Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

25331663 .. 25332214

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1143500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGATTTGCACGCCATATTTTAGTGATCAAATGGTGAATGCAAGATTTGTGAGTGATGTTTGGAAGGTAGGGCTGCAATTGGAGCATGGGATTGAGAGAGGTGAGGTTGAAAGAACAATTAGAAGACTAATGGTTGAGAAAGAAGGGGTAGAGATCAAACAGAGAGCCTTAAATTTGATGGAAAAGGAAAATCATTGCCTGAAAGAAGGTGGCTCTTCGTACCTATCTTTGGATGGCTTGGTTAAGCACATTTTATCGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

88

Amino Acids

10.0

Weight (kDa)

6.28

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	46, 113
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	172, 227
BclI	TGATCA	1 cut(s)	25
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	25, 153
BspQI	GCTCTTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	193
BssMI	GATC	2 cut(s)	25, 153
Bst6I	CTCTTC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	2 cut(s)	28, 156
BstMBI	GATC	2 cut(s)	25, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	4 cut(s)	73, 167, 213, 237
CviKI_1	RGCY	4 cut(s)	73, 167, 213, 237
CviQI	GTAC	1 cut(s)	220
DpnI	GATC	2 cut(s)	27, 155
DpnII	GATC	2 cut(s)	25, 153
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
FaeI	CATG	1 cut(s)	89
FaiI	YATR	3 cut(s)	16, 87, 262
FatI	CATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	89
HphI	GGTGA	2 cut(s)	46, 113
HpyAV	CCTTC	3 cut(s)	58, 137, 200
HpyCH4V	TGCA	3 cut(s)	9, 41, 76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	25, 153
LguI	GCTCTTC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	1 cut(s)	212
Lsp1109I	GCAGC	1 cut(s)	60
MalI	GATC	2 cut(s)	27, 155
MboI	GATC	2 cut(s)	25, 153
MboII	GAAGA	2 cut(s)	135, 207
MfeI	CAATTG	1 cut(s)	77
MluCI	AATT	3 cut(s)	77, 117, 172
MnlI	CCTC	2 cut(s)	92, 97
MseI	TTAA	2 cut(s)	170, 243
MunI	CAATTG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	25, 153
NlaIII	CATG	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	220
PctI	GAATGC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	262
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	170, 243
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	25, 153
SetI	ASST	5 cut(s)	69, 103, 108, 211, 225
SgeI	CNNG	5 cut(s)	22, 54, 98, 211, 250
Sse9I	AATT	3 cut(s)	77, 117, 172
TasI	AATT	3 cut(s)	77, 117, 172
Tru1I	TTAA	2 cut(s)	170, 243
Tru9I	TTAA	2 cut(s)	170, 243
TseI	GCWGC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.