Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Reverse (-)

9054893 .. 9056851

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGCAGAGGAAAGGCCGGAGATTGGTACTCTTCCCACTGCCCTTGCAAGGCCATATGAACCCCATGCTTGAGCTGGCCAACATTCTATACTTCAAAGGCTTCTCCATAACCATCATTCACACCAACTTCAACCCTCTAAACCCTTCAACCCATCCTCACTTTACCTACCACTTGATCTCAGATAACTTATCTGAGAGCGAGGCTGCTGAAAAGGATCTCCTCCTCCTCCTTTCTCATCTCAACACAAAGTGTTTTGAACCTTTCAGGGAATGCCTGGCTACCTTGGTATCTGATCTCTCAAAAGAGCCTGTTGCTTGCTTGATCTTTGACCCTGTCTTTGATTTCACTCAATCTGTAGCAGAGACCCTCAAGATCCCAAGGATTCTGTTAAGGACTGGTAGTGCCTCTTTCACTGCTGTTATATCTGCATTTCCACTTTTGGAGAAAAAAGGTTACATTCCAAAACAAGCTGTACCATTACAAGTTAGCTTTACTTGCAGCTTGAGCTATTTACAATGTGTCAGCACATTTGACAGCACTTTTCGCAAGGAATTTCACATTCCAATTTTCCCAATAGGTCCATTTCATAAGTGTGTCCCAGCAACCACTTCTACAAGTAGCTTATTATCACAAGACCGGAGCTGCATTTCATGGCTAAACACTGAAGCACCAAAATCGGTTATCTATGTTAGTTTTGGGAGCATCGCCACAATAAACAAAGCTCAGTTTTTGGAGATAGCCTTGGGACTAGCGAACAGCAAGCAGCCCTTCTTGTGGGTTGTTCGACCCAGATTAGTCCATGGATCAGATTGGCTTGAACCGTTACCTGGTGGGTTTCTTGAGACCTTGAATGGTAGGGGACACATTGTTAAATGGGCACCTCAAAAAGAAGTGCTTGCCCATCAAGCAGTTGGTGTGTTTTGGACTCACAATGGCTGGAATTCTACATTGGAGAGTATATGCGAGGGGAAAACTAATGGTGGAGACGAAGCGGAACGGATGAGAGATAGGTTGTCAAAGCTAAAGGATGAGGCAAATCTTTGCCCGGGACAAGGCGGCTCTTCATACCAATCTTTGAATGACTTGGTTAATCACATTTTATCATTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

371

Amino Acids

41.38

Weight (kDa)

