Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

56540433 .. 56541999

Gene Structure 1567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGCAAAGCAAGGGGAGAAAATTGATACTCTTCCCAGTACCTCTTCAAGGCCATGTAATCCCGATGCTGGAGCTAGCCAACCTTCTACACTTCAAAGGCTTCTCCATAACCATAGTCCACACCCGCTTCAACAAACTGAACCCTTCAAGCTATCCGCACTTAACCTCTCACTTGATCGATGAAGGCTTGTCTCTATCTGATGTTTCAAAAGAGCCTGTTGCCTGTTTGATCACCGAATATCGCTTTTACTTCACTCAATCTCTTGCAGAGAGTTTCAAGCTACCAAGGCTTCTGCTAAGGACTGGGGGTGCTTCTTCCTTGGCTGTTTATATTGCCTTCCCGCTTATGCGTGAAAAGGGTTACTACCCTAAACAAGATTCTCGACTAGAAGAGCCGGTGAAAGAGTTTCCGCCTCTGAAAATCAAAGATCTTCCAACTATCAAAACCAAGCAGAATCCAGAACAATTTTTCCAAATGACTGCCAGTCGCCTGACAGACGAAGCCAATTCCTCACATGGAGTCATTATCAACACTTTTGAAGATATTGAAGGACAGGCGCTTATCAGACTTTGTGATGAACTATCCGCTCCAATTTTTGGAGTAGGTCCATTTCACAAGCCTTTCCCTACAACTGGTTCTTCAGGATCAGGTAGCTCTATCAACTTACCACAAGACCAGAGTTGTATTTCATGGCTCAACACCCAAGCACAAAACTCTGTTATCCATGGTTCGCAATGGCTCAAAGCGTTGCCTGATAAGTTTCTCAAAACTTTGAAAGGGAAAGGCCACATTGTGAAATGGACACCCCAGAAAGCAGTTCTGGCACATCCAGCAGTCGGAGCCTTTTGGACTCACTGCGGCTGGAATTCTACACTAGAGTGTATTAGTGAAGGGGTTCCTATGATTTGTATGCCATGTTCTGCTGATCAAATGATAAATGCTCGATATGAGAGTGTTGTTTGGAAAGTAGGGTTGCAGTTGGAGCATGGAAGAGAAAGAGGTGAGATTGAGAAAACAATTAGAAAACTAATGGTTGAGAAAGAAGGCGAAGAAATTAGAAAAAATATGGCAAACCTAAAGGAGAAGGCAGATCTTTGCTTCAGACCAGGGGGCTCATCGTATGAATGCTTGGAGGGATTGGTTAAACACATTTTATCATTGGAAGCCAGTGTTCTCCAAACTCAGATTGAAGCTACTGTGAATCCCCTAATTGGTCTTATCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

410

Amino Acids

45.68

Weight (kDa)

