Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

11098714 .. 11100558

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG149600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGCAAAGCAAGGGGAGAAGATTGATACTCTTCCCAGTACCTCTTCAAGGCCATGTAATCCCGATGCTGGAGCTAGCCAACCTTCTACACTTCAAAGGCTTCTCCATAACCATAGTCCACACCCACTTCAACAAACTGAACCCCTCAAGCTATCCGCACTTAACCTTTCACTTGATCGATGAAGGCTTGTCTGTAGGTGAGGCCTCCACAAAGGACATTGCCCATCTTGTGTCGCTTCTAGATCAGAAATGTGCTGGACCATTCAAGGAATGCTTGATTAGCTTGCTATCTGATGTTTCAAAAGAGCCTGTTGCGTGTTTGATCACCGAATATCGCTTTTACTTCACTCAATCTCTTGCAGAGAGTTTCAAGCTACCAAGGCTTCTGCTAAGGACTGGGGGTGCTTCTTCCTTGGCTGTTTATATTGCCTTCCCGCTTATGCGTGAAAAGGGTTACTACCCTAAACAAGATTCTCGACTAGAAGAGCCGGTGAAAGAGTTTCCGCCGCTGAAAATCAAAGATCTTCCAACTATCAAAACCAAGCAGAATCCAGAACAATTTTTCCAAATGACTGCCAGTCGCCTGACAGATGAAGCCAATTCCTCACATGGAGTCATTATCAACACTTTTGAAGATATTGAAGGACAGGCGCTTATCAGACTTTGTGATGAACTATCCGCTCCAATTTTTGGATCCAACTTAGCTAGGAATGTTATTCCAATCCTTGATCAGCCAATTAAACTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

250

Amino Acids

28.09

Weight (kDa)