6.89

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	219 - 324	6.2e-14	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	880
AciI	CCGC	2 cut(s)	995, 1059
AclWI	GGATC	3 cut(s)	225, 370, 814
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	554, 943
AcuI	CTGAAG	1 cut(s)	687
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	30, 477
AfiI	CCNNNNNNNGG	5 cut(s)	25, 50, 777, 830, 1055
AgsI	TTSAA	7 cut(s)	97, 133, 150, 260, 821, 853, 1081
AjnI	CCWGG	2 cut(s)	276, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	935, 967
AluBI	AGCT	9 cut(s)	76, 473, 492, 504, 510, 624, 645, 725, 1024
AluI	AGCT	9 cut(s)	76, 473, 492, 504, 510, 624, 645, 725, 1024
Alw26I	GTCTC	3 cut(s)	359, 839, 981
AlwI	GGATC	3 cut(s)	225, 370, 814
Ama87I	CYCGRG	1 cut(s)	1048
AoxI	GGCC	3 cut(s)	16, 52, 78
ApeKI	GCWGC	4 cut(s)	206, 501, 645, 766
ApoI	RAATTY	2 cut(s)	554, 943
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspS9I	GGNCC	1 cut(s)	581
AsuC2I	CCSGG	2 cut(s)	1049, 1050
AvaI	CYCGRG	1 cut(s)	1048
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	883
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	880
BbvI	GCAGC	4 cut(s)	193, 513, 632, 778
BccI	CCATC	3 cut(s)	122, 162, 912
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BciT130I	CCWGG	2 cut(s)	278, 831
BcnI	CCSGG	2 cut(s)	1049, 1050
BcoDI	GTCTC	3 cut(s)	359, 839, 981
BfaI	CTAG	1 cut(s)	752
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	5 cut(s)	207, 502, 646, 767, 1060
BlsI	GCNGC	5 cut(s)	208, 503, 647, 768, 1061
Bme1390I	CCNGG	4 cut(s)	278, 831, 1049, 1050
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	1048
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	4 cut(s)	278, 831, 1049, 1050
BmsI	GCATC	1 cut(s)	714
BpuEI	CTTGAG	4 cut(s)	92, 356, 526, 863
BpuMI	CCSGG	2 cut(s)	1049, 1050
BsaI	GGTCTC	2 cut(s)	359, 839
BsaJI	CCNNGG	5 cut(s)	285, 380, 744, 802, 1048
BsaWI	WCCGGW	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 50, 777, 830, 1055
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	278, 831
BseDI	CCNNGG	5 cut(s)	285, 380, 744, 802, 1048
BseGI	GGATG	3 cut(s)	154, 1008, 1036
BseLI	CCNNNNNNNGG	5 cut(s)	25, 50, 777, 830, 1055
BseMII	CTCAG	3 cut(s)	186, 195, 740
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	3 cut(s)	212, 215, 218
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	4 cut(s)	193, 513, 632, 778
BseYI	CCCAGC	1 cut(s)	601
BshFI	GGCC	3 cut(s)	18, 54, 80
BshNI	GGYRCC	1 cut(s)	880
BsiHKCI	CYCGRG	1 cut(s)	1048
BsiSI	CCGG	3 cut(s)	19, 640, 1049
BslFI	GGGAC	4 cut(s)	584, 762, 876, 1065
BslI	CCNNNNNNNGG	5 cut(s)	25, 50, 777, 830, 1055
BsmAI	GTCTC	3 cut(s)	359, 839, 981
BsmBI	CGTCTC	1 cut(s)	981
BsmFI	GGGAC	4 cut(s)	584, 762, 876, 1065
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	18, 54, 80
Bso31I	GGTCTC	2 cut(s)	359, 839
BsoBI	CYCGRG	1 cut(s)	1048
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	6 cut(s)	177, 217, 295, 324, 375, 806
Bsp19I	CCATGG	1 cut(s)	802
