Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000232

Physical Location & Seq

Genomic Coordinates Forward (+)

45016570 .. 45032039

Gene Structure 15470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGTCCTTGTAAACTTCGAATGGAGCAGAGGAAAGGCCGGAGGTTGATACTCTTCCCATTTCCCTTGCAAGGCCATATAAACCCTATGCTTGAGCTGGCCAACATTCTACACTTCAAAGGCTTCTCCATAACAATCATCCATACAAACTTCAACTCTCTCAACCCTTCAACCCATCCACAGTTCACCTTCCACTCAATCTCAGATGACTTATCTGAAAGCGAGGCTGCTGAAGAGGATCTTCTCCTTCTTCTTTCTCATCTCAACGCAAAGTGCAGTGAACCTTTCCGGGAATGCTTGGCCACCTTGTTGTCTAGTGTAACAGAGGAGCCTGTTGCTTGCTTGATCTGTGACCCACTCTTTGACTTCACTCAGTCTGTTGCTGAGAGCCTTAAGCTCCCATGGATTCTGCTAAGGACCAGTGGTGCTTCTTCCACTGCTGTCTATTCTGCATTTCCACTCCTGCGGGAAAAGGGTTACATTCCAAAGCAAGGTACAGGTGAAAGACTGAAAGTCACGGACAATCAAGGTTCGTGTCTAGAAAGGAATCGTTTATATGACAAAAAAGATGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

192

Amino Acids

21.58

Weight (kDa)

