Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

18425478 .. 18427787

Gene Structure 2310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTAAGATTTATAAGCCTAGGTGTTTACTGCTTGATGGGTCATGTGTTTTTCAATTATCCTCATACTTAGACATCTATGGTTTCACTGCTTTGTTAGAATCTCAACTAGAAGAGCCAGTAGTAGAGTTGCCACCACTCAAAGTCAAGGACCTTCCAACGAACTCTTGTGACCCAAAGATATTTTTGCAACTAATAACTGAATGGGGAAATGTAATCAAGACTTCAGATGGAGTAATTTTCAATACTTCTGAAGATCTTGAAGAACAAGCACTGCTTACAATCCGACCAGACTTTCCCATCCCAATTTTCCCAATAGGTCCATTTCACAAATGGTTCCCAACCTCCTATACAAGTAGCTTATTATCAGAGGATGAAAGTTGCATTTCATGGCTAAATACTCAAGCACCAAAGTCTGTTGTCTATATTAGCTTTGGAAGCATTGCTGCAGTAAATGAAGCTCAATTTTTGGAAATAGCATGGGGACTAGCCAACACCAATCAGCCTTTCTTGTGGGTGGTTCGACCTGGATTACTCCAAGGCTCTGAATGGCTAGAAAAATTACCTCAAGGGTACCTGGAGGCTTTAGATGGGAAGGGTCACATTGTGAAATGGGCACCACAGAAAAAGGTGCTGGCTCATCCAGCTGTGGGACTATTCTGGACTCACAATGGGTGGAATTCAACATTGGAGAGTATTTCTGAGGGGGTGCCTATGGTCTGTATGCCAATTTCTTGCGATCAAATGTTAAATGCAAGATATGTGAGTGATGTTTGGAGAGTAGGGTTGCAGTTAGAGAAGGGGATCAAAAGAGGCGAAATTGAGATAACAATTCGGAACCTGATGACAGAGAAAGAAGGGGAAGAGATCAAAGACAAAATGTCAAAGCTTAAGGAGAAGACAAATCTGTCACTCAGAGAAGGTGGCTCTTCATACCAATCTTTGGATGGCTTGGTTAACCATATTCTATCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

326

Amino Acids

36.47

Weight (kDa)

