Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

28843319 .. 28843777

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1209000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTAGCTCAGGCCTCAGATGGACTGATTTTCAATACTTTTGAAGACCTTGAAGAAACTTCACTGGCCAAAATACGCCACGAGTATCTACCCAATACTCCAATTTTCCCAATAGGCCCATTTCACAAGTATTCCCCTTCCCCTTCTTCAAATAGCCTATTGTCACAAGACCAAAGTTGCATTTCATGGCTAAACACTCAAGCACCAAAGTCAGTTGTTTATGTGAGTTTTGGGACCGTTGCCAAAATGGAAGAAGCTCAATTTTTGGAGATAGCTTGGAGACTATGCAATAGCGACCAACCCTTCTTATGGGTGGTTCGACCTAATTTAGTCCATGGATCGAATTGGCTCGAACAATTACCTAGTGGGTTGGTTGAGCCTTTGAACGGGAGGGGACACATTGTGAAATGGGCGCCACAAAATGAAGTGTTGACCCATCCGGCAGTTGGAGCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

153

Amino Acids

16.99

Weight (kDa)

5.43

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	60 - 152	3.1e-11	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	413
AdeI	CACNNNGTG	1 cut(s)	403
AfiI	CCNNNNNNNGG	3 cut(s)	309, 386, 446
AgsI	TTSAA	5 cut(s)	34, 44, 53, 150, 385
AluBI	AGCT	3 cut(s)	8, 257, 275
AluI	AGCT	3 cut(s)	8, 257, 275
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	3 cut(s)	12, 66, 115
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	2 cut(s)	116, 234
AvaII	GGWCC	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	51
BccI	CCATC	2 cut(s)	14, 444
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	116, 234
BmiI	GGNNCC	3 cut(s)	235, 414, 451
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	3 cut(s)	309, 386, 446
Bse1I	ACTGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	3 cut(s)	309, 386, 446
BseMII	CTCAG	2 cut(s)	23, 30
BseNI	ACTGG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	14, 68, 117
BshNI	GGYRCC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	247, 408
BslI	CCNNNNNNNGG	3 cut(s)	309, 386, 446
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	2 cut(s)	247, 408
BsnI	GGCC	3 cut(s)	14, 68, 117
Bsp143I	GATC	1 cut(s)	338
Bsp19I	CCATGG	1 cut(s)	334
BspANI	GGCC	3 cut(s)	14, 68, 117
BspCNI	CTCAG	2 cut(s)	22, 29
BspLI	GGNNCC	3 cut(s)	235, 414, 451
BspPI	GGATC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	338
BssNI	GRCGYC	1 cut(s)	413
BssSI	CACGAG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	9, 16
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	436
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	1 cut(s)	341
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	14, 68, 117
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	116, 234
CviAII	CATG	2 cut(s)	186, 335
DdeI	CTNAG	2 cut(s)	9, 16
DinI	GGCGCC	1 cut(s)	414
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
DraIII	CACNNNGTG	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	334
EgeI	GGCGCC	1 cut(s)	414
EheI	GGCGCC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	189, 338
FaiI	YATR	5 cut(s)	187, 222, 286, 310, 336
FaqI	GGGAC	2 cut(s)	247, 408
FatI	CATG	2 cut(s)	185, 334
FokI	GGATG	1 cut(s)	423
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	3 cut(s)	14, 68, 117
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	2 cut(s)	189, 338
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HpaII	CCGG	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	3 cut(s)	147, 153, 313
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	180, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	2 cut(s)	9, 16
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	189, 338
HspAI	GCGC	1 cut(s)	413
KasI	GGCGCC	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	2 cut(s)	50, 453
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	4 cut(s)	56, 65, 138, 263
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	5 cut(s)	102, 260, 325, 343, 356
MluNI	TGGCCA	1 cut(s)	68
Mly113I	GGCGCC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	2 cut(s)	25, 384
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	449
NarI	GGCGCC	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	1 cut(s)	338
NlaIII	CATG	2 cut(s)	189, 338
NlaIV	GGNNCC	3 cut(s)	235, 414, 451
NmuCI	GTSAC	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	14
PluTI	GGCGCC	1 cut(s)	416
PspN4I	GGNNCC	3 cut(s)	235, 414, 451
PspPI	GGNCC	2 cut(s)	116, 234
Sau3AI	GATC	1 cut(s)	338
Sau96I	GGNCC	2 cut(s)	116, 234
SetI	ASST	6 cut(s)	10, 51, 259, 277, 325, 364
SfoI	GGCGCC	1 cut(s)	414
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	5 cut(s)	102, 260, 325, 343, 356
SseBI	AGGCCT	1 cut(s)	14
SspDI	GGCGCC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	319, 341, 351
TasI	AATT	5 cut(s)	102, 260, 325, 343, 356
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	174, 438
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.