6.71

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccBSI	CCGCTC	1 cut(s)	683
AciI	CCGC	5 cut(s)	158, 437, 506, 509, 681
AclWI	GGATC	2 cut(s)	690, 703
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	3 cut(s)	50, 70, 692
AgsI	TTSAA	8 cut(s)	50, 97, 133, 268, 303, 373, 635, 644
AhdI	GACNNNNNGTC	1 cut(s)	579
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	5 cut(s)	76, 153, 285, 376, 707
AluI	AGCT	5 cut(s)	76, 153, 285, 376, 707
AlwI	GGATC	2 cut(s)	690, 703
AoxI	GGCC	2 cut(s)	52, 204
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	212, 319, 505
AsuNHI	GCTAGC	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	695
BccI	CCATC	1 cut(s)	234
BclI	TGATCA	2 cut(s)	324, 730
BfaI	CTAG	4 cut(s)	77, 242, 482, 708
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	656
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	260
BmeRI	GACNNNNNGTC	1 cut(s)	579
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	697
BmrI	ACTGGG	2 cut(s)	32, 408
BmsI	GCATC	1 cut(s)	57
BmtI	GCTAGC	1 cut(s)	80
BmuI	ACTGGG	2 cut(s)	32, 408
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	133
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	380, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 70, 692
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	3 cut(s)	38, 403, 579
Bse3DI	GCAATG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	380, 414
BseLI	CCNNNNNNNGG	3 cut(s)	50, 70, 692
BseMI	GCAATG	1 cut(s)	219
BseNI	ACTGG	3 cut(s)	38, 403, 579
BshFI	GGCC	2 cut(s)	54, 206
BshVI	ATCGAT	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	491
BslI	CCNNNNNNNGG	3 cut(s)	50, 70, 692
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	54, 206
Bsp143I	GATC	6 cut(s)	177, 244, 324, 523, 695, 730
BspACI	CCGC	5 cut(s)	158, 437, 506, 509, 681
BspANI	GGCC	2 cut(s)	54, 206
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	697
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	690, 703
BspQI	GCTCTTC	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	3 cut(s)	38, 403, 579
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	380, 414
BssMI	GATC	6 cut(s)	177, 244, 324, 523, 695, 730
BssT1I	CCWWGG	2 cut(s)	380, 414
Bst6I	CTCTTC	3 cut(s)	38, 51, 480
BstC8I	GCNNGC	2 cut(s)	78, 287
BstDEI	CTNAG	2 cut(s)	392, 703
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	6 cut(s)	180, 247, 327, 526, 698, 733
BstMBI	GATC	6 cut(s)	177, 244, 324, 523, 695, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 382
BstSFI	CTRYAG	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	523, 695
BstYI	RGATCY	2 cut(s)	523, 695
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	54, 206
BsuTUI	ATCGAT	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	78, 287
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	2 cut(s)	56, 611
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	392, 703
DpnI	GATC	6 cut(s)	179, 246, 326, 525, 697, 732
DpnII	GATC	6 cut(s)	177, 244, 324, 523, 695, 730
DriI	GACNNNNNGTC	1 cut(s)	579
Eam1104I	CTCTTC	3 cut(s)	38, 51, 480
Eam1105I	GACNNNNNGTC	1 cut(s)	579
EarI	CTCTTC	3 cut(s)	38, 51, 480
EciI	GGCGGA	1 cut(s)	495
Eco130I	CCWWGG	2 cut(s)	380, 414
Eco147I	AGGCCT	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	380, 414
ErhI	CCWWGG	2 cut(s)	380, 414
FaeI	CATG	2 cut(s)	59, 614
FaiI	YATR	8 cut(s)	57, 110, 116, 426, 443, 612, 749, 751
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	2 cut(s)	55, 610
FauI	CCCGC	1 cut(s)	444
FbaI	TGATCA	2 cut(s)	324, 730
Fnu4HI	GCNGC	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	4 cut(s)	77, 242, 482, 708
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	1 cut(s)	509
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	54, 206
HapII	CCGG	1 cut(s)	491
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	2 cut(s)	59, 614
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HinfI	GANTC	3 cut(s)	473, 550, 615
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	3 cut(s)	212, 319, 505
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	249, 295, 662
Hpy188III	TCNNGA	4 cut(s)	64, 242, 477, 554
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	4 cut(s)	95, 179, 442, 638
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 382
HpyF3I	CTNAG	2 cut(s)	392, 703
Hsp92II	CATG	2 cut(s)	59, 614
HspAI	GCGC	1 cut(s)	653
Ksp22I	TGATCA	2 cut(s)	324, 730
Kzo9I	GATC	6 cut(s)	177, 244, 324, 523, 695, 730
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	3 cut(s)	4, 73, 688
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	4 cut(s)	77, 242, 482, 708
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	6 cut(s)	179, 246, 326, 525, 697, 732
MbiI	CCGCTC	1 cut(s)	683
MboI	GATC	6 cut(s)	177, 244, 324, 523, 695, 730
MboII	GAAGA	7 cut(s)	25, 33, 38, 402, 497, 518, 647
MflI	RGATCY	2 cut(s)	523, 695
MluCI	AATT	4 cut(s)	560, 601, 687, 738
MlyI	GAGTC	1 cut(s)	624
MmeI	TCCRAC	2 cut(s)	554, 723
MnlI	CCTC	5 cut(s)	54, 157, 196, 217, 616
MseI	TTAA	2 cut(s)	164, 741
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	282, 382
NdeII	GATC	6 cut(s)	177, 244, 324, 523, 695, 730
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	59, 614
NlaIV	GGNNCC	1 cut(s)	697
PceI	AGGCCT	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	480
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	473, 550
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	1 cut(s)	510
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	697
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	523, 695
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	164, 741
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	6 cut(s)	177, 244, 324, 523, 695, 730
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	624
SetI	ASST	9 cut(s)	46, 78, 87, 155, 170, 202, 287, 378, 709
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	4 cut(s)	560, 601, 687, 738
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	5 cut(s)	158, 437, 506, 509, 681
SspMI	CTAG	4 cut(s)	77, 242, 482, 708
StuI	AGGCCT	1 cut(s)	206
StyI	CCWWGG	2 cut(s)	380, 414
TaqI	TCGA	2 cut(s)	180, 478
TasI	AATT	4 cut(s)	560, 601, 687, 738
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	473, 550
Tru1I	TTAA	2 cut(s)	164, 741
Tru9I	TTAA	2 cut(s)	164, 741
TspDTI	ATGAA	3 cut(s)	198, 609, 687
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	48
XbaI	TCTAGA	1 cut(s)	241
XspI	CTAG	4 cut(s)	77, 242, 482, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.