BspACI	CCGC	2 cut(s)	995, 1059
BspANI	GGCC	3 cut(s)	18, 54, 80
BspCNI	CTCAG	3 cut(s)	187, 194, 739
BspLI	GGNNCC	1 cut(s)	882
BspPI	GGATC	3 cut(s)	225, 370, 814
BspQI	GCTCTTC	1 cut(s)	1069
BspT107I	GGYRCC	1 cut(s)	880
BspTNI	GGTCTC	2 cut(s)	359, 839
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	5 cut(s)	285, 380, 744, 802, 1048
BssMI	GATC	6 cut(s)	177, 217, 295, 324, 375, 806
BssT1I	CCWWGG	4 cut(s)	285, 380, 744, 802
Bst2UI	CCWGG	2 cut(s)	278, 831
Bst4CI	ACNGT	1 cut(s)	825
Bst6I	CTCTTC	2 cut(s)	38, 1069
BstC8I	GCNNGC	4 cut(s)	78, 319, 764, 900
BstDEI	CTNAG	3 cut(s)	181, 195, 726
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	3 cut(s)	154, 1008, 1036
BstKTI	GATC	6 cut(s)	180, 220, 298, 327, 378, 809
BstMAI	GTCTC	3 cut(s)	359, 839, 981
BstMBI	GATC	6 cut(s)	177, 217, 295, 324, 375, 806
BstMWI	GCNNNNNNNGC	4 cut(s)	498, 507, 546, 908
BstNI	CCWGG	2 cut(s)	278, 831
BstSCI	CCNGG	4 cut(s)	276, 829, 1047, 1048
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	4 cut(s)	193, 513, 632, 778
BstX2I	RGATCY	2 cut(s)	217, 375
BstYI	RGATCY	2 cut(s)	217, 375
BsuRI	GGCC	3 cut(s)	18, 54, 80
BtgI	CCRYGG	1 cut(s)	802
BtgZI	GCGATG	1 cut(s)	691
BtsCI	GGATG	3 cut(s)	154, 1008, 1036
BtsI	GCAGTG	2 cut(s)	38, 414
BtsIMutI	CAGTG	3 cut(s)	38, 414, 663
Cac8I	GCNNGC	4 cut(s)	78, 319, 764, 900
Cfr13I	GGNCC	1 cut(s)	581
Cfr9I	CCCGGG	1 cut(s)	1048
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	2 cut(s)	29, 476
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	3 cut(s)	67, 654, 803
CviQI	GTAC	2 cut(s)	29, 476
DdeI	CTNAG	3 cut(s)	181, 195, 726
DpnI	GATC	6 cut(s)	179, 219, 297, 326, 377, 808
DpnII	GATC	6 cut(s)	177, 217, 295, 324, 375, 806
DraIII	CACNNNGTG	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	38, 1069
EarI	CTCTTC	2 cut(s)	38, 1069
Eco130I	CCWWGG	4 cut(s)	285, 380, 744, 802
Eco31I	GGTCTC	2 cut(s)	359, 839
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	1048
EcoRI	GAATTC	1 cut(s)	943
EcoRII	CCWGG	2 cut(s)	276, 829
EcoT14I	CCWWGG	4 cut(s)	285, 380, 744, 802
ErhI	CCWWGG	4 cut(s)	285, 380, 744, 802
Esp3I	CGTCTC	1 cut(s)	981
FaeI	CATG	3 cut(s)	70, 657, 806
FalI	AAGNNNNNCTT	4 cut(s)	755, 787, 882, 914
FaqI	GGGAC	4 cut(s)	584, 762, 876, 1065
FatI	CATG	3 cut(s)	66, 653, 802
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	207, 502, 646, 767, 1060
FokI	GGATG	3 cut(s)	141, 1015, 1043
Fsp4HI	GCNGC	5 cut(s)	207, 502, 646, 767, 1060
FspBI	CTAG	1 cut(s)	752
GluI	GCNGC	5 cut(s)	207, 502, 646, 767, 1060
GsaI	CCCAGC	1 cut(s)	605
HaeIII	GGCC	3 cut(s)	18, 54, 80
HapII	CCGG	3 cut(s)	19, 640, 1049
Hin1II	CATG	3 cut(s)	70, 657, 806
HinfI	GANTC	2 cut(s)	385, 928
HpaII	CCGG	3 cut(s)	19, 640, 1049
Hpy188I	TCNGA	4 cut(s)	184, 196, 295, 811
Hpy188III	TCNNGA	2 cut(s)	373, 842
HpyAV	CCTTC	2 cut(s)	156, 781
HpyCH4III	ACNGT	1 cut(s)	825
HpyCH4V	TGCA	4 cut(s)	49, 431, 501, 648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	498, 507, 546, 908
HpyF3I	CTNAG	3 cut(s)	181, 195, 726
Hsp92II	CATG	3 cut(s)	70, 657, 806