5.12

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	130 - 287	1.9e-28	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	15, 976
AasI	GACNNNNNNGTC	1 cut(s)	907
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	3 cut(s)	573, 616, 709
AccB7I	CCANNNNNTGG	1 cut(s)	943
AclWI	GGATC	1 cut(s)	812
AcsI	RAATTY	1 cut(s)	679
AcuI	CTGAAG	2 cut(s)	210, 273
AdeI	CACNNNGTG	1 cut(s)	607
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	650, 943
AflII	CTTAAG	1 cut(s)	890
AgsI	TTSAA	4 cut(s)	56, 244, 263, 684
AhdI	GACNNNNNGTC	1 cut(s)	880
AjnI	CCWGG	2 cut(s)	526, 576
AjuI	GAANNNNNNNTTGG	4 cut(s)	491, 523, 671, 703
AluBI	AGCT	5 cut(s)	360, 432, 461, 647, 889
AluI	AGCT	5 cut(s)	360, 432, 461, 647, 889
AlwI	GGATC	1 cut(s)	812
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	679
Asp718I	GGTACC	1 cut(s)	573
AspA2I	CCTAGG	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	151, 320
AvaII	GGWCC	2 cut(s)	151, 320
AvrII	CCTAGG	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	619
BanI	GGYRCC	3 cut(s)	573, 616, 709
BbsI	GAAGAC	1 cut(s)	905
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	5 cut(s)	32, 224, 308, 584, 941
BciT130I	CCWGG	2 cut(s)	528, 578
BfaI	CTAG	4 cut(s)	21, 110, 488, 554
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	890
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	1 cut(s)	447
BlnI	CCTAGG	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	528, 578
Bme18I	GGWCC	2 cut(s)	151, 320
BmeRI	GACNNNNNGTC	1 cut(s)	880
BmgT120I	GGNCC	2 cut(s)	151, 320
BmiI	GGNNCC	5 cut(s)	338, 575, 618, 711, 839
BmrFI	CCNGG	2 cut(s)	528, 578
BpiI	GAAGAC	1 cut(s)	905
BpmI	CTGGAG	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	387, 552
BsaJI	CCNNGG	2 cut(s)	20, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 943
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	528, 578
BseDI	CCNNGG	2 cut(s)	20, 538
BseGI	GGATG	4 cut(s)	300, 379, 640, 952
BseLI	CCNNNNNNNGG	2 cut(s)	650, 943
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	693, 928
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	433
BshNI	GGYRCC	3 cut(s)	573, 616, 709
BslFI	GGGAC	2 cut(s)	498, 666
BslI	CCNNNNNNNGG	2 cut(s)	650, 943
BsmFI	GGGAC	2 cut(s)	498, 666
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	4 cut(s)	256, 739, 804, 867
BspCNI	CTCAG	2 cut(s)	694, 927
BspLI	GGNNCC	5 cut(s)	338, 575, 618, 711, 839
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	1 cut(s)	812
BspQI	GCTCTTC	2 cut(s)	108, 934
BspT107I	GGYRCC	3 cut(s)	573, 616, 709
BspTI	CTTAAG	1 cut(s)	890
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	20, 538
BssMI	GATC	4 cut(s)	256, 739, 804, 867
BssT1I	CCWWGG	2 cut(s)	20, 538
Bst2UI	CCWGG	2 cut(s)	528, 578
Bst6I	CTCTTC	3 cut(s)	108, 858, 934
BstAFI	CTTAAG	1 cut(s)	890
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	4 cut(s)	6, 70, 702, 914
BstF5I	GGATG	4 cut(s)	300, 379, 640, 952
BstKTI	GATC	4 cut(s)	259, 742, 807, 870
BstMBI	GATC	4 cut(s)	256, 739, 804, 867
BstMWI	GCNNNNNNNGC	2 cut(s)	438, 644
BstNI	CCWGG	2 cut(s)	528, 578
BstSCI	CCNGG	2 cut(s)	526, 576
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	905
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BtsCI	GGATG	4 cut(s)	300, 379, 640, 952
BtsI	GCAGTG	2 cut(s)	87, 272
BtsIMutI	CAGTG	2 cut(s)	87, 272
Cac8I	GCNNGC	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	151, 320
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	3 cut(s)	45, 390, 480
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	4 cut(s)	6, 70, 702, 914
DpnI	GATC	4 cut(s)	258, 741, 806, 869
DpnII	GATC	4 cut(s)	256, 739, 804, 867
DraIII	CACNNNGTG	1 cut(s)	607
DrdI	GACNNNNNNGTC	1 cut(s)	907
DriI	GACNNNNNGTC	1 cut(s)	880
DseDI	GACNNNNNNGTC	1 cut(s)	907
Eam1104I	CTCTTC	3 cut(s)	108, 858, 934
Eam1105I	GACNNNNNGTC	1 cut(s)	880
EarI	CTCTTC	3 cut(s)	108, 858, 934
