Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

4285946 .. 4286421

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATTTGTATGCCTTGTTTCAATAATCAACTGGTGCTTGCAAGGTATGTGAGTGAGGTTTGGAAAATTGGGTTGCAGTTTGAGAACGGAATTGAGAGAGGTGAGATTGAAGGAACAATTAGGAAACTAATGGAGGAGAAAGAAGGAGAAGAAATCAGAGACAGAAGCTTGAAGCTAATGGAGAAAGCAAATGTTTGCTTCAAACCAGGTGGATCTTCATGCCAATGCTTGGATGGCTTGAAGAATATGATTTGTTGTCGAGTTATTCCTATTGAAATTGTAAAGACACTTAAATCAAGCAATGTCGACAAATCTCTACAATCTCCGGATATGGAAATTGTGGTTGTTTTTGTGCAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

5.57

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	325
AclWI	GGATC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	6 cut(s)	22, 110, 172, 202, 241, 275
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	168, 175
AluI	AGCT	2 cut(s)	168, 175
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	113
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	2 cut(s)	307, 362
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	307, 362
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	212
BspEI	TCCGGA	1 cut(s)	325
BspPI	GGATC	1 cut(s)	220
BsrDI	GCAATG	2 cut(s)	307, 362
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	39
CsiI	ACCWGGT	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	3 cut(s)	168, 175, 237
CviKI_1	RGCY	3 cut(s)	168, 175, 237
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	222
FaiI	YATR	5 cut(s)	11, 48, 220, 248, 332
FatI	CATG	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	306
FokI	GGATG	1 cut(s)	245
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	166
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	104, 137
HpyCH4V	TGCA	3 cut(s)	41, 76, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	222
Kpn2I	TCCGGA	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	212
LpnPI	CCDG	4 cut(s)	17, 192, 219, 339
MabI	ACCWGGT	1 cut(s)	205
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	161, 207, 253
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	5 cut(s)	66, 90, 117, 276, 336
MnlI	CCTC	3 cut(s)	49, 92, 127
MroI	TCCGGA	1 cut(s)	325
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	223
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	6 cut(s)	47, 60, 103, 170, 177, 211
SexAI	ACCWGGT	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	223
Sse9I	AATT	5 cut(s)	66, 90, 117, 276, 336
StyD4I	CCNGG	1 cut(s)	205
TaqI	TCGA	2 cut(s)	259, 306
TasI	AATT	5 cut(s)	66, 90, 117, 276, 336
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.