
AsuHPI	GGTGA	2 cut(s)	83, 157
AvaII	GGWCC	1 cut(s)	544
BalI	TGGCCA	2 cut(s)	80, 650
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	534
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	6 cut(s)	388, 412, 728, 752, 753, 817
BccI	CCATC	2 cut(s)	122, 853
BcuI	ACTAGT	1 cut(s)	565
BfaI	CTAG	5 cut(s)	71, 282, 479, 566, 872
BfmI	CTRYAG	1 cut(s)	714
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	6 cut(s)	402, 426, 717, 742, 766, 831
BlsI	GCNGC	6 cut(s)	403, 427, 718, 743, 767, 832
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	544, 692
BmiI	GGNNCC	2 cut(s)	306, 546
BpiI	GAAGAC	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	97, 377, 773
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 583, 603, 853
Bse1I	ACTGG	3 cut(s)	81, 488, 651
Bse3DI	GCAATG	1 cut(s)	825
BseDI	CCNNGG	3 cut(s)	97, 377, 773
BseGI	GGATG	2 cut(s)	117, 672
BseLI	CCNNNNNNNGG	4 cut(s)	50, 583, 603, 853
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	3 cut(s)	192, 351, 582
BseNI	ACTGG	3 cut(s)	81, 488, 651
BseXI	GCAGC	6 cut(s)	388, 412, 728, 752, 753, 817
BshFI	GGCC	7 cut(s)	54, 80, 206, 576, 596, 650, 693
BsiHKAI	GWGCWC	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	4 cut(s)	50, 583, 603, 853
BsmFI	GGGAC	1 cut(s)	882
BsmI	GAATGC	2 cut(s)	278, 768
BsnI	GGCC	7 cut(s)	54, 80, 206, 576, 596, 650, 693
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	3 cut(s)	321, 606, 976
Bsp19I	CCATGG	1 cut(s)	773
BspANI	GGCC	7 cut(s)	54, 80, 206, 576, 596, 650, 693
BspCNI	CTCAG	3 cut(s)	193, 352, 583
BspLI	GGNNCC	2 cut(s)	306, 546
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	1 cut(s)	614
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	825
BsrI	ACTGG	3 cut(s)	81, 488, 651
BssECI	CCNNGG	3 cut(s)	97, 377, 773
BssMI	GATC	3 cut(s)	321, 606, 976
BssT1I	CCWWGG	3 cut(s)	97, 377, 773
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	2 cut(s)	243, 727
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	201, 360, 591
BstDSI	CCRYGG	1 cut(s)	773
BstEII	GGTNACC	1 cut(s)	452
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	117, 672
BstKTI	GATC	3 cut(s)	324, 609, 979
BstMBI	GATC	3 cut(s)	321, 606, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 822
BstPI	GGTNACC	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	6 cut(s)	388, 412, 728, 752, 753, 817
BstV2I	GAAGAC	1 cut(s)	633
BsuRI	GGCC	7 cut(s)	54, 80, 206, 576, 596, 650, 693
BtgI	CCRYGG	1 cut(s)	773
BtsCI	GGATG	2 cut(s)	117, 672
BtsIMutI	CAGTG	1 cut(s)	644
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	544, 692
CviAII	CATG	2 cut(s)	67, 774
DdeI	CTNAG	3 cut(s)	201, 360, 591
DpnI	GATC	3 cut(s)	323, 608, 978
DpnII	GATC	3 cut(s)	321, 606, 976
DraI	TTTAAA	1 cut(s)	60
EaeI	YGGCCR	2 cut(s)	78, 648
Eam1104I	CTCTTC	2 cut(s)	243, 727
EarI	CTCTTC	2 cut(s)	243, 727
Eco130I	CCWWGG	3 cut(s)	97, 377, 773
Eco147I	AGGCCT	3 cut(s)	206, 576, 596
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	3 cut(s)	250, 381, 599
Eco91I	GGTNACC	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	665
EcoT14I	CCWWGG	3 cut(s)	97, 377, 773
ErhI	CCWWGG	3 cut(s)	97, 377, 773
FaeI	CATG	2 cut(s)	70, 777
FaqI	GGGAC	1 cut(s)	882
FatI	CATG	2 cut(s)	66, 773
FauNDI	CATATG	2 cut(s)	601, 930
