Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

18422619 .. 18423436

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGCAAATTAGGAAAGGCAAGAGGTTGATACTCTTCCCATTACCCCTTCAAGGCCGTATAAACCCTATGCTTGAGCTAGCTAATGTTCTACACTTCAGAGGCTTCTCCATAACCATCCTCCACACCAACTTCAACTCTCTCAACCCTTCAAACCATCCTCACTTTACCTTCCACTCGATCCCTGATGGCCTATCCGAAACTGAGACCTCCACAAAAAGTCACATGCTCCTTGTTTCTTGTCTAAACGCAAACTGTCATGATCCTTTCCGAAACTGCCTAGCTAACTTGTTATCCGATGATGGTTCAGAGGAGCCTATTGCTTGCTTAATCACTGACCCTCTCTTTGACTTCACTCGATCTGTCGCTAAGAGCCTTAAGCTTCCAAGGATGCTGCTAAGAACAGGAAGTGCCACATCGACTACTGTTTTTGCCGCATTTCCACTTCTATGGGAAAAGGGTTACCTCCCCAAACAAGAATCTCAACTAGAAGAGCCAGTAGTAGAGTTGCCACCACTCAAAGTCAAGGACCTTCCAATGAATTCTGGTGACCCAAAGATATTTTATCAACTAGTAACTGAACTGGCAAATGAGGTCAAGACTTCAGATGGAGTTATTTTCAATACTTCTGAAGATCTTGAAGAACAAGAATCCGACAAGACTTTCCCATCCCAATTTTCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

229

Amino Acids

25.61

Weight (kDa)

5.36

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	2 cut(s)	175, 257
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	3 cut(s)	82, 588, 651
AfiI	CCNNNNNNNGG	1 cut(s)	53
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	5 cut(s)	53, 136, 153, 622, 641
AhlI	ACTAGT	1 cut(s)	571
AluBI	AGCT	4 cut(s)	79, 83, 284, 382
AluI	AGCT	4 cut(s)	79, 83, 284, 382
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	175, 257
AoxI	GGCC	2 cut(s)	55, 190
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	541
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspS9I	GGNCC	1 cut(s)	529
AsuHPI	GGTGA	1 cut(s)	560
AsuNHI	GCTAGC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	529
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	6 cut(s)	125, 165, 182, 296, 602, 676
BceAI	ACGGC	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	200
BcuI	ACTAGT	1 cut(s)	571
BfaI	CTAG	4 cut(s)	80, 281, 488, 572
BfrI	CTTAAG	1 cut(s)	377
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	2 cut(s)	395, 435
BlsI	GCNGC	2 cut(s)	396, 436
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	381
BmtI	GCTAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	497, 588
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	4 cut(s)	117, 157, 396, 668
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	497, 588
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	381
BshFI	GGCC	2 cut(s)	57, 192
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	57, 192
Bso31I	GGTCTC	1 cut(s)	200
Bsp143I	GATC	4 cut(s)	180, 262, 359, 634
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	2 cut(s)	57, 192
BspCNI	CTCAG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	315
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	175, 257
BspQI	GCTCTTC	1 cut(s)	486
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	497, 588
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	4 cut(s)	180, 262, 359, 634
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	257, 427
Bst6I	CTCTTC	2 cut(s)	41, 486
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	81, 325
BstDEI	CTNAG	3 cut(s)	204, 369, 398
BstEII	GGTNACC	2 cut(s)	461, 548
BstF5I	GGATG	4 cut(s)	117, 157, 396, 668
BstKTI	GATC	4 cut(s)	183, 265, 362, 637
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	180, 262, 359, 634
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	2 cut(s)	461, 548
BstV1I	GCAGC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	634
BsuRI	GGCC	2 cut(s)	57, 192
BtsCI	GGATG	4 cut(s)	117, 157, 396, 668
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	2 cut(s)	81, 325
CciI	TCATGA	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	529
CviAII	CATG	2 cut(s)	226, 260
DdeI	CTNAG	3 cut(s)	204, 369, 398
DpnI	GATC	4 cut(s)	182, 264, 361, 636
DpnII	GATC	4 cut(s)	180, 262, 359, 634
Eam1104I	CTCTTC	2 cut(s)	41, 486
EarI	CTCTTC	2 cut(s)	41, 486
Eco130I	CCWWGG	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	3 cut(s)	82, 588, 651
Eco91I	GGTNACC	2 cut(s)	461, 548
EcoO109I	RGGNCCY	1 cut(s)	529
EcoO65I	GGTNACC	2 cut(s)	461, 548
EcoRI	GAATTC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	2 cut(s)	229, 263
FaiI	YATR	6 cut(s)	62, 71, 113, 227, 261, 451
FatI	CATG	2 cut(s)	225, 259
Fnu4HI	GCNGC	2 cut(s)	395, 435
FokI	GGATG	4 cut(s)	104, 144, 403, 655
Fsp4HI	GCNGC	2 cut(s)	395, 435
FspBI	CTAG	4 cut(s)	80, 281, 488, 572
GluI	GCNGC	2 cut(s)	395, 435
HaeIII	GGCC	2 cut(s)	57, 192
Hin1II	CATG	2 cut(s)	229, 263
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	479, 650
HphI	GGTGA	1 cut(s)	560
Hpy188I	TCNGA	8 cut(s)	101, 199, 272, 298, 310, 607, 631, 655
Hpy188III	TCNNGA	3 cut(s)	260, 598, 638
HpyAV	CCTTC	4 cut(s)	59, 159, 181, 542
HpyCH4III	ACNGT	2 cut(s)	257, 427
HpyF3I	CTNAG	3 cut(s)	204, 369, 398
Hsp92II	CATG	2 cut(s)	229, 263
Kzo9I	GATC	4 cut(s)	180, 262, 359, 634
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	3 cut(s)	4, 234, 313
LpnPI	CCDG	5 cut(s)	198, 390, 510, 531, 569
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	4 cut(s)	80, 281, 488, 572
MaeIII	GTNAC	4 cut(s)	221, 461, 548, 574
MalI	GATC	4 cut(s)	182, 264, 361, 636
MboI	GATC	4 cut(s)	180, 262, 359, 634
MboII	GAAGA	4 cut(s)	28, 503, 644, 653
MflI	RGATCY	1 cut(s)	634
MluCI	AATT	3 cut(s)	9, 541, 674
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	9 cut(s)	18, 95, 131, 171, 220, 304, 351, 476, 586
MseI	TTAA	2 cut(s)	329, 378
MslI	CAYNNNNRTG	1 cut(s)	448
MspCI	CTTAAG	1 cut(s)	377
NdeII	GATC	4 cut(s)	180, 262, 359, 634
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	229, 263
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	221, 548
NspI	RCATGY	1 cut(s)	229
PagI	TCATGA	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	479, 650
PkrI	GCNGC	2 cut(s)	396, 436
PpuMI	RGGWCCY	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	529
PspEI	GGTNACC	2 cut(s)	461, 548
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	529
PspPPI	RGGWCCY	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	329, 378
SatI	GCNGC	2 cut(s)	395, 435
Sau3AI	GATC	4 cut(s)	180, 262, 359, 634
Sau96I	GGNCC	1 cut(s)	529
SfaNI	GCATC	1 cut(s)	381
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	448
SmlI	CTYRAG	2 cut(s)	74, 377
SmoI	CTYRAG	2 cut(s)	74, 377
SpeI	ACTAGT	1 cut(s)	571
Sse9I	AATT	3 cut(s)	9, 541, 674
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	4 cut(s)	80, 281, 488, 572
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	257, 427
TaqI	TCGA	3 cut(s)	179, 358, 419
TasI	AATT	3 cut(s)	9, 541, 674
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	2 cut(s)	479, 650
Tru1I	TTAA	2 cut(s)	329, 378
Tru9I	TTAA	2 cut(s)	329, 378
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	221, 548
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	2 cut(s)	221, 548
TspDTI	ATGAA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	4 cut(s)	80, 281, 488, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.