7.62

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	257 - 324	2.5e-20	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	590
AciI	CCGC	6 cut(s)	127, 158, 344, 413, 588, 861
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	2 cut(s)	627, 1087
AdeI	CACNNNGTG	1 cut(s)	796
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	6 cut(s)	50, 70, 599, 635, 839, 1214
AhdI	GACNNNNNGTC	1 cut(s)	486
AjnI	CCWGG	1 cut(s)	1108
AleI	CACNNNNGTG	1 cut(s)	880
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	5 cut(s)	76, 153, 283, 657, 1196
AluI	AGCT	5 cut(s)	76, 153, 283, 657, 1196
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	2 cut(s)	52, 787
ApoI	RAATTY	1 cut(s)	868
Asp700I	GAANNNNTTC	1 cut(s)	897
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	226, 412, 1016
AsuNHI	GCTAGC	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	1118
BciT130I	CCWGG	1 cut(s)	1110
BclI	TGATCA	2 cut(s)	231, 928
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	3 cut(s)	77, 389, 878
BfoI	RGCGCY	1 cut(s)	563
BglII	AGATCT	2 cut(s)	430, 1093
BisI	GCNGC	1 cut(s)	862
BlsI	GCNGC	1 cut(s)	863
Bme1390I	CCNGG	1 cut(s)	1110
Bme18I	GGWCC	1 cut(s)	608
BmeRI	GACNNNNNGTC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	844, 900
BmrFI	CCNGG	1 cut(s)	1110
BmrI	ACTGGG	2 cut(s)	32, 315
BmsI	GCATC	1 cut(s)	57
BmtI	GCTAGC	1 cut(s)	80
BmuI	ACTGGG	2 cut(s)	32, 315
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	287, 321, 727, 1109
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 70, 599, 635, 839, 1214
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	5 cut(s)	38, 310, 486, 640, 1170
Bse3DI	GCAATG	1 cut(s)	743
BseBI	CCWGG	1 cut(s)	1110
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	287, 321, 727, 1109
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	6 cut(s)	50, 70, 599, 635, 839, 1214
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	1 cut(s)	1199
BseNI	ACTGG	5 cut(s)	38, 310, 486, 640, 1170
BshFI	GGCC	2 cut(s)	54, 789
BshVI	ATCGAT	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	6 cut(s)	50, 70, 599, 635, 839, 1214
BsmAI	GTCTC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	1133
BsnI	GGCC	2 cut(s)	54, 789
Bsp1286I	GDGCHC	1 cut(s)	1118
Bsp143I	GATC	6 cut(s)	177, 231, 430, 647, 928, 1093
Bsp19I	CCATGG	1 cut(s)	727
BspACI	CCGC	6 cut(s)	127, 158, 344, 413, 588, 861
BspANI	GGCC	2 cut(s)	54, 789
BspCNI	CTCAG	1 cut(s)	1198
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	844, 900
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	655
BspQI	GCTCTTC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	743
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	5 cut(s)	38, 310, 486, 640, 1170
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	4 cut(s)	287, 321, 727, 1109
BssMI	GATC	6 cut(s)	177, 231, 430, 647, 928, 1093
BssT1I	CCWWGG	3 cut(s)	287, 321, 727
Bst2UI	CCWGG	1 cut(s)	1110
Bst4CI	ACNGT	1 cut(s)	1201
Bst6I	CTCTTC	4 cut(s)	38, 51, 387, 988
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	299, 1185
BstDSI	CCRYGG	1 cut(s)	727
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	829
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	6 cut(s)	180, 234, 433, 650, 931, 1096
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	6 cut(s)	177, 231, 430, 647, 928, 1093
BstMWI	GCNNNNNNNGC	5 cut(s)	289, 824, 833, 842, 985
BstNI	CCWGG	1 cut(s)	1110
BstSCI	CCNGG	1 cut(s)	1108
BstX2I	RGATCY	2 cut(s)	430, 1093
BstYI	RGATCY	2 cut(s)	430, 1093
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	54, 789
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	1 cut(s)	829
BtsI	GCAGTG	1 cut(s)	856
BtsIMutI	CAGTG	2 cut(s)	856, 1177
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	608
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	6 cut(s)	56, 518, 693, 728, 918, 989
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	299, 1185
DpnI	GATC	6 cut(s)	179, 233, 432, 649, 930, 1095
DpnII	GATC	6 cut(s)	177, 231, 430, 647, 928, 1093
DraIII	CACNNNGTG	1 cut(s)	796
DriI	GACNNNNNGTC	1 cut(s)	486
Eam1104I	CTCTTC	4 cut(s)	38, 51, 387, 988
Eam1105I	GACNNNNNGTC	1 cut(s)	486
EarI	CTCTTC	4 cut(s)	38, 51, 387, 988
EciI	GGCGGA	1 cut(s)	402
Eco130I	CCWWGG	3 cut(s)	287, 321, 727
Eco24I	GRGCYC	1 cut(s)	1118
Eco47I	GGWCC	1 cut(s)	608
