Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

4286458 .. 4292068

Gene Structure 5611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTTCTTGTATTGTCATCTTAGTCGGTTGATCTCTAATGTCCCAAAGGATGAGAAAAAGGCCCTGACAGAAGTTGGCAACAAATTGTTTTCCTCCATCGAAGAGCTGGCTAATCTTCTACACTCCAAAGGCTTCTCCATAACCATCATCCACACCCAGTTCAACTCCCCAAACCCTTCACTCTATCCACACTTCACCTTTCGCTCAATCCCAGATGGGTTGTCTGAAACTGAGGCTTCCTCCAAAGATATCATCCTTCTCTTCTCTCTTTTCAATACTAAATGTGTTAAACCCTTCAAGTTATGCTTGTCTAGCTTGTTATCAGAGGAGCCTGTTGCTTGTTTGATCTCTAACTCTATATTCCATTTCACTCAATCTGTTGCTGAGAGCTTTAAGCTCCCAAGGATTGTCTTTGAGACCGGGGGTATGACTTCTTATGCTGTTTTTACTCAGTTTCCATTATTAAGAGAAAAGGGCTACCTTCCGGTCACGCAAGCCTCTGATGGAGTCATTTTTAACACTTTTAGAGACCTTGAAGAGCAAGGACTGGCAACATTGCACAAACAATACCCTAATCTTCTAGTTTTCCCGATGGGCCCATTTCACAAGTGTGTCCCTGAGGAAGCCTCTTCTTCAATTAGCGACCAAAGTTGCATTTCTTGGCTAAACACCCGAGCACCAAACTCTGTTATCTATGTCAGCTTTGGGACCGTTGCAGCAATAACCGAAGCTCAGTTTTTGGAGATAGCTTGGGGACTAGCCAATAGCAACCAACTTTTCTTGTGGGTGGTTCGACCCAGATTAGTCCACGGGTCGGATTGGCTCGAACAATTGCCTAGTGGGTTTCTTGAGAATTTGAATGGGAGGGGTCACATTGTAAAATGGGCACCCCAAAAAGAAGTGTTGGCACATCCATCAATTGGAGCTTTTTGGACTCATAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

316

Amino Acids

35.23

Weight (kDa)