Eco130I	CCWWGG	2 cut(s)	20, 538
Eco47I	GGWCC	2 cut(s)	151, 320
Eco57I	CTGAAG	2 cut(s)	210, 273
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	526, 576
EcoT14I	CCWWGG	2 cut(s)	20, 538
ErhI	CCWWGG	2 cut(s)	20, 538
FaeI	CATG	3 cut(s)	48, 393, 483
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	2 cut(s)	498, 666
FatI	CATG	3 cut(s)	44, 389, 479
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	4 cut(s)	287, 386, 627, 959
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	4 cut(s)	21, 110, 488, 554
GluI	GCNGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	599
Hin1II	CATG	3 cut(s)	48, 393, 483
HincII	GTYRAC	1 cut(s)	958
HindII	GTYRAC	1 cut(s)	958
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	2 cut(s)	101, 664
HpaI	GTTAAC	1 cut(s)	958
Hpy166II	GTNNAC	2 cut(s)	29, 958
Hpy188I	TCNGA	8 cut(s)	229, 253, 287, 370, 547, 703, 837, 917
Hpy188III	TCNNGA	3 cut(s)	220, 260, 661
Hpy8I	GTNNAC	2 cut(s)	29, 958
HpyAV	CCTTC	5 cut(s)	164, 589, 793, 851, 914
HpyCH4V	TGCA	5 cut(s)	190, 384, 449, 755, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	438, 644
HpyF3I	CTNAG	4 cut(s)	6, 70, 702, 914
Hsp92II	CATG	3 cut(s)	48, 393, 483
KpnI	GGTACC	1 cut(s)	577
KspAI	GTTAAC	1 cut(s)	958
Kzo9I	GATC	4 cut(s)	256, 739, 804, 867
LguI	GCTCTTC	2 cut(s)	108, 934
Lsp1109I	GCAGC	1 cut(s)	433
MaeI	CTAG	4 cut(s)	21, 110, 488, 554
MaeIII	GTNAC	3 cut(s)	170, 599, 909
MalI	GATC	4 cut(s)	258, 741, 806, 869
MboI	GATC	4 cut(s)	256, 739, 804, 867
MboII	GAAGA	6 cut(s)	125, 266, 275, 875, 910, 921
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	9 cut(s)	56, 237, 306, 464, 560, 679, 729, 819, 831
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	2 cut(s)	182, 310
MnlI	CCTC	7 cut(s)	73, 355, 364, 574, 576, 697, 806
MseI	TTAA	3 cut(s)	749, 891, 957
MspA1I	CMGCKG	1 cut(s)	647
MspCI	CTTAAG	1 cut(s)	890
MspR9I	CCNGG	2 cut(s)	528, 578
MvaI	CCWGG	2 cut(s)	528, 578
MwoI	GCNNNNNNNGC	2 cut(s)	438, 644
NdeII	GATC	4 cut(s)	256, 739, 804, 867
NlaIII	CATG	3 cut(s)	48, 393, 483
NlaIV	GGNNCC	5 cut(s)	338, 575, 618, 711, 839
NmuCI	GTSAC	3 cut(s)	170, 599, 909
PciSI	GCTCTTC	2 cut(s)	108, 934
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	943
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PpuMI	RGGWCCY	1 cut(s)	151
PsiI	TTATAA	2 cut(s)	15, 976
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	526, 576
PspGI	CCWGG	2 cut(s)	526, 576
PspN4I	GGNNCC	5 cut(s)	338, 575, 618, 711, 839
PspPI	GGNCC	2 cut(s)	151, 320
PspPPI	RGGWCCY	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SapI	GCTCTTC	2 cut(s)	108, 934
SaqAI	TTAA	3 cut(s)	749, 891, 957
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	4 cut(s)	256, 739, 804, 867
Sau96I	GGNCC	2 cut(s)	151, 320
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	2 cut(s)	528, 578
SduI	GDGCHC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	151, 320
SmlI	CTYRAG	3 cut(s)	402, 567, 890
SmoI	CTYRAG	3 cut(s)	402, 567, 890
Sse9I	AATT	9 cut(s)	56, 237, 306, 464, 560, 679, 729, 819, 831
SspMI	CTAG	4 cut(s)	21, 110, 488, 554
StyD4I	CCNGG	2 cut(s)	526, 576
StyI	CCWWGG	2 cut(s)	20, 538
TaqI	TCGA	1 cut(s)	523
TasI	AATT	9 cut(s)	56, 237, 306, 464, 560, 679, 729, 819, 831
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	749, 891, 957
Tru9I	TTAA	3 cut(s)	749, 891, 957
TscAI	CASTG	2 cut(s)	94, 279
TseFI	GTSAC	3 cut(s)	170, 599, 909
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	3 cut(s)	170, 599, 909
TspDTI	ATGAA	4 cut(s)	378, 390, 471, 921
TspRI	CASTG	2 cut(s)	94, 279
Van91I	CCANNNNNTGG	1 cut(s)	943
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	2 cut(s)	151, 320
XapI	RAATTY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	2 cut(s)	330, 944
XmaJI	CCTAGG	1 cut(s)	20
XspI	CTAG	4 cut(s)	21, 110, 488, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.