Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

28840396 .. 28843261

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1208900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAAAGGGCATATAAACCCTATGCTGGAACTGGCCAACATTCTCCATTCCAAAGGCTTCTCCGTAGCCATCATCCACACCAACTTCAACTCCCTCAATCCTTCAACCCGAAACCCACACTTCAGCTACCATTCAATCCCTGTTGACTTGACAGAAACCGAGGCCTCCATCAAGGATCTCACCGTTGTTCTTTCTATTCTAAATGCTAAATGTGTTGAGCCTTTCAGAGAATGCTTAGTCGGGTTGTTGTCCGATGGCTTAGATTCTCGCTTAGAAAAACCAGTGACAGAGCTTTCACCTCTCAAAGTTAAAGATCTACCAATGATGACGAACTGCGACCCTGAGGTTTTTTATAAGGTGATGACCAACATGGCAAATGAACCCATGGCTTCTTACGGACTAATTTTAAATACTTTTGAAGATCTTGAAGGACATGCACTTGCCACAATTCGCCAAGAATATTACCCCAATATTCCAATTTTCTCACTAGTCCATTTCACAAGTGTGGTCCTACAACCTGTTCTTCTTCAAGTAGTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

181

Amino Acids

20.17

Weight (kDa)

5.41

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	6 cut(s)	88, 105, 135, 419, 428, 530
AhlI	ACTAGT	1 cut(s)	487
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	2 cut(s)	126, 292
AluI	AGCT	2 cut(s)	126, 292
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	33, 162
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	3 cut(s)	172, 288, 370
AvaII	GGWCC	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	35
BccI	CCATC	3 cut(s)	77, 176, 248
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	1 cut(s)	488
BglII	AGATCT	2 cut(s)	313, 421
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BsaJI	CCNNGG	2 cut(s)	159, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	36, 281
Bse21I	CCTNAGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	159, 384
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	36, 281
BshFI	GGCC	2 cut(s)	35, 164
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	35, 164
Bsp143I	GATC	3 cut(s)	175, 313, 421
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	2 cut(s)	35, 164
BspCNI	CTCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	36, 281
BssECI	CCNNGG	2 cut(s)	159, 384
BssMI	GATC	3 cut(s)	175, 313, 421
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	184
BstDEI	CTNAG	4 cut(s)	235, 259, 271, 342
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	3 cut(s)	178, 316, 424
BstMBI	GATC	3 cut(s)	175, 313, 421
BstNSI	RCATGY	1 cut(s)	437
BstX2I	RGATCY	3 cut(s)	175, 313, 421
BstYI	RGATCY	3 cut(s)	175, 313, 421
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	35, 164
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	508
CviAII	CATG	3 cut(s)	370, 385, 434
CviJI	RGCY	9 cut(s)	35, 57, 68, 126, 164, 220, 258, 292, 389
CviKI_1	RGCY	9 cut(s)	35, 57, 68, 126, 164, 220, 258, 292, 389
DdeI	CTNAG	4 cut(s)	235, 259, 271, 342
DpnI	GATC	3 cut(s)	177, 315, 423
DpnII	GATC	3 cut(s)	175, 313, 421
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	106
Eco81I	CCTNAGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	373, 388, 437
FaiI	YATR	7 cut(s)	12, 14, 23, 354, 371, 386, 435
FatI	CATG	3 cut(s)	369, 384, 433
FokI	GGATG	1 cut(s)	59
FspBI	CTAG	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	35, 164
Hin1II	CATG	3 cut(s)	373, 388, 437
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	263
HphI	GGTGA	3 cut(s)	172, 288, 370
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	227, 253
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	111, 422
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	437
HpyF3I	CTNAG	4 cut(s)	235, 259, 271, 342
Hsp92II	CATG	3 cut(s)	373, 388, 437
Kzo9I	GATC	3 cut(s)	175, 313, 421
LpnPI	CCDG	6 cut(s)	11, 17, 153, 294, 354, 531
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	177, 315, 423
MboI	GATC	3 cut(s)	175, 313, 421
MboII	GAAGA	3 cut(s)	431, 515, 518
MflI	RGATCY	3 cut(s)	175, 313, 421
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	3 cut(s)	402, 447, 477
MluNI	TGGCCA	1 cut(s)	35
MnlI	CCTC	5 cut(s)	104, 154, 175, 309, 337
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	2 cut(s)	309, 407
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	3 cut(s)	175, 313, 421
NlaIII	CATG	3 cut(s)	373, 388, 437
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	437
OliI	CACNNNNGTG	1 cut(s)	503
PceI	AGGCCT	1 cut(s)	164
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	508
PsuI	RGATCY	3 cut(s)	175, 313, 421
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	309, 407
Sau3AI	GATC	3 cut(s)	175, 313, 421
Sau96I	GGNCC	1 cut(s)	508
SetI	ASST	6 cut(s)	128, 294, 301, 348, 360, 520
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	503
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	3 cut(s)	402, 447, 477
SseBI	AGGCCT	1 cut(s)	164
SspI	AATATT	2 cut(s)	461, 472
SspMI	CTAG	1 cut(s)	488
StuI	AGGCCT	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	3 cut(s)	402, 447, 477
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	309, 407
Tru9I	TTAA	2 cut(s)	309, 407
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	17, 393
TspGWI	ACGGA	2 cut(s)	52, 411
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	508
XceI	RCATGY	1 cut(s)	437
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.