6.41

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	221 - 315	8.3e-13	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	886
AccB7I	CCANNNNNTGG	1 cut(s)	920
AcsI	RAATTY	1 cut(s)	853
AfiI	CCNNNNNNNGG	2 cut(s)	814, 920
AgsI	TTSAA	6 cut(s)	163, 274, 298, 536, 636, 859
AleI	CACNNNNGTG	1 cut(s)	609
AluBI	AGCT	8 cut(s)	106, 315, 390, 397, 702, 731, 749, 926
AluI	AGCT	8 cut(s)	106, 315, 390, 397, 702, 731, 749, 926
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	2 cut(s)	410, 522
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	2 cut(s)	60, 595
ApaI	GGGCCC	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	853
AspS9I	GGNCC	4 cut(s)	61, 595, 596, 708
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	1 cut(s)	708
AxyI	CCTNAGG	1 cut(s)	618
BaeGI	GKGCMC	2 cut(s)	599, 889
BanI	GGYRCC	1 cut(s)	886
BanII	GRGCYC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	1 cut(s)	728
BccI	CCATC	6 cut(s)	104, 152, 209, 497, 586, 922
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	410, 522
BfaI	CTAG	4 cut(s)	312, 581, 758, 837
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	708
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	4 cut(s)	61, 595, 596, 708
BmiI	GGNNCC	4 cut(s)	330, 597, 709, 888
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BplI	GAGNNNNNCTC	4 cut(s)	224, 256, 611, 643
BpuEI	CTTGAG	1 cut(s)	869
BpuMI	CCSGG	1 cut(s)	421
BsaI	GGTCTC	2 cut(s)	410, 522
BsaJI	CCNNGG	3 cut(s)	401, 420, 808
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	814, 920
Bse1I	ACTGG	2 cut(s)	157, 552
Bse21I	CCTNAGG	1 cut(s)	618
Bse3DI	GCAATG	1 cut(s)	554
BseDI	CCNNGG	3 cut(s)	401, 420, 808
BseGI	GGATG	4 cut(s)	55, 147, 252, 910
BseLI	CCNNNNNNNGG	2 cut(s)	814, 920
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	5 cut(s)	222, 375, 464, 609, 746
BseNI	ACTGG	2 cut(s)	157, 552
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	2 cut(s)	599, 889
BseXI	GCAGC	1 cut(s)	728
BshFI	GGCC	2 cut(s)	62, 597
BshNI	GGYRCC	1 cut(s)	886
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	420, 485
BslFI	GGGAC	4 cut(s)	26, 599, 721, 768
BslI	CCNNNNNNNGG	2 cut(s)	814, 920
BsmAI	GTCTC	2 cut(s)	410, 522
BsmFI	GGGAC	4 cut(s)	26, 599, 721, 768
BsnI	GGCC	2 cut(s)	62, 597
Bso31I	GGTCTC	2 cut(s)	410, 522
BsoBI	CYCGRG	1 cut(s)	672
Bsp120I	GGGCCC	1 cut(s)	595
Bsp1286I	GDGCHC	3 cut(s)	599, 679, 889
Bsp143I	GATC	2 cut(s)	30, 345
BspANI	GGCC	2 cut(s)	62, 597
BspCNI	CTCAG	5 cut(s)	223, 376, 463, 610, 745
BspLI	GGNNCC	4 cut(s)	330, 597, 709, 888
BspQI	GCTCTTC	2 cut(s)	96, 531
BspT107I	GGYRCC	1 cut(s)	886
BspTNI	GGTCTC	2 cut(s)	410, 522
BsrDI	GCAATG	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	157, 552
BssECI	CCNNGG	3 cut(s)	401, 420, 808
BssMI	GATC	2 cut(s)	30, 345
BssT1I	CCWWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	712
Bst6I	CTCTTC	4 cut(s)	96, 266, 531, 634
BstC8I	GCNNGC	2 cut(s)	108, 495
BstDEI	CTNAG	6 cut(s)	20, 231, 384, 450, 618, 732
BstDSI	CCRYGG	1 cut(s)	808
BstF5I	GGATG	4 cut(s)	55, 147, 252, 910
BstKTI	GATC	2 cut(s)	33, 348
BstMAI	GTCTC	2 cut(s)	410, 522
BstMBI	GATC	2 cut(s)	30, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	2 cut(s)	599, 889
BstV1I	GCAGC	1 cut(s)	728
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	62, 597
BtgI	CCRYGG	1 cut(s)	808
BtsCI	GGATG	4 cut(s)	55, 147, 252, 910
Cac8I	GCNNGC	2 cut(s)	108, 495
Cfr13I	GGNCC	4 cut(s)	61, 595, 596, 708
DdeI	CTNAG	6 cut(s)	20, 231, 384, 450, 618, 732
DpnI	GATC	2 cut(s)	32, 347
DpnII	GATC	2 cut(s)	30, 345
Eam1104I	CTCTTC	4 cut(s)	96, 266, 531, 634
EarI	CTCTTC	4 cut(s)	96, 266, 531, 634
Eco130I	CCWWGG	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	2 cut(s)	410, 522
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	708
Eco81I	CCTNAGG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	401
FaiI	YATR	7 cut(s)	140, 304, 359, 428, 438, 696, 939
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	4 cut(s)	26, 599, 721, 768
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	4 cut(s)	62, 134, 239, 897
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	4 cut(s)	312, 581, 758, 837
GluI	GCNGC	1 cut(s)	717
HaeIII	GGCC	2 cut(s)	62, 597
HapII	CCGG	2 cut(s)	420, 485
HinfI	GANTC	2 cut(s)	507, 934
HpaII	CCGG	2 cut(s)	420, 485
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	4 cut(s)	226, 325, 502, 817
Hpy188III	TCNNGA	2 cut(s)	589, 848
Hpy8I	GTNNAC	1 cut(s)	808
HpyAV	CCTTC	4 cut(s)	186, 266, 304, 491
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4V	TGCA	3 cut(s)	559, 654, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	6 cut(s)	20, 231, 384, 450, 618, 732
Kzo9I	GATC	2 cut(s)	30, 345
LguI	GCTCTTC	2 cut(s)	96, 531
LmnI	GCTCC	3 cut(s)	328, 402, 923
Lsp1109I	GCAGC	1 cut(s)	728
MaeI	CTAG	4 cut(s)	312, 581, 758, 837
MaeIII	GTNAC	2 cut(s)	487, 869
MalI	GATC	2 cut(s)	32, 347
MboI	GATC	2 cut(s)	30, 345
MboII	GAAGA	7 cut(s)	107, 113, 253, 548, 569, 621, 624
MfeI	CAATTG	2 cut(s)	830, 918
MhlI	GDGCHC	3 cut(s)	599, 679, 889
MluCI	AATT	5 cut(s)	83, 636, 830, 853, 918
MlyI	GAGTC	2 cut(s)	516, 928
MmeI	TCCRAC	1 cut(s)	795
MnlI	CCTC	8 cut(s)	103, 226, 250, 319, 508, 613, 637, 858
MseI	TTAA	4 cut(s)	288, 393, 464, 516
MslI	CAYNNNNRTG	1 cut(s)	609
MspI	CCGG	2 cut(s)	420, 485
MspR9I	CCNGG	1 cut(s)	421
MunI	CAATTG	2 cut(s)	830, 918
MwoI	GCNNNNNNNGC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	2 cut(s)	30, 345
NlaIV	GGNNCC	4 cut(s)	330, 597, 709, 888
NmuCI	GTSAC	2 cut(s)	487, 869
OliI	CACNNNNGTG	1 cut(s)	609
PciSI	GCTCTTC	2 cut(s)	96, 531
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	1 cut(s)	718
PleI	GAGTC	2 cut(s)	515, 928
PpsI	GAGTC	2 cut(s)	515, 928
PspN4I	GGNNCC	4 cut(s)	330, 597, 709, 888
PspOMI	GGGCCC	1 cut(s)	595
PspPI	GGNCC	4 cut(s)	61, 595, 596, 708
RseI	CAYNNNNRTG	1 cut(s)	609
SapI	GCTCTTC	2 cut(s)	96, 531
SaqAI	TTAA	4 cut(s)	288, 393, 464, 516
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	2 cut(s)	30, 345
Sau96I	GGNCC	4 cut(s)	61, 595, 596, 708
SchI	GAGTC	2 cut(s)	516, 928
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	3 cut(s)	599, 679, 889
SinI	GGWCC	1 cut(s)	708
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
Sse9I	AATT	5 cut(s)	83, 636, 830, 853, 918
SspMI	CTAG	4 cut(s)	312, 581, 758, 837
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	712
TaqI	TCGA	3 cut(s)	99, 793, 825
TasI	AATT	5 cut(s)	83, 636, 830, 853, 918
Tru1I	TTAA	4 cut(s)	288, 393, 464, 516
Tru9I	TTAA	4 cut(s)	288, 393, 464, 516
TseFI	GTSAC	2 cut(s)	487, 869
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	2 cut(s)	487, 869
Van91I	CCANNNNNTGG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	708
XapI	RAATTY	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	4 cut(s)	312, 581, 758, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.