Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

45086991 .. 45088656

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG317000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGCAAAGGAAGGGCCGGAGATTGATACTCTTCCCACTGCCCTTTCAAGGTCATATAAACCCCATGCTAGAGCTGGCCAATATTTTACACCTGAAAGGCTTCTCCATAACCATCATTCACACCAACTTCAACTCTCTCAACCCTTCAAGCCATCCACACTTCACCTTTCACTCAATTCCTGATGGCTTATCTGAAAGTGAGGCCTCCACAAAGGATATCATCTGCCTCGTTTCTGTTCTAAATGCTAAATGTGTCGAACCTTTCCGAGAATGCTTGGCTAGCTTGTTATCTGATGTTTCAGAGGAGCCTGTTGCTTGTTTGATATCAGACGCTATCTTTCACTTCGCTCAATCTGTTGCCGATAGCCTTAAGGTCCCGAGGGTTGTTTTAAGGACTGGGGGTGCTTCTTCATTTACTGTTTTTGCTGCATTTCCACTTCTGCGTGAAAAGGGCTACATCCCAATACAAGATTCTCGACTAGAAGAGCCAGTGGCAGAGTTCCCACCTCTCAAAGTCAAAGACCTTCCTGTGCTCAAAGGGTGTGACTCAGAGGAATATTATCAACTATTAGAGCCGGGGGCAGAGAGAGGTGACATCGAAAGAACGATTAGAAAACTAATGGTGGAGAAAGAAGGGGAAGAGATCAGAGCCAGAAGCTTAAAGCTAATGGAGAAGGCGAATCTCTGCTTCAAACAAGATGGCTCTTCATACCAATCCTTGGACGGCTTGGTTAAACATATTCTATCACTAGAATCATTTGTTTTTCGAACTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

259

Amino Acids

29.03

Weight (kDa)