Fnu4HI	GCNGC	6 cut(s)	402, 426, 717, 742, 766, 831
FokI	GGATG	2 cut(s)	104, 659
Fsp4HI	GCNGC	6 cut(s)	402, 426, 717, 742, 766, 831
FspBI	CTAG	5 cut(s)	71, 282, 479, 566, 872
GluI	GCNGC	6 cut(s)	402, 426, 717, 742, 766, 831
HaeIII	GGCC	7 cut(s)	54, 80, 206, 576, 596, 650, 693
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	2 cut(s)	70, 777
HinfI	GANTC	3 cut(s)	102, 382, 470
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	2 cut(s)	83, 157
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	5 cut(s)	259, 269, 295, 328, 981
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	644
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	428, 716, 768, 833, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 822
HpyF3I	CTNAG	3 cut(s)	201, 360, 591
Hsp92II	CATG	2 cut(s)	70, 777
Kzo9I	GATC	3 cut(s)	321, 606, 976
LmnI	GCTCC	4 cut(s)	4, 304, 378, 996
Lsp1109I	GCAGC	6 cut(s)	388, 412, 728, 752, 753, 817
MaeI	CTAG	5 cut(s)	71, 282, 479, 566, 872
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	3 cut(s)	323, 608, 978
MboI	GATC	3 cut(s)	321, 606, 976
MboII	GAAGA	9 cut(s)	80, 230, 494, 592, 638, 714, 717, 720, 723
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	2 cut(s)	80, 650
MluCI	AATT	6 cut(s)	23, 128, 654, 665, 678, 848
MluNI	TGGCCA	2 cut(s)	80, 650
MnlI	CCTC	8 cut(s)	147, 196, 217, 516, 586, 607, 730, 952
Mox20I	TGGCCA	2 cut(s)	80, 650
MscI	TGGCCA	2 cut(s)	80, 650
MseI	TTAA	4 cut(s)	59, 249, 369, 389
Msp20I	TGGCCA	2 cut(s)	80, 650
MspA1I	CMGCKG	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	527
Mva1269I	GAATGC	2 cut(s)	278, 768
MwoI	GCNNNNNNNGC	2 cut(s)	425, 822
NcoI	CCATGG	1 cut(s)	773
NdeI	CATATG	2 cut(s)	601, 930
NdeII	GATC	3 cut(s)	321, 606, 976
NlaIII	CATG	2 cut(s)	70, 777
NlaIV	GGNNCC	2 cut(s)	306, 546
PceI	AGGCCT	3 cut(s)	206, 576, 596
PctI	GAATGC	2 cut(s)	278, 768
PfeI	GAWTC	3 cut(s)	102, 382, 470
PflMI	CCANNNNNTGG	1 cut(s)	853
PkrI	GCNGC	6 cut(s)	403, 427, 718, 743, 767, 832
PspEI	GGTNACC	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	306, 546
PspPI	GGNCC	2 cut(s)	544, 692
PstI	CTGCAG	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	59, 249, 369, 389
SatI	GCNGC	6 cut(s)	402, 426, 717, 742, 766, 831
Sau3AI	GATC	3 cut(s)	321, 606, 976
Sau96I	GGNCC	2 cut(s)	544, 692
SduI	GDGCHC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	714
SinI	GGWCC	1 cut(s)	544
SmlI	CTYRAG	2 cut(s)	195, 368
SmoI	CTYRAG	2 cut(s)	195, 368
SpeI	ACTAGT	1 cut(s)	565
Sse9I	AATT	6 cut(s)	23, 128, 654, 665, 678, 848
SseBI	AGGCCT	3 cut(s)	206, 576, 596
SspMI	CTAG	5 cut(s)	71, 282, 479, 566, 872
StuI	AGGCCT	3 cut(s)	206, 576, 596
StyI	CCWWGG	3 cut(s)	97, 377, 773
TaaI	ACNGT	1 cut(s)	33
TasI	AATT	6 cut(s)	23, 128, 654, 665, 678, 848
TfiI	GAWTC	3 cut(s)	102, 382, 470
Tru1I	TTAA	4 cut(s)	59, 249, 369, 389
Tru9I	TTAA	4 cut(s)	59, 249, 369, 389
TscAI	CASTG	1 cut(s)	651
TseI	GCWGC	6 cut(s)	401, 425, 716, 741, 765, 830
TspDTI	ATGAA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	651
Van91I	CCANNNNNTGG	1 cut(s)	853
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	544
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	5 cut(s)	71, 282, 479, 566, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.