Eco57I	CTGAAG	2 cut(s)	627, 1087
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	868
EcoRII	CCWGG	1 cut(s)	1108
EcoT14I	CCWWGG	3 cut(s)	287, 321, 727
EcoT38I	GRGCYC	1 cut(s)	1118
ErhI	CCWWGG	3 cut(s)	287, 321, 727
FaeI	CATG	6 cut(s)	59, 521, 696, 731, 921, 992
FatI	CATG	6 cut(s)	55, 517, 692, 727, 917, 988
FauI	CCCGC	2 cut(s)	134, 351
FbaI	TGATCA	2 cut(s)	231, 928
Fnu4HI	GCNGC	1 cut(s)	862
FokI	GGATG	1 cut(s)	816
FriOI	GRGCYC	1 cut(s)	1118
Fsp4HI	GCNGC	1 cut(s)	862
FspBI	CTAG	3 cut(s)	77, 389, 878
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	1 cut(s)	862
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	54, 789
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	59, 521, 696, 731, 921, 992
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HinfI	GANTC	5 cut(s)	380, 457, 522, 853, 1204
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	3 cut(s)	226, 412, 1016
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	6 cut(s)	202, 420, 569, 842, 1106, 1188
Hpy188III	TCNNGA	4 cut(s)	64, 384, 461, 645
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	8 cut(s)	95, 156, 179, 349, 545, 887, 1040, 1081
HpyCH4III	ACNGT	1 cut(s)	1201
HpyCH4V	TGCA	2 cut(s)	269, 979
HpyF10VI	GCNNNNNNNGC	5 cut(s)	289, 824, 833, 842, 985
HpyF3I	CTNAG	2 cut(s)	299, 1185
Hsp92II	CATG	6 cut(s)	59, 521, 696, 731, 921, 992
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	2 cut(s)	231, 928
Kzo9I	GATC	6 cut(s)	177, 231, 430, 647, 928, 1093
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	5 cut(s)	4, 73, 595, 842, 985
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	3 cut(s)	77, 389, 878
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	6 cut(s)	179, 233, 432, 649, 930, 1095
MbiI	CCGCTC	1 cut(s)	590
MboI	GATC	6 cut(s)	177, 231, 430, 647, 928, 1093
MboII	GAAGA	9 cut(s)	25, 38, 309, 404, 425, 554, 633, 1005, 1064
MflI	RGATCY	2 cut(s)	430, 1093
MhlI	GDGCHC	1 cut(s)	1118
MluCI	AATT	8 cut(s)	23, 467, 508, 594, 868, 1020, 1056, 1212
MlyI	GAGTC	2 cut(s)	531, 847
MmeI	TCCRAC	3 cut(s)	461, 820, 963
MnlI	CCTC	6 cut(s)	54, 178, 426, 523, 995, 1129
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	2 cut(s)	164, 1146
MslI	CAYNNNNRTG	1 cut(s)	880
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	1110
Mva1269I	GAATGC	1 cut(s)	1133
MvaI	CCWGG	1 cut(s)	1110
MwoI	GCNNNNNNNGC	5 cut(s)	289, 824, 833, 842, 985
NcoI	CCATGG	1 cut(s)	727
NdeII	GATC	6 cut(s)	177, 231, 430, 647, 928, 1093
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	6 cut(s)	59, 521, 696, 731, 921, 992
NlaIV	GGNNCC	2 cut(s)	844, 900
OliI	CACNNNNGTG	1 cut(s)	880
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	1133
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	380, 457, 1204
PflMI	CCANNNNNTGG	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	863
PleI	GAGTC	2 cut(s)	530, 847
PpsI	GAGTC	2 cut(s)	530, 847
Psp6I	CCWGG	1 cut(s)	1108
PspGI	CCWGG	1 cut(s)	1108
PspN4I	GGNNCC	2 cut(s)	844, 900
PspPI	GGNCC	1 cut(s)	608
PsrI	GAACNNNNNNTAC	2 cut(s)	904, 936
PsuI	RGATCY	2 cut(s)	430, 1093
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	880
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	164, 1146
SatI	GCNGC	1 cut(s)	862
Sau3AI	GATC	6 cut(s)	177, 231, 430, 647, 928, 1093
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	2 cut(s)	531, 847
ScrFI	CCNGG	1 cut(s)	1110
SduI	GDGCHC	1 cut(s)	1118
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	880
Sse9I	AATT	8 cut(s)	23, 467, 508, 594, 868, 1020, 1056, 1212
SsiI	CCGC	6 cut(s)	127, 158, 344, 413, 588, 861
SspMI	CTAG	3 cut(s)	77, 389, 878
StyD4I	CCNGG	1 cut(s)	1108
StyI	CCWWGG	3 cut(s)	287, 321, 727
TaaI	ACNGT	1 cut(s)	1201
TaqI	TCGA	4 cut(s)	180, 385, 946, 1224
TasI	AATT	8 cut(s)	23, 467, 508, 594, 868, 1020, 1056, 1212
TauI	GCSGC	1 cut(s)	864
TfiI	GAWTC	3 cut(s)	380, 457, 1204
Tru1I	TTAA	2 cut(s)	164, 1146
Tru9I	TTAA	2 cut(s)	164, 1146
TscAI	CASTG	2 cut(s)	863, 1177
TspDTI	ATGAA	4 cut(s)	198, 594, 681, 1140
TspRI	CASTG	2 cut(s)	863, 1177
Van91I	CCANNNNNTGG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	608
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	868
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	3 cut(s)	77, 389, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.