5.93

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	721
AcoI	YGGCCR	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	50, 721
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	50, 133, 150, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	457, 489
AluBI	AGCT	4 cut(s)	76, 285, 660, 667
AluI	AGCT	4 cut(s)	76, 285, 660, 667
Alw21I	GWGCWC	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	3 cut(s)	16, 78, 204
ApeKI	GCWGC	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	16, 376
AsuC2I	CCSGG	1 cut(s)	579
AsuHPI	GGTGA	2 cut(s)	157, 605
AsuII	TTCGAA	1 cut(s)	769
AsuNHI	GCTAGC	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	4 cut(s)	122, 162, 179, 695
BceAI	ACGGC	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	579
BfaI	CTAG	4 cut(s)	71, 282, 482, 752
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	16, 376
BmiI	GGNNCC	2 cut(s)	309, 378
BmrFI	CCNGG	1 cut(s)	579
BmrI	ACTGGG	1 cut(s)	408
BmtI	GCTAGC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	769
BpuMI	CCSGG	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	380, 578, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 721
Bse1I	ACTGG	2 cut(s)	403, 491
BseDI	CCNNGG	3 cut(s)	380, 578, 720
BseGI	GGATG	2 cut(s)	154, 459
BseLI	CCNNNNNNNGG	2 cut(s)	50, 721
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	2 cut(s)	403, 491
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	18, 80, 206
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	2 cut(s)	19, 578
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	50, 721
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	18, 80, 206
BsoBI	CYCGRG	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	769
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	1 cut(s)	645
BspANI	GGCC	3 cut(s)	18, 80, 206
BspCNI	CTCAG	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	309, 378
BspOI	GCTAGC	1 cut(s)	285
BspQI	GCTCTTC	2 cut(s)	480, 712
BspT104I	TTCGAA	1 cut(s)	769
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	403, 491
BssECI	CCNNGG	3 cut(s)	380, 578, 720
BssMI	GATC	1 cut(s)	645
BssT1I	CCWWGG	1 cut(s)	720
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	4 cut(s)	38, 480, 636, 712
BstAFI	CTTAAG	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	769
BstC8I	GCNNGC	2 cut(s)	78, 283
BstDEI	CTNAG	2 cut(s)	550, 774
BstF5I	GGATG	2 cut(s)	154, 459
BstKTI	GATC	1 cut(s)	648
BstMBI	GATC	1 cut(s)	645
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	18, 80, 206
BtsCI	GGATG	2 cut(s)	154, 459
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	38, 498
Cac8I	GCNNGC	2 cut(s)	78, 283
Cfr13I	GGNCC	2 cut(s)	16, 376
CseI	GACGC	1 cut(s)	341
CviAII	CATG	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	550, 774
DpnI	GATC	1 cut(s)	647
DpnII	GATC	1 cut(s)	645
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	4 cut(s)	38, 480, 636, 712
EarI	CTCTTC	4 cut(s)	38, 480, 636, 712
Eco130I	CCWWGG	1 cut(s)	720
Eco147I	AGGCCT	1 cut(s)	206
Eco32I	GATATC	2 cut(s)	220, 327
Eco47I	GGWCC	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRV	GATATC	2 cut(s)	220, 327
EcoT14I	CCWWGG	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	1 cut(s)	70
FaiI	YATR	6 cut(s)	57, 59, 68, 110, 712, 741
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	141, 446
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	4 cut(s)	71, 282, 482, 752
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	18, 80, 206
HapII	CCGG	2 cut(s)	19, 578
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	4 cut(s)	473, 548, 682, 755
HpaII	CCGG	2 cut(s)	19, 578
HphI	GGTGA	2 cut(s)	157, 605
Hpy188I	TCNGA	7 cut(s)	196, 269, 295, 304, 331, 553, 650
Hpy188III	TCNNGA	3 cut(s)	182, 379, 477
HpyAV	CCTTC	5 cut(s)	7, 156, 536, 629, 670
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	2 cut(s)	550, 774
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	645
LguI	GCTCTTC	2 cut(s)	480, 712
LmnI	GCTCC	2 cut(s)	4, 307
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	4 cut(s)	71, 282, 482, 752
MaeIII	GTNAC	2 cut(s)	545, 593
MalI	GATC	1 cut(s)	647
MboI	GATC	1 cut(s)	645
MboII	GAAGA	5 cut(s)	25, 402, 497, 653, 699
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	542
MnlI	CCTC	8 cut(s)	196, 217, 239, 298, 375, 519, 547, 584
Mox20I	TGGCCA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	4 cut(s)	372, 392, 662, 735
Msp20I	TGGCCA	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	19, 578
MspR9I	CCNGG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	282
NciI	CCSGG	1 cut(s)	579
NdeII	GATC	1 cut(s)	645
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	309, 378
NmuCI	GTSAC	2 cut(s)	545, 593
NspV	TTCGAA	1 cut(s)	769
PceI	AGGCCT	1 cut(s)	206
PciSI	GCTCTTC	2 cut(s)	480, 712
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	3 cut(s)	473, 682, 755
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	309, 378
PspPI	GGNCC	2 cut(s)	16, 376
PspPPI	RGGWCCY	1 cut(s)	376
SapI	GCTCTTC	2 cut(s)	480, 712
SaqAI	TTAA	4 cut(s)	372, 392, 662, 735
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	1 cut(s)	645
Sau96I	GGNCC	2 cut(s)	16, 376
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	769
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	177
SseBI	AGGCCT	1 cut(s)	206
SspI	AATATT	2 cut(s)	85, 560
SspMI	CTAG	4 cut(s)	71, 282, 482, 752
StuI	AGGCCT	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	4 cut(s)	258, 478, 600, 769
TasI	AATT	1 cut(s)	177
TfiI	GAWTC	3 cut(s)	473, 682, 755
Tru1I	TTAA	4 cut(s)	372, 392, 662, 735
Tru9I	TTAA	4 cut(s)	372, 392, 662, 735
TscAI	CASTG	2 cut(s)	45, 498
TseFI	GTSAC	2 cut(s)	545, 593
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	2 cut(s)	545, 593
TspDTI	ATGAA	2 cut(s)	402, 699
TspRI	CASTG	2 cut(s)	45, 498
Van91I	CCANNNNNTGG	1 cut(s)	721
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	4 cut(s)	71, 282, 482, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.