6.3

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55700 AT3G55710
fragaria_vesca	FvH4_3g11390 FvH4_3g11390 FvH4_5g04400 FvH4_7g23660 FvH4_7g23661 FvH4_7g23670 FvH4_7g23671 FvH4_7g23680 FvH4_7g23690 FvH4_7g23700
malus_domestica	MD01G1142600.v1.1 MD01G1142700.v1.1 MD01G1142800.v1.1 MD01G1143000.v1.1 MD01G1143100.v1.1 MD01G1143200.v1.1 MD01G1143400.v1.1 MD01G1143500.v1.1 MD01G1143600.v1.1 MD01G1144000.v1.1 MD01G1144100.v1.1 MD01G1148700.v1.1 MD03G1245400.v1.1 MD03G1245800.v1.1 MD07G1208300.v1.1 MD07G1208400.v1.1 MD07G1208800.v1.1 MD07G1208900.v1.1 MD07G1209000.v1.1 MD07G1209100.v1.1 MD07G1209300.v1.1 MD07G1209400.v1.1 MD07G1210300.v1.1
prunus_persica	Prupe.2G243500_v2.0.a1 Prupe.2G243600_v2.0.a1 Prupe.4G159100_v2.0.a1 Prupe.4G159400_v2.0.a1
pyrus_communis	pycom01g16270 pycom01g16280 pycom01g16290 pycom01g16300 pycom01g16310 pycom01g16330 pycom01g16340 pycom01g16350 pycom01g16360 pycom01g16370 pycom07g19390 pycom07g19400 pycom07g19410
rosa_chinensis	RchiOBHm_Chr1g0344701 RchiOBHm_Chr1g0368931 RchiOBHm_Chr1g0368951 RchiOBHm_Chr1g0368971 RchiOBHm_Chr1g0368981 RchiOBHm_Chr5g0008431 RchiOBHm_Chr5g0008941
rosa_laevigata	RLG00000004142 RLG00000027167 RLG00000027168 RLG00000027169 RLG00000027170 RLG00000027172 RLG00000027173 RLG00000027175 RLG00000031348 RLG00000031349 RLG00000031353 RLG00000031354 RLG00000031388 RLG00000031571
rosa_multiflora	Rmu_co8456137.1_g000001 Rmu_sc0004250.1_g000034 Rmu_sc0004250.1_g000035 Rmu_sc0004250.1_g000040 Rmu_sc0004250.1_g000042 Rmu_sc0004988.1_g000012 Rmu_sc0004988.1_g000016 Rmu_ssc0000167.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068060 Rroxscaffold_1G00068070 Rroxscaffold_3G00260740 Rroxscaffold_4G00288110 Rroxscaffold_4G00288120 Rroxscaffold_4G00288130 Rroxscaffold_4G00288150 Rroxscaffold_4G00288170 Rroxscaffold_4G00288190
rosa_rugosa	Rorug01G0346000 Rorug01G0346100 Rorug01G0346100 Rorug01G0346300 Rorug01G0346400 Rorug01G0346500 Rorug01G0346600 Rorug01G0346700 Rorug04G0435700 Rorug04G0435800 Rorug07G0021000 Rorug07G0021100 Rorug07G0021400 Rorug07G0021400
rosa_samantha	Rh1AG192100 Rh1AG352900 Rh1AG353000 Rh1AG353100 Rh1AG353200 Rh1AG353300 Rh1AG353400 Rh1AG353600 Rh1BG316400 Rh1BG316500 Rh1BG316600 Rh1BG316800 Rh1BG316900 Rh1BG317000 Rh1CG177300 Rh1CG331100 Rh1CG331300 Rh1CG331500 Rh1CG331600 Rh5AG410000 Rh5BG061600 Rh5BG423900 Rh5DG438400 Rh7AG148500 Rh7BG149400 Rh7BG149600 Rh7CG153000
rosa_wichuraiana	Rw1G015780 Rw1G031160 Rw1G031180 Rw1G031190 Rw1G031200 Rw1G031210 Rw1G031220 Rw1G031240 Rw5G005640 Rw5G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	466
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	2 cut(s)	99, 300
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	2 cut(s)	71, 491
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	3 cut(s)	118, 154, 171
AhdI	GACNNNNNGTC	1 cut(s)	512
AluBI	AGCT	2 cut(s)	97, 397
AluI	AGCT	2 cut(s)	97, 397
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	4 cut(s)	37, 73, 99, 300
ApeKI	GCWGC	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	178, 512
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	417
BalI	TGGCCA	2 cut(s)	101, 302
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	183, 563
BcnI	CCSGG	1 cut(s)	290
BfaI	CTAG	2 cut(s)	315, 539
BfrI	CTTAAG	1 cut(s)	392
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	417
BmeRI	GACNNNNNGTC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	413
Bpu14I	TTCGAA	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 491
Bse1I	ACTGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	138, 175
BseLI	CCNNNNNNNGG	2 cut(s)	71, 491
BseMII	CTCAG	3 cut(s)	216, 375, 386
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	4 cut(s)	39, 75, 101, 302
BsiSI	CCGG	2 cut(s)	40, 289
BslI	CCNNNNNNNGG	2 cut(s)	71, 491
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	4 cut(s)	39, 75, 101, 302
Bsp119I	TTCGAA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	238, 345
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	4 cut(s)	39, 75, 101, 302
BspCNI	CTCAG	3 cut(s)	215, 376, 385
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	238, 345
BssT1I	CCWWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	2 cut(s)	59, 228
BstAFI	CTTAAG	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	99, 340
BstDEI	CTNAG	4 cut(s)	202, 372, 384, 413
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	138, 175
BstKTI	GATC	2 cut(s)	241, 348
BstMBI	GATC	2 cut(s)	238, 345
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	39, 75, 101, 302
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	138, 175
BtsI	GCAGTG	2 cut(s)	283, 435
BtsIMutI	CAGTG	3 cut(s)	283, 427, 435
Cac8I	GCNNGC	2 cut(s)	99, 340
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	1 cut(s)	402
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	4 cut(s)	202, 372, 384, 413
DpnI	GATC	2 cut(s)	240, 347
DpnII	GATC	2 cut(s)	238, 345
DriI	GACNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	2 cut(s)	99, 300
Eam1104I	CTCTTC	2 cut(s)	59, 228
Eam1105I	GACNNNNNGTC	1 cut(s)	512
EarI	CTCTTC	2 cut(s)	59, 228
Eco130I	CCWWGG	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	1 cut(s)	405
FaiI	YATR	8 cut(s)	78, 80, 89, 131, 144, 403, 556, 558
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	1 cut(s)	401
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	125, 162
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	315, 539
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	4 cut(s)	39, 75, 101, 302
HapII	CCGG	2 cut(s)	40, 289
Hin1II	CATG	1 cut(s)	405
HinfI	GANTC	3 cut(s)	4, 406, 547
HpaII	CCGG	2 cut(s)	40, 289
HphI	GGTGA	2 cut(s)	178, 512
Hpy166II	GTNNAC	3 cut(s)	14, 186, 281
Hpy188I	TCNGA	2 cut(s)	205, 217
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	3 cut(s)	14, 186, 281
HpyAV	CCTTC	3 cut(s)	177, 199, 257
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	70, 276, 452
HpyF3I	CTNAG	4 cut(s)	202, 372, 384, 413
Hsp92II	CATG	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	238, 345
LmnI	GCTCC	3 cut(s)	25, 328, 402
LpnPI	CCDG	7 cut(s)	53, 83, 302, 345, 433, 476, 483
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	315, 539
MaeIII	GTNAC	4 cut(s)	319, 350, 476, 514
MalI	GATC	2 cut(s)	240, 347
MboI	GATC	2 cut(s)	238, 345
MboII	GAAGA	5 cut(s)	46, 233, 242, 245, 423
MflI	RGATCY	1 cut(s)	238
MlsI	TGGCCA	2 cut(s)	101, 302
MluCI	AATT	1 cut(s)	574
MluNI	TGGCCA	2 cut(s)	101, 302
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	24, 36, 217, 229, 319
Mox20I	TGGCCA	2 cut(s)	101, 302
MscI	TGGCCA	2 cut(s)	101, 302
MseI	TTAA	2 cut(s)	393, 577
Msp20I	TGGCCA	2 cut(s)	101, 302
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	2 cut(s)	40, 289
MspR9I	CCNGG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	238, 345
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	350, 514
NspV	TTCGAA	1 cut(s)	19
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	406, 547
PfoI	TCCNGGA	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	393, 577
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	238, 345
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	9 cut(s)	47, 99, 191, 286, 308, 399, 496, 502, 532
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	92, 392
SmoI	CTYRAG	2 cut(s)	92, 392
Sse9I	AATT	1 cut(s)	574
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	2 cut(s)	315, 539
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	19
TasI	AATT	1 cut(s)	574
TfiI	GAWTC	2 cut(s)	406, 547
Tru1I	TTAA	2 cut(s)	393, 577
Tru9I	TTAA	2 cut(s)	393, 577
TscAI	CASTG	3 cut(s)	283, 427, 442
TseFI	GTSAC	2 cut(s)	350, 514
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	350, 514
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	3 cut(s)	283, 427, 442
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	417
XbaI	TCTAGA	1 cut(s)	538
XspI	CTAG	2 cut(s)	315, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.