Kzo9I	GATC	6 cut(s)	177, 217, 295, 324, 375, 806
LguI	GCTCTTC	1 cut(s)	1069
LmnI	GCTCC	3 cut(s)	4, 642, 702
Lsp1109I	GCAGC	4 cut(s)	193, 513, 632, 778
LweI	GCATC	1 cut(s)	714
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	1 cut(s)	752
MaeIII	GTNAC	2 cut(s)	455, 825
MalI	GATC	6 cut(s)	179, 219, 297, 326, 377, 808
MboI	GATC	6 cut(s)	177, 217, 295, 324, 375, 806
MboII	GAAGA	2 cut(s)	25, 1056
MflI	RGATCY	2 cut(s)	217, 375
MhlI	GDGCHC	1 cut(s)	883
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	3 cut(s)	554, 567, 943
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	922
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	3 cut(s)	392, 873, 1092
MslI	CAYNNNNRTG	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	3 cut(s)	19, 640, 1049
MspR9I	CCNGG	4 cut(s)	278, 831, 1049, 1050
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	2 cut(s)	278, 831
MwoI	GCNNNNNNNGC	4 cut(s)	498, 507, 546, 908
NciI	CCSGG	2 cut(s)	1049, 1050
NcoI	CCATGG	1 cut(s)	802
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	6 cut(s)	177, 217, 295, 324, 375, 806
NlaIII	CATG	3 cut(s)	70, 657, 806
NlaIV	GGNNCC	1 cut(s)	882
PciSI	GCTCTTC	1 cut(s)	1069
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	208, 503, 647, 768, 1061
PleI	GAGTC	1 cut(s)	922
PpsI	GAGTC	1 cut(s)	922
Psp6I	CCWGG	2 cut(s)	276, 829
PspFI	CCCAGC	1 cut(s)	601
PspGI	CCWGG	2 cut(s)	276, 829
PspN4I	GGNNCC	1 cut(s)	882
PspPI	GGNCC	1 cut(s)	581
PsuI	RGATCY	2 cut(s)	217, 375
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	2 cut(s)	30, 477
RsaNI	GTAC	2 cut(s)	29, 476
RseI	CAYNNNNRTG	1 cut(s)	594
SapI	GCTCTTC	1 cut(s)	1069
SaqAI	TTAA	3 cut(s)	392, 873, 1092
SatI	GCNGC	5 cut(s)	207, 502, 646, 767, 1060
Sau3AI	GATC	6 cut(s)	177, 217, 295, 324, 375, 806
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	922
ScrFI	CCNGG	4 cut(s)	278, 831, 1049, 1050
SduI	GDGCHC	1 cut(s)	883
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	1 cut(s)	714
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	581
SmaI	CCCGGG	1 cut(s)	1050
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	4 cut(s)	71, 371, 505, 842
SmoI	CTYRAG	4 cut(s)	71, 371, 505, 842
Sse9I	AATT	3 cut(s)	554, 567, 943
SsiI	CCGC	2 cut(s)	995, 1059
SspMI	CTAG	1 cut(s)	752
StyD4I	CCNGG	4 cut(s)	276, 829, 1047, 1048
StyI	CCWWGG	4 cut(s)	285, 380, 744, 802
TaaI	ACNGT	1 cut(s)	825
TaqI	TCGA	1 cut(s)	787
TasI	AATT	3 cut(s)	554, 567, 943
TauI	GCSGC	1 cut(s)	1062
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	3 cut(s)	392, 873, 1092
Tru9I	TTAA	3 cut(s)	392, 873, 1092
TscAI	CASTG	3 cut(s)	45, 421, 670
TseI	GCWGC	4 cut(s)	206, 501, 645, 766
TspDTI	ATGAA	4 cut(s)	74, 578, 642, 1056
TspGWI	ACGGA	1 cut(s)	1015
TspMI	CCCGGG	1 cut(s)	1048
TspRI	CASTG	3 cut(s)	45, 421, 670
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	2 cut(s)	554, 943
XcmI	CCANNNNNNNNNTGG	2 cut(s)	73, 911
XmaI	CCCGGG	1 cut(s)	1048
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.