Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

11088609 .. 11089001

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG149400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGCAAAGCAAGGGCAGGAGATTGATACTCTTCCCAGTACCTCTTCAAGGCCATATAATCCCAATGCTGGAGCTGGCCAACCTTCTACACTTCAAAGGCTTCTCCATAACCATGGTCCACACCCACTTCAACAAACTCAACCCTTCAAGCTATCCGCACTTAACCTTTCAGTTGATTGATGAAGGCTTGTCGGAGAGTGAGGTCTCCACAAAGGACATTGCCCATCTTATGTCTCTTCTAGAGCAGAAATGTGCTGAACCATTCAAGGAATGCTTGATTAGCTTGCTATCTGATGTTTCAAAAGAGCCCGTTGCTTGTTTGATCACCGAATTTCGCTTTACTTCACTCAATCTCTTGCTGAGAGTTTCAAGCTACCAAGGCTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

130

Amino Acids

14.75

Weight (kDa)

6.28

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	50, 70
AgsI	TTSAA	7 cut(s)	50, 97, 133, 150, 268, 303, 372
AluBI	AGCT	4 cut(s)	76, 153, 285, 375
AluI	AGCT	4 cut(s)	76, 153, 285, 375
Alw26I	GTCTC	2 cut(s)	211, 240
AoxI	GGCC	2 cut(s)	52, 78
ApoI	RAATTY	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	312
BccI	CCATC	1 cut(s)	234
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	211, 240
BfaI	CTAG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	114, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 70
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	114, 379
BseLI	CCNNNNNNNGG	2 cut(s)	50, 70
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	54, 80
BslI	CCNNNNNNNGG	2 cut(s)	50, 70
BsmAI	GTCTC	2 cut(s)	211, 240
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	54, 80
Bso31I	GGTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	2 cut(s)	54, 80
BspCNI	CTCAG	1 cut(s)	354
BspTNI	GGTCTC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	114, 379
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	114, 379
Bst6I	CTCTTC	3 cut(s)	38, 51, 243
BstC8I	GCNNGC	2 cut(s)	78, 287
BstDEI	CTNAG	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	2 cut(s)	211, 240
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 381
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	54, 80
BtgI	CCRYGG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	78, 287
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	1 cut(s)	115
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	38, 51, 243
EarI	CTCTTC	3 cut(s)	38, 51, 243
Eco130I	CCWWGG	2 cut(s)	114, 379
Eco24I	GRGCYC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	114, 379
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	2 cut(s)	114, 379
FaeI	CATG	1 cut(s)	118
FaiI	YATR	5 cut(s)	57, 59, 110, 116, 233
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	1 cut(s)	114
FbaI	TGATCA	1 cut(s)	324
FriOI	GRGCYC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	54, 80
Hin1II	CATG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	196, 295
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	95, 156, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 381
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	2 cut(s)	4, 73
LpnPI	CCDG	4 cut(s)	4, 51, 56, 62
MaeI	CTAG	1 cut(s)	242
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	3 cut(s)	25, 38, 230
MhlI	GDGCHC	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	332
MluNI	TGGCCA	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	2 cut(s)	54, 196
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	282, 381
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	118
PctI	GAATGC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	8 cut(s)	46, 78, 87, 155, 170, 207, 287, 377
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	242
StyI	CCWWGG	2 cut(s)	114, 379
TasI	AATT	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	332
XbaI	TCTAGA	1 cut